Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq70467 125 2e-23 seq50444 116 8e-21 seq27421 116 8e-21 seq65101 84.2 5e-11 >seq70467 Length=697 Score = 125 bits (138), Expect = 2e-23 Identities = 252/366 (69%), Gaps = 16/366 (4%) Strand=Plus/Minus Query 68421 GAGTTGTATGGAAAAGTGCAAGAAATTCCTCAGACGGAAAATACTCCGTTTTATCCTCGA 68480 ||| ||| || ||||| |||| ||||| || | ||| | || || |||||||| || Sbjct 591 GAGATGTTCGGTAAAGTCCAAGCGATTCCGCAAAGCGAACA-ACACCATTTTATCCACGT 533 Query 68481 AGCCCTTACGGTGTTGCAAAGTTGTACGCTTATTGGAT--CTGTAAAAATTACCGTGAGT 68538 |||||||||||||| || ||| |||||| | | ||||| | || || || |||||| Sbjct 532 AGCCCTTACGGTGTAGCGAAGCTGTACGGTCACTGGATTACCGTTAAC--TATCGTGAGA 475 Query 68539 CGTATAACATGTATGTATGCAACTCGATTTGTTTCAATCACGAGAGTCCCAACA--GAGG 68596 | | |||| | ||| | ||| ||||| |||||| |||| || | || Sbjct 474 GCTTCGATATGTTCGCTTGCTCCGGTATTCTGTTCAACCACGAG--TCCCCACGCCGCGG 417 Query 68597 CCATCAGTTCGTGACTCGTAAAATCACGAAGGTGGTCGCGAATATTTTCAAT---GGTGT 68653 | ||||||| || |||||| | ||| | | || || | || ||| ||| | Sbjct 416 ACTGGAGTTCGTTACACGTAAAGTAACGGACGGTGTAGCACAGAT---CAAGCTGGGTCT 360 Query 68654 CGAAAAATGCATGTATCTCGGTAATATAGATGCCAAAAGAGATTGGGGATATGCGAAGGA 68713 | |||| | | | ||||||||| | ||||| || | |||||||| | ||| || Sbjct 359 GGCAAAA-GAACGCGTCTCGGTAACCTGGATGCGAAGCGCGATTGGGGCTTTGCAGGTGA 301 Query 68714 TTACGTAGAAGCAATGTGGTTGATGCTGCAACAAGATACTCCGGATGACTATGTGATTGC 68773 |||||| ||||||||||| | ||||||||||| ||||| ||||| || ||||| || | Sbjct 300 CTACGTAAAAGCAATGTGGCTCATGCTGCAACAGGATACACCGGACGATTATGTCATCTC 241 Query 68774 AACAGG 68779 ||||| Sbjct 240 TACAGG 235 >seq50444 Length=3642 Score = 116 bits (128), Expect = 8e-21 Identities = 261/378 (69%), Gaps = 18/378 (5%) Strand=Plus/Minus Query 68436 GTGCAAGAAATTCCTCAGACGGAAAATACTCCGTTTTATCCTCGAAGCCCTTACGGTGTT 68495 |||||||| || || || | |||| || || || || || || |||||||| | ||| Sbjct 936 GTGCAAGAGATACCCCAAAAAGAAACGACACCATTCTACCCACGCAGCCCTTATGCTGTG 877 Query 68496 GCAAAGTTGTACGCTTATTGGAT--CTGTAAAAATTACCGTGAGTCGTATAACATGTATG 68553 || || |||| || || ||||| | || || || || || || || ||||||| Sbjct 876 GCTAAAATGTATGCATACTGGATTACCGTCAAC--TATCGCGAATCTTACGGAATGTATG 819 Query 68554 TATGCAACTCGATTTGTTTCAATCACGAGAGTCCCAACAGAGGCCATCAGTTCGTGACTC 68613 || ||| ||||| || |||||||| ||| | | ||| | ||||| || | Sbjct 818 CCTGTAACGGGATTTTGTTTAATCACGAATCTCCACGCCGTGGCGAAACTTTCGTAACAC 759 Query 68614 GTAAAATCACGAAGGTGG--TCGCGAATATT-TTCAATGGTGTCGAAA-AATGCATGTAT 68669 |||||||||| | |||| | ||||||||| |||| || | |||| | || | ||| Sbjct 758 GTAAAATCAC--ACGTGGTATGGCGAATATTGCTCAA-GGACTTGAAACTACGC-TCTAT 703 Query 68670 CTCGGTAATATAGATGCCAAAAGAGATTGGGGATATGCGAAGGATTACGTAGAA--GCAA 68727 | || || || ||||| | |||||||| |||| || ||||| ||| || ||| Sbjct 702 ATGGGCAACATGGATGCACTCCGCGATTGGGGCCATGCAAAAGATTATGTAAAAATGCA- 644 Query 68728 TGTGGTTGATGCTGCAACAAGATACTCCGGATGACTATGTGATTGCAACAGG-GAAAACA 68786 |||| |||||||||| || || || || || |||| ||| |||||||| || | | Sbjct 643 -GTGGATGATGCTGCAGCAGGAAACGCCTGAGGACTTTGTTATTGCAACGGGCGTTCAGT 585 Query 68787 ACGAGCGTTCGTGAGTTC 68804 || ||||| ||||||||| Sbjct 584 AC-AGCGTACGTGAGTTC 568 >seq27421 Length=7303 Score = 116 bits (128), Expect = 8e-21 Identities = 256/375 (68%), Gaps = 14/375 (4%) Strand=Plus/Plus Query 68436 GTGCAAGAAATTCCTCAGACGGAAAATACTCCGTTTTATCCTCGAAGCCCTTACGGTGTT 68495 || || |||||||| || | |||| ||| || ||||| || || || ||||| | ||| Sbjct 1550 GTTCAGGAAATTCCACAAAAAGAAACTACGCCATTTTACCCACGTAGTCCTTATGCTGTA 1609 Query 68496 GCAAAGTTGTACGCTTATTGGAT--CTGTAAAAATTACCGTGAGTCGTATAACATGTATG 68553 ||||| |||| || || ||||| ||||||| || ||||| | ||| ||||||| Sbjct 1610 GCAAAAATGTATGCATACTGGATTACTGTAAAC--TATCGTGAAGCTTATGGTATGTATG 1667 Query 68554 TATGCAACTCGATTTGTTTCAATCACGAGAGTCCCAACAGAGGCCATCAGTTCGTGACTC 68613 || || ||| | ||||| || || ||| | ||| | || || || | Sbjct 1668 CGTGTAATGGGATCTTATTCAACCATGAATCTCCGCGTCGTGGCGAAACATTTGTAACGC 1727 Query 68614 GTAAAATCACGAAGGTGG--TCGCGAATATTTTCAATGGTGTCGAAAAATGCATGTATCT 68671 | ||||| || | |||| | ||||||||| | | || | |||| | || ||| | Sbjct 1728 GCAAAATTAC--ACGTGGCATGGCGAATATTGCCCAAGGCCTTGAAACAGCAATCTATAT 1785 Query 68672 CGGTAATATAGATGCCAAAAGAGATTGGGGATATGCGAAGGATTACGT--AGAAGCAATG 68729 || || || ||||| ||||||||||| | || || ||||| || | | |||| Sbjct 1786 GGGCAACATGGATGCACTGCGAGATTGGGGACACGCTAAAGATTATGTCAAAATGCAA-- 1843 Query 68730 TGGTTGATGCTGCAACAAGATACTCCGGATGACTATGTGATTGCAACAGGGAAAACAA-C 68788 ||| |||||||||||||||| || || |||| ||||||||| || ||| ||| Sbjct 1844 TGGATGATGCTGCAACAAGAGCAGCCAGAAGACTTTGTGATTGCGAC-GGGTGTTCAATA 1902 Query 68789 GAGCGTTCGTGAGTT 68803 |||||||||||||| Sbjct 1903 TAGCGTTCGTGAGTT 1917 >seq65101 Length=1111 Score = 84.2 bits (92), Expect = 5e-11 Identities = 109/151 (72%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 297436 TGTGAAAATATATCGTGCACTCGCGTGATCCTTACCACCCTGCAATCTCGAACCGAACTG 297495 |||| |||| || | || || || ||| ||| |||| | || ||||| || | Sbjct 369 TGTGTAAATGTACCTGGCGCTAGCAGCATCAGCACCGCCCTTGAGTCGGGAACCAAAGTT 310 Query 297496 GCCCTCCGGCAACAACCAGTTGATGTTATTGCTTCCGACATAATCCTGTGCAAGGTTCAC 297555 ||| ||| ||| ||||||||||||| | |||||| ||||||| || || || || Sbjct 309 GCCACTAGGCTCCAAGTAGTTGATGTTATTTGTGCCGACAAAATCCTGGGCGAGATTGAC 250 Query 297556 GATGGTCCCTTGCAGAGATGCTTCGCCATGG 297586 ||||| ||||||| ||| |||||||||||| Sbjct 249 AATGGTGCCTTGCATAGAAGCTTCGCCATGG 219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1101038776305000