Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_009816.1 Length=70579 Score E Sequences producing significant alignments: (Bits) Value seq2949 251 3e-62 seq34909 183 1e-41 seq51529 140 1e-28 seq29968 122 4e-23 >seq2949 Length=5906 Score = 251 bits (278), Expect = 3e-62 Identities = 443/635 (70%), Gaps = 13/635 (2%) Strand=Plus/Plus Query 60116 CTTGGCAAGGCGGAACGTGACATCAGGAACGATAACTCCTAGGGAGAGAGTCTTAATACG 60175 |||||| || ||| |||| || || | || || || ||||| || ||||| || || Sbjct 1333 CTTGGCCAGCTCGAAGGTGATGTCCGGGATGACCACGCCGAGGGACAGGGTCTTGATGCG 1392 Query 60176 GATCTTCTCGTCGGCGTTTTCACGCTTGGTATCCAGGAACGCAAGGATGTCGGGGTGGTG 60235 |||||||||||||||||| || ||||||||||| ||||| |||||||| |||||||| Sbjct 1393 GATCTTCTCGTCGGCGTTCTCGCGCTTGGTATCGAGGAATCTCAGGATGTCCGGGTGGTG 1452 Query 60236 TGCGTTCAAATATACCGCCCCTGCGCCCTGCCTTGCACCCAGTTGGTTAGAGTAGGAGAA 60295 || || | ||| || ||||| |||||||| | | |||||| ||||| | ||||||||| Sbjct 1453 GGCATTGAGATAGACGGCCCCGGCGCCCTGGCGCGAACCCAGCTGGTTGGCGTAGGAGAA 1512 Query 60296 GCTATCTTCTAGAATCTTCATCACAGGGATGACTCCAGAGGCCTGACCTTCTCGA--CCC 60353 | ||||| || | |||||| | ||||||| || |||| ||| ||||||| | | Sbjct 1513 GGCGTCTTCCAGCAGCTTCATGATCGGGATGATGCCGGAGGACTG--GTTCTCGATGCGC 1570 Query 60354 TTAATCGGAGCTCCTGCCTCGCGGAGGTTG--GAGAATCCAATGCCGACTCCGCCACCAC 60411 || ||||| || || ||||||| | |||| || | || ||| || ||||| |||| Sbjct 1571 TTGATCGGCGCCCCGACCTCGCGCACGTTGCTCAGCA-GGAAGGCC-ACGCCGCCGCCAC 1628 Query 60412 GCTTAGACAGCTGGAGAGAGTCCTGAACGATTCGACCGATGGACCCCATGGTGTCCTGAA 60471 |||| |||||||| || | | || || ||||||||| ||||| |||| | | Sbjct 1629 GCTTGGACAGCTGCAGCGCCGAATTCACCGCGCGGCCGATGGACTCCATGTTGTCTTCGA 1688 Query 60472 CATCGAGGATGAAGCATGATACTGGCTTGCCTGCG-TCGAGAAGCCCCGCGTTGAGGAAG 60530 ||| | |||||| || || || ||| ||| | | | || |||||||| ||| Sbjct 1689 TGCGGAGCAGGAAGCAGGACACCAACTCGCC-GCGCTGGCGCTTGCCGGCGTTGAGAAAG 1747 Query 60531 GTCGGAGTTGCAGGCTGGAAGATTCCCTTGATAATGAGATCCACAAGGGACTCAGCGTGC 60590 ||||| || || ||||||||| || |||| || ||||| | |||||| || | Sbjct 1748 GTCGGCGTGGCCGGCTGGAAGCGCCCGCTGATCATCTCGTCCACCAAGGACTCGGCCAGG 1807 Query 60591 TCGAAGTCTTCGCTG--TAGTGGATGGCCGTGAGTAC-CACTCGATCTTCGTAGCGCTCG 60647 | ||| | | | || || || | | ||| ||||| ||||||||||| Sbjct 1808 CCCTCGTCACCACGGGCCAGACTCAGGGCGACCATGCACACCCGATCCTCGTAGCGCTCC 1867 Query 60648 TAATAGCGCTTGCCATCGTTAGTCTTCAAGGCGTAGGAGTTATAGAACTTCAGCGCTCCC 60707 ||||||| ||||||| ||||| | || ||| | | ||| |||| | || ||| Sbjct 1868 AGGTAGCGCTGGCCATCGAAGGTCTTGAGGGTATAGCTGGTGTAGTACTTGAAGGCGCCC 1927 Query 60708 ATGTAGGTCTTGAAGCGGAACTTGTGTCCGTAGGC 60742 | | || ||| ||||||||| |||| ||||||| Sbjct 1928 AGGAAGCTCTGGAAGCGGAATTTGTAGGCGTAGGC 1962 Score = 127 bits (140), Expect = 9e-25 Identities = 270/398 (68%), Gaps = 14/398 (4%) Strand=Plus/Plus Query 58409 GCAACCTTCCACTTCCGTGCCTTCTAC--CGACTTAGCAGAGGTTCGGATGTAGTACAGA 58466 ||| || | ||| || |||||||| | || | | || ||| |||||||| || || Sbjct 109 GCAGCCCTGCACCTCGGTGCCTTCCAGGGCGGCCTGGCGCAGG--CGGATGTAATAGAGC 166 Query 58467 GACTTCAGGCCCTTCTTGTGAGCGTAGATCTGCGCTCGGTTAATGTCTCGCGTTGTCGCT 58526 | ||| | ||||||||| |||||||||||||| ||||| ||||| || || || || Sbjct 167 GTCTTGATGCCCTTCTTCCAGGCGTAGATCTGCGCCCGGTTGATGTCGCGGGTGGTGGCG 226 Query 58527 GTATCTGGGAAGAACAGCGTGAGAGACATGCCCTGGTCTACCCAAGGAGATGCTACAGCG 58586 || || ||||||||||||| || |||| |||||||| || | | || | || Sbjct 227 GTGTCGCGGAAGAACAGCGTCAGCGACAGTCCCTGGTCGACATGGCGGGTGGCCTCGGCA 286 Query 58587 TACATATCAATGATCGGGTTAGGTCCGATAGCGTAAGCGCTATCAATTGATTCTACATTC 58646 || | || |||||| | || ||||| |||| ||| | | || || Sbjct 287 TAGGTGTCGATGATCTTTTCCGGGCCGATCTCGTAGGCGTCCTGGTAGAACTCCTGGTTG 346 Query 58647 TCATTGGTCACTCCGTACTGAGGGTAATAGACTCGACCAAGCTTACCCTCCTTGCGAACC 58706 || | || || | | ||||| ||||| || || ||||| || |||||||| | | Sbjct 347 TCGTCGGCCAGGTAGGGCGCCGGGTAGTAGACGCGGCCCAGCTTGCCTTCCTTGCGGATC 406 Query 58707 TCAAC--AGGAGAGGTCACAGGGTGAA---TCGAGGCCGTGGCATGGTTAATGTACGAGA 58761 || || || || | | ||||| | ||||| |||| ||||| ||||| |||| Sbjct 407 TCCACCTTGGCGACG--ATGGGGTGGATGCTCGAG---GTGGAGTGGTTGATGTAGGAGA 461 Query 58762 TAGAGCCGGTTGGTGGGATCGCCTGGAGGTTCTGGTTG 58799 | |||||||| || ||||| ||||||||||| ||||| Sbjct 462 TCGAGCCGGTCGGCGGGATGGCCTGGAGGTTGCGGTTG 499 >seq34909 Length=2663 Score = 183 bits (202), Expect = 1e-41 Identities = 253/349 (72%), Gaps = 4/349 (1%) Strand=Plus/Minus Query 60081 TCATAAGGAGAGAATAGGGCCATAGGCTCGCTCTCCTTGGCAAGGCGGAACGTGACATCA 60140 || || || ||||| || ||||| |||| |||| |||||||| |||| |||| || Sbjct 1278 TCGTAGGGCGAGAACAGCGCCATCGGCTGATTCTCTTTGGCAAGCTGGAAGGTGATGTCC 1219 Query 60141 GGAACGATAACTCCTAGGGAGAGAGTCTTAATACGGATCTTCTCGTCGGCGTTTTCACGC 60200 || | | || || || || || || ||||| ||||| ||||||||||||||||| ||| Sbjct 1218 GGGATCACCACGCCCAGCGACAGGGTTTTAATGCGGATTTTCTCGTCGGCGTTTTCGCGC 1159 Query 60201 TTGGTATCCAG-GAACGCAAGGATGTCGGGGTGGTGTGCGTTCAAATATACCGCCCCTGC 60259 ||||||||||| |||| || ||||| || ||||| || | | | || || || || Sbjct 1158 TTGGTATCCAGAAAACGTAA-AATGTCAGGATGGTGAGCACTGAGCCAGACTGCGCCCGC 1100 Query 60260 GCCCTGCCTTGCACCCAGTTGGTTAGAGTAGGAGAAGCTATCTTCTAGAATCTTCATCAC 60319 ||||| | ||| |||| ||||||| |||||||| |||||| || || ||||| || Sbjct 1099 TCCCTGACGTGCGCCCAACTGGTTAGCATAGGAGAACGCATCTTCCAGCATTTTCATGAC 1040 Query 60320 AGGGATGACTCCAGAGGCCTGACCTTCTCGACCCTTAATCGGAGCTCCTGCCTCGCGGAG 60379 || ||||| || || | ||| ||| | ||||||||| || || ||||| || || Sbjct 1039 CGGAATGACGCCGGAAGACTGGTTTTCAATGCGCTTAATCGGCGCACCGGCCTCCCGCAG 980 Query 60380 GTTGGAGAA-TCCAATGCCGACTCCGCCACCACGCTTAGACAGCTGGAG 60427 ||| || || || ||| || ||||| || || || |||||||| || Sbjct 979 GTTCGACAACAGGAACGCC-ACGCCGCCGCCGCGTTTGGACAGCTGCAG 932 >seq51529 Length=714 Score = 140 bits (154), Expect = 1e-28 Identities = 283/416 (68%), Gaps = 8/416 (2%) Strand=Plus/Minus Query 58400 GCAGCTTAGGCAACCTTCCACTTCCGTGCCTTCTACCGACTTA-GCAGAGGTTCGGATGT 58458 |||||| | ||| || || || || ||||| || | | | | || | | | ||||||| Sbjct 521 GCAGCTGACGCAGCCCTCGACCTCGGTGCCCTCGAGGGCCATCTGCCG-GATGCGGATGT 463 Query 58459 AGTACAGAGACTTCAGGCCCTTCTTGTGAGCGTAGATCTGCGCTCGGTTAATGTCTCGCG 58518 |||| | | ||| | |||||| |||||||||||||| ||||| ||||| |||| Sbjct 462 AGTAGATCGTCTTGATGCCCTTGCGCCACGCGTAGATCTGCGCGCGGTTGATGTCGCGCG 403 Query 58519 TTGTCGCTGTATCTGGGAAGAACAGCGTGAGAGACATGCCCTGGTCTACCCAAGGAGATG 58578 | || || || || ||||||||| || || |||||||||||||| || | | | Sbjct 402 TCGTGGCGGTGTCCTTGAAGAACAGGGTCAGCGACATGCCCTGGTCCACGTGCCGGGTCG 343 Query 58579 CTACAGCGTACATATCAATGATCGGGTTAGGTCCGATAGCGTAAGCGCTATCAATTGATT 58638 | | ||||| | || |||||| | || ||||| |||| ||| || | | Sbjct 342 CGGCGGCGTAGACGTCGATGATCTTCTCGGGGCCGATCTCGTACGCGTCCTCGTAGTACT 283 Query 58639 CTACATTCTCATTGGTCACTCCGTACTG---AGGGTAATAGACTCGACCAAGCTTACCCT 58695 | | || || || |||| | || | ||||| ||||| || || ||||| |||| Sbjct 282 CCAGGTTGTCGTTCGTCA---TGAACGGCGCCGGGTAGTAGACACGGCCGAGCTTGCCCT 226 Query 58696 CCTTGCGAACCTCAACAGGAGAGGTCACAGGGTGAATCGAGGCCGTGGCATGGTTAATGT 58755 ||||||| | ||| | |||| | ||||| ||||||| || | | ||| |||| Sbjct 225 CCTTGCGGATCTCGATCTTGGAGGCGATCGGGTGGATCGAGGAGGTCGAGTTGTTGATGT 166 Query 58756 ACGAGATAGAGCCGGTTGGTGGGATCGCCTGGAGGTTCTGGTTGTAAATACCATGC 58811 | |||||| || || || |||| |||||| |||||||||||| | || || ||| Sbjct 165 AGCTGATAGACCCCGTCGGCGGGACCGCCTGCAGGTTCTGGTTGAAGATGCCGTGC 110 >seq29968 Length=897 Score = 122 bits (134), Expect = 4e-23 Identities = 201/283 (71%), Gaps = 8/283 (3%) Strand=Plus/Plus Query 60150 ACTCCTAGGGAGAGAGTCTTAATACGGATCTTCTCGTCGGCGTTTTCACGCTTGGTATCC 60209 ||||| || || || || ||||| | ||||| || || || || ||||| ||| | || Sbjct 26 ACTCCAAGAGAAAGTGTTTTAATCCTAATCTT-TCATCAGCATTCTCACGTTTG-TGTCA 83 Query 60210 AGGAACGCAAGGATGTCGGGGTGGTGTGCGTTCAAATATACCGCCCCTGCGCCCTGCCTT 60269 || || || | ||||| || || | || ||||||| || || || |||||||| | | Sbjct 84 AGAAA-GCTAAAATGTCTGGATGAAGA-CGCTCAAATAAACAGCACCAGCGCCCTGACGT 141 Query 60270 GCACCCAGTTGGTTAGAGTAGGAGAAGCTATCTTCTAGAATCTTCATCACAGGGATGACT 60329 ||||| |||||||||| || ||||| |||||| | || |||||||||||||| || Sbjct 142 GCACCAAGTTGGTTAGCATATGAGAAAGCATCTTCCAACATTTTCATCACAGGGATAACA 201 Query 60330 CCAGAGGCCTGACCTTCTCGAC--CCTTAATCGGAGCTCCTGCCTCGCGGAGGTTGGAGA 60387 || || | |||||| | ||| |||||| || || | || || | ||| || | Sbjct 202 CCTGAAGATTGACCT--TTGACTTTCTTAATAGGTGCATTCGATTCACGCAAGTTAGATA 259 Query 60388 ATCCAATGCCGACTCCGCCACCACGCTTAGACAGCTGGAGAGA 60430 || ||| || || |||||||||||||| || || ||||| Sbjct 260 ATAGAATTGAAACACCACCACCACGCTTAGATAGTTGTAGAGA 302 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 225369536882000