Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_009818.1 Length=36409 Score E Sequences producing significant alignments: (Bits) Value seq74251 156 1e-33 seq98912 104 5e-18 seq1029 80.6 6e-11 >seq74251 Length=708 Score = 156 bits (172), Expect = 1e-33 Identities = 324/471 (69%), Gaps = 30/471 (6%) Strand=Plus/Minus Query 2773 CATGAAATCAAGGCGCTGCGCCCGTTCATTCGCCGC--GACTTCACCAAGCTGCTCCCGA 2830 || ||| ||||||| |||| || ||| || ||| ||| || || ||| |||| Sbjct 684 CAGGAACTCAAGGCCCTGCAACCTTTCCGCCGACGCTCGAC--CAAAAACCTGTTCCCCG 627 Query 2831 CCGACGTCTATTCATGC--GACGGCCACACGTTCGACGCCGAGGTCCAGCACCCGATGCA 2888 ||||||| ||| | |||||||||| ||||||||||||| || |||| || Sbjct 626 GGGACGTCT--TCACGGCGGACGGCCACAAGTTCGACGCCGAGATCATCAACCCTCTGAC 569 Query 2889 CGGCCGGCCCTTCCGGCCGGAAATCACCACCATCATCGACATCCGTACCCGTCGAATTCC 2948 |||| ||| | | | |||||||||||||| | |||||| || ||||| || | Sbjct 568 GGGCCAGCCGTACAGACCGGAAATCACCACGGTTATCGACGTCGCCACCCGGCGCGTAGT 509 Query 2949 GGGATGGTCCACCGGCTTGGCTGAGTCGGCCCTGGTGGTGGTCGATGCCCTGCGCGACGC 3008 ||| || |||| ||| ||||||||| | | ||| | || | |||||| ||||| Sbjct 508 GGGTATTTCGGTCGGCGAGGCCGAGTCGGCCATCGGTGTGCTGGACG-CCTGCGTGACGC 450 Query 3009 CTGCACCAAGGGCG-GCATTCCGGCCATCTTCTACGTGGACAACGGCTCGGGCTACATCA 3067 | | || || |||| || | |||||||||||||| || ||||||| | || Sbjct 449 CATC----CGGTCGTGCATGTTCGCTGTGTTCTACGTGGACAATGGTTCGGGCTTCGCCA 394 Query 3068 ACCACATGATGCGCGACGAGGCGGTCGGCCTTATGGGCCGCCTGGGCATCGA-CATGAAA 3126 | ||| ||||||| ||||| ||| |||||||||| ||| ||||| Sbjct 393 ATGACACAGTGCGCGA------GGTCG------TGGACCGCCTGGGCGGCGACCATGACG 346 Query 3127 AACAGCCTGCCCTACAACAGCCAGGCGCG-GGGCGTGATTGAGCGCGTCCACCAGAGCCT 3185 || |||||||||||||||||||| || || | || | ||||| | |||||||| | | Sbjct 345 CACTCGCTGCCCTACAACAGCCAGGCACGCGGTCCTG-TCGAGCGAG-CCACCAGACCAT 288 Query 3186 GTGGATTCGGGCCGCCAAGGAACTGCCCGGATACATCGGCGCCGACATGGA 3236 ||| | || |||||| | ||| || | ||||||||||| |||||||| Sbjct 287 TTGGGTCAATGCGGCCAAGAAGCTGACCAGCTACATCGGCGCAGACATGGA 237 >seq98912 Length=625 Score = 104 bits (114), Expect = 5e-18 Identities = 222/328 (68%), Gaps = 14/328 (4%) Strand=Plus/Plus Query 8707 AAAATCCACATCGCCAAGACCCAGCTCGGCATGGACGATGACACCTATCGCGCATTGCTC 8766 || |||||| | ||||||| |||| | |||||| || |||| |||||| || ||||| Sbjct 173 AAGATCCACGTTGCCAAGAAAGAGCTAGCCATGGATGACGACAGCTATCGAGCGATGCTC 232 Query 8767 GCTCGCGTCGCGGGCGTGCGCTCGGCCAAGGACTTAGGGCCGCGCCAGGTCGATCAGGTG 8826 || ||||| || || ||| ||| | ||||| | || ||||||||||||| | ||| Sbjct 233 GCCCGCGTGGCCGGTGTGACTTCGTCTAAGGATCTCGGCCCGCGCCAGGTCGGTGCCGTG 292 Query 8827 CTGGTCGAACTCCAGCGCTTGGGCTGGAAACCGAAGAGCAATCGGCAAGGCCGGGCGACG 8886 || ||| || |||||||||| ||||| || ||| |||||||| | | Sbjct 293 CTACGCGAGTTCGAGCGCTTGGGATGGAAGCCAAAG----------CCGGCCGGGCCAAG 342 Query 8887 CCAAAAG-TGCCGCAAAACCGGCAAACCGTGCTGCGCAAAATCACCGCGCTCCTGGCCAG 8945 || | | || | | | | ||| || | || | |||| ||| |||| |||||| Sbjct 343 CCGCATGCGGCGGTAGATCGGGCGAAGCTTG-TCGGCAAGATCGAGGCGCAACTGGCCGA 401 Query 8946 CGCCCATCGCCCCTGGAGCTACGCCGA-CCACATGGCCCGGCGCATGTTCCAGGTCGAGC 9004 || ||||| ||| ||||||||| ||| ||||| ||| | | ||||||||| Sbjct 402 GGCTGGCCGCCCTTGGGACTACGCCGATGCAC-TGGCCAAGCGACTTTATAAGGTCGAGC 460 Query 9005 GGGTCGAGTGGCTGGACGACAGCCAGCT 9032 | | || ||||| || | || ||||| Sbjct 461 GCCTGGAATGGCTCGATGCCAAACAGCT 488 >seq1029 Length=3852 Score = 80.6 bits (88), Expect = 6e-11 Identities = 108/148 (73%), Gaps = 7/148 (5%) Strand=Plus/Minus Query 8504 GACATGTACCAGGGAACGGCTGATGCACTCGATCTGATCTGCGCGGCCGGTGGCTTCGCC 8563 || ||||||||| | || || || || || || | ||||||||| ||||| |||||| Sbjct 3762 GAGATGTACCAGAGGACCGCCGAGGCCCTGGACCGGATCTGCGCCGCCGGCAGCTTCGAA 3703 Query 8564 GAGCCGGCCGAGGCGGTCACCTTGCTCCTACACAACGTTGCCGA---AATTGCTGAGCGT 8620 ||| |||||||| | | ||| |||| | ||| |||||| ||| || ||||| Sbjct 3702 CAGCGGGCCGAGGTGTTGACCCTGCTGATCCACTC---TGCCGATCAAATCGCCCAGCGT 3646 Query 8621 GACGCGTCACGTTTTG-CCGAATTGATC 8647 ||| ||||||||||| ||||| || || Sbjct 3645 GACATGTCACGTTTTGCCCGAAATGGTC 3618 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 116207112630600