Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq28556 127 5e-24 seq70467 125 2e-23 seq50444 116 9e-21 seq27421 116 9e-21 seq44974 105 2e-17 >seq28556 Length=388 Score = 127 bits (140), Expect = 5e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || || || |||| ||| || | |||| || || ||||| || || || || | | Sbjct 56 CCGCCACGAAGTCGAAGGACCAAGTGAAGGGTAGACTCCTTTTGAATGTTGTAATCAGAG 115 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || || ||||| | || ||||| |||||||| |||||||| || || Sbjct 116 AGGGTACGGCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAGGA 175 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || |||||||| |||||||| |||| || || || || || | ||| || |||||| Sbjct 176 ATGCCTTCTTTGTCCTGGATCTTCGACTTGACATTGTCAATGGTATCCGAAGACTCTACT 235 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || |||||||| ||||| ||||| || ||||||||||| || |||||| Sbjct 236 TCTAGCGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATTTGCATT 283 >seq70467 Length=697 Score = 125 bits (138), Expect = 2e-23 Identities = 252/366 (69%), Gaps = 16/366 (4%) Strand=Plus/Minus Query 72432 GAGTTGTATGGAAAAGTGCAAGAAATTCCTCAGACGGAAAATACTCCGTTTTATCCTCGA 72491 ||| ||| || ||||| |||| ||||| || | ||| | || || |||||||| || Sbjct 591 GAGATGTTCGGTAAAGTCCAAGCGATTCCGCAAAGCGAACA-ACACCATTTTATCCACGT 533 Query 72492 AGCCCTTACGGTGTTGCAAAGTTGTACGCTTATTGGAT--CTGTAAAAATTACCGTGAGT 72549 |||||||||||||| || ||| |||||| | | ||||| | || || || |||||| Sbjct 532 AGCCCTTACGGTGTAGCGAAGCTGTACGGTCACTGGATTACCGTTAAC--TATCGTGAGA 475 Query 72550 CGTATAACATGTATGTATGCAACTCGATTTGTTTCAATCACGAGAGTCCCAACA--GAGG 72607 | | |||| | ||| | ||| ||||| |||||| |||| || | || Sbjct 474 GCTTCGATATGTTCGCTTGCTCCGGTATTCTGTTCAACCACGAG--TCCCCACGCCGCGG 417 Query 72608 CCATCAGTTCGTGACTCGTAAAATCACGAAGGTGGTCGCGAATATTTTCAAT---GGTGT 72664 | ||||||| || |||||| | ||| | | || || | || ||| ||| | Sbjct 416 ACTGGAGTTCGTTACACGTAAAGTAACGGACGGTGTAGCACAGAT---CAAGCTGGGTCT 360 Query 72665 CGAAAAATGCATGTATCTCGGTAATATAGATGCCAAAAGAGATTGGGGATATGCGAAGGA 72724 | |||| | | | ||||||||| | ||||| || | |||||||| | ||| || Sbjct 359 GGCAAAA-GAACGCGTCTCGGTAACCTGGATGCGAAGCGCGATTGGGGCTTTGCAGGTGA 301 Query 72725 TTACGTAGAAGCAATGTGGTTGATGCTGCAACAAGATACTCCGGATGACTATGTGATTGC 72784 |||||| ||||||||||| | ||||||||||| ||||| ||||| || ||||| || | Sbjct 300 CTACGTAAAAGCAATGTGGCTCATGCTGCAACAGGATACACCGGACGATTATGTCATCTC 241 Query 72785 AACAGG 72790 ||||| Sbjct 240 TACAGG 235 >seq50444 Length=3642 Score = 116 bits (128), Expect = 9e-21 Identities = 261/378 (69%), Gaps = 18/378 (5%) Strand=Plus/Minus Query 72447 GTGCAAGAAATTCCTCAGACGGAAAATACTCCGTTTTATCCTCGAAGCCCTTACGGTGTT 72506 |||||||| || || || | |||| || || || || || || |||||||| | ||| Sbjct 936 GTGCAAGAGATACCCCAAAAAGAAACGACACCATTCTACCCACGCAGCCCTTATGCTGTG 877 Query 72507 GCAAAGTTGTACGCTTATTGGAT--CTGTAAAAATTACCGTGAGTCGTATAACATGTATG 72564 || || |||| || || ||||| | || || || || || || || ||||||| Sbjct 876 GCTAAAATGTATGCATACTGGATTACCGTCAAC--TATCGCGAATCTTACGGAATGTATG 819 Query 72565 TATGCAACTCGATTTGTTTCAATCACGAGAGTCCCAACAGAGGCCATCAGTTCGTGACTC 72624 || ||| ||||| || |||||||| ||| | | ||| | ||||| || | Sbjct 818 CCTGTAACGGGATTTTGTTTAATCACGAATCTCCACGCCGTGGCGAAACTTTCGTAACAC 759 Query 72625 GTAAAATCACGAAGGTGG--TCGCGAATATT-TTCAATGGTGTCGAAA-AATGCATGTAT 72680 |||||||||| | |||| | ||||||||| |||| || | |||| | || | ||| Sbjct 758 GTAAAATCAC--ACGTGGTATGGCGAATATTGCTCAA-GGACTTGAAACTACGC-TCTAT 703 Query 72681 CTCGGTAATATAGATGCCAAAAGAGATTGGGGATATGCGAAGGATTACGTAGAA--GCAA 72738 | || || || ||||| | |||||||| |||| || ||||| ||| || ||| Sbjct 702 ATGGGCAACATGGATGCACTCCGCGATTGGGGCCATGCAAAAGATTATGTAAAAATGCA- 644 Query 72739 TGTGGTTGATGCTGCAACAAGATACTCCGGATGACTATGTGATTGCAACAGG-GAAAACA 72797 |||| |||||||||| || || || || || |||| ||| |||||||| || | | Sbjct 643 -GTGGATGATGCTGCAGCAGGAAACGCCTGAGGACTTTGTTATTGCAACGGGCGTTCAGT 585 Query 72798 ACGAGCGTTCGTGAGTTC 72815 || ||||| ||||||||| Sbjct 584 AC-AGCGTACGTGAGTTC 568 >seq27421 Length=7303 Score = 116 bits (128), Expect = 9e-21 Identities = 256/375 (68%), Gaps = 14/375 (4%) Strand=Plus/Plus Query 72447 GTGCAAGAAATTCCTCAGACGGAAAATACTCCGTTTTATCCTCGAAGCCCTTACGGTGTT 72506 || || |||||||| || | |||| ||| || ||||| || || || ||||| | ||| Sbjct 1550 GTTCAGGAAATTCCACAAAAAGAAACTACGCCATTTTACCCACGTAGTCCTTATGCTGTA 1609 Query 72507 GCAAAGTTGTACGCTTATTGGAT--CTGTAAAAATTACCGTGAGTCGTATAACATGTATG 72564 ||||| |||| || || ||||| ||||||| || ||||| | ||| ||||||| Sbjct 1610 GCAAAAATGTATGCATACTGGATTACTGTAAAC--TATCGTGAAGCTTATGGTATGTATG 1667 Query 72565 TATGCAACTCGATTTGTTTCAATCACGAGAGTCCCAACAGAGGCCATCAGTTCGTGACTC 72624 || || ||| | ||||| || || ||| | ||| | || || || | Sbjct 1668 CGTGTAATGGGATCTTATTCAACCATGAATCTCCGCGTCGTGGCGAAACATTTGTAACGC 1727 Query 72625 GTAAAATCACGAAGGTGG--TCGCGAATATTTTCAATGGTGTCGAAAAATGCATGTATCT 72682 | ||||| || | |||| | ||||||||| | | || | |||| | || ||| | Sbjct 1728 GCAAAATTAC--ACGTGGCATGGCGAATATTGCCCAAGGCCTTGAAACAGCAATCTATAT 1785 Query 72683 CGGTAATATAGATGCCAAAAGAGATTGGGGATATGCGAAGGATTACGT--AGAAGCAATG 72740 || || || ||||| ||||||||||| | || || ||||| || | | |||| Sbjct 1786 GGGCAACATGGATGCACTGCGAGATTGGGGACACGCTAAAGATTATGTCAAAATGCAA-- 1843 Query 72741 TGGTTGATGCTGCAACAAGATACTCCGGATGACTATGTGATTGCAACAGGGAAAACAA-C 72799 ||| |||||||||||||||| || || |||| ||||||||| || ||| ||| Sbjct 1844 TGGATGATGCTGCAACAAGAGCAGCCAGAAGACTTTGTGATTGCGAC-GGGTGTTCAATA 1902 Query 72800 GAGCGTTCGTGAGTT 72814 |||||||||||||| Sbjct 1903 TAGCGTTCGTGAGTT 1917 >seq44974 Length=881 Score = 105 bits (116), Expect = 2e-17 Identities = 169/243 (70%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 269098 GAAGCAGTTACAAACGAAAAAGAGTTCATTTGTGACGCTATCCCATGTTCTATGATCGGT 269157 || || || || | ||| |||||||| | || || | ||||| || | ||||| Sbjct 504 GATGCTGTCACCATCGAGCAAGAGTTCTTGACAGAGGCATTGCCATGCGCTCTCCTCGGT 445 Query 269158 ATGAATGCCGATCTCATGAATCAATATATCGAATTCGTGGCTGATCGTATCTTCACGGCA 269217 ||||| ||| | ||||| || || || |||||||| || ||||| || | ||| Sbjct 444 ATGAACGCCACGTTGATGAAGCAGTACATTGAATTCGTCGCCGATCGCCTCCTGGTTGCA 385 Query 269218 CTCGGTTATGAGAAAGTGTACAATTCGAAGAATCCCTTCGCCTTTATGGAACTAATTTCG 269277 || ||| | ||||| |||||||| | || ||||| | || ||||| ||||| Sbjct 384 CTGGGTAACGAGAAGGTGTACAAGACTGCCAACCCCTTTGATTTCATGGAGAACATTTCC 325 Query 269278 CTCGAAGGAAAGACGAACTTCTTCGAAAAGCGTGTCAGCGACTATCAACGTCCTGGTGTA 269337 || | || |||||||||||||| || ||||| ||| |||| |||||| ||||||| Sbjct 324 CTAGGCGGCAAGACGAACTTCTTTGAGAAGCGAGTCGGCGAGTATCAAAAGGCTGGTGTC 265 Query 269338 ATG 269340 ||| Sbjct 264 ATG 262 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177685003843400