Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_009821.1 Length=164270 Score E Sequences producing significant alignments: (Bits) Value seq33108 140 3e-28 seq33499 122 9e-23 seq34305 118 1e-21 >seq33108 Length=3479 Score = 140 bits (154), Expect = 3e-28 Identities = 137/177 (77%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 53327 TTCGGTAAAGGTACGCGCGATAACGTCACGCTGCTGGTCTGGAGTCAGACTATTGAAGCG 53386 ||| ||||||||||| || || ||||||||||| || || || ||||| ||| ||||| Sbjct 2959 TTCCGTAAAGGTACGGGCAATGACGTCACGCTGTTGTTCAGGCGTCAGCGAATTAAAGCG 2900 Query 53387 CACCGCGTAACCAGAAACGCGAATTGTAAGCTGCGGGTACTTCTCAGGATGTTCAACAGC 53446 ||| || || || ||||| ||||| || |||||||| |||||||||||||||| || || Sbjct 2899 CACGGCATACCCGGAAACACGAATGGTCAGCTGCGGATACTTCTCAGGATGTTTCACGGC 2840 Query 53447 GTCCAGCAACATTTCTCGTAACAATACGTTAACATTCAAATGCTGACCACCTTCGAC 53503 ||| || | |||| || || |||||||| || || ||||| || ||||| || Sbjct 2839 GTCTTCCAGCGTTTCACGGCGCAGGACGTTAACGTTTAAGTGCTGCCCGCCTTCCAC 2783 >seq33499 Length=26748 Score = 122 bits (134), Expect = 9e-23 Identities = 308/462 (67%), Gaps = 10/462 (2%) Strand=Plus/Minus Query 117338 CTCGCGGGGTAAGTGACCTGATAGTCTTTGTTCTGGTTCCTTTCCCGCCTAGCTTAGAAT 117397 |||| || | ||||| | || |||||||||||| |||||| || ||||| || | Sbjct 642 CTCGGGGTGAGAGTGATCGTATCATCTTTGTTCTGGCTCCTTTACCACCTAGTTTTTTGT 583 Query 117398 GCTGTTTACTGTACCCTTTATTAA-TATGCAAC-GGTTTCTTTTCTGGCATTATAAAGCC 117455 |||||||| || || | || || ||| ||||| || ||||| | ||| Sbjct 582 GCTGTTTAGAATAACCACTCGAAACGAT--AACAGGTTTTTTCGGTGGCAGCACTAAGTT 525 Query 117456 TTGTCCGGTCCATAAGCAAGTCTTTTTCGGGTACATATCACGGGCGGCAATATACTCAGG 117515 | ||| ||||| | ||| |||||||| || || ||| | || |||||||| || Sbjct 524 ATTTCCAGTCCAAAGGCAGGTCTTTTTTGGATAAGCATCCCTAGCTTTTATATACTCTGG 465 Query 117516 AAACGTAGGATGTTTATCATCTTCCGGCAAATAACCGCCATATTCCCACGGATGGAACAT 117575 |||| |||||| |||||| || ||||| || ||||| || | ||||| ||||| Sbjct 464 AAACAGAGGATGGATATCATTCATTGGTAAATACCCCCCATACTCGTAGGGATGAAACAT 405 Query 117576 GTAATCAGGCTTACGCCACATACTAGAGATAACGCTTACAGGATTCTCTATCATGTAGGG 117635 | | |||||||| | |||||| | || | || |||||| || ||||| | ||| || Sbjct 404 GAAGTCAGGCTTCCTCCACATCGTTGACAAGACAGATACAGGGTTTTCTATTAGGTATGG 345 Query 117636 A-ACTCCTAGCC--ATTCACCCAAATAAGCGGTTATTTTAGCTGCCCGTACATCATGAAC 117692 | |||| | | ||||||| | ||| || ||||| || |||| | || | | ||| Sbjct 344 ACACTCAAAAACATATTCACCAAGATATGCTGTTATCTTGGCTGTTCTGACCGCTTCAAC 285 Query 117693 TTGAATCAATGGTCCTTGTTCTCGTTTCTTTCGTTCAAAGTGTGCAGCGCCACTAACAGC 117752 ||||| || || || | || |||| |||||| || || ||||| || || Sbjct 284 TTGAAACAGAGGATTTTTTAATCTTTTC---GATTCAAACCAAGCCGCACCACTTACTGC 228 Query 117753 TAAATTGGTGCACGGTGGGAATGCAAATATAATATCCGGTTT 117794 | | || || ||||| |||| |||| | || ||||| Sbjct 227 CATGTCTGTACATGGTGGAAATGATAATAGTAAGTCTGGTTT 186 >seq34305 Length=2218 Score = 118 bits (130), Expect = 1e-21 Identities = 137/185 (74%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 53316 AATTAGAGAGATTCGGTAAAGGTACGCGCGATAACGTCACGCTGCTGGTCTGGAGTCAGA 53375 || ||||| || | |||||||||||| | || ||||| ||||||| ||| || || Sbjct 584 AACTAGAGTGACTGGGTAAAGGTACGGGTAATCACGTCCTGCTGCTGCTCTTTGGTGAGC 643 Query 53376 CTATTGAAGCGCACCGCGTAACCAGAAACGCGAATTGTAAGCTGCGGGTACTTCTCAGGA 53435 || ||||| || || || || |||||||| || || | ||| || || |||||||| Sbjct 644 GAGTTAAAGCGAACGGCATAGCCCGAAACGCGGATGGTTAACTGAGGATATTTCTCAGGG 703 Query 53436 TGTTCAACAGCGTCCAGCAACATTTCTCGTAACAATACGTTAACATTCAAATGCTGACCA 53495 | || | ||||||| ||||||||| || || ||||||||||||| |||||| || Sbjct 704 TTATCCATTGCGTCCATCAACATTTCCCGGTTCATCACGTTAACATTCAGATGCTGGCCG 763 Query 53496 CCTTC 53500 ||||| Sbjct 764 CCTTC 768 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 524680033240000