Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_010105.1 Length=170523 Score E Sequences producing significant alignments: (Bits) Value seq31280 179 4e-40 seq49234 145 8e-30 seq50823 113 5e-20 >seq31280 Length=10079 Score = 179 bits (198), Expect = 4e-40 Identities = 288/411 (70%), Gaps = 2/411 (0%) Strand=Plus/Plus Query 141924 CATCAGGTCGTTTAACTGGATTCCGTAGTCCATATGACGAATACGGTTCTCATCGACACC 141983 ||||| | ||| | ||| | ||||||||||| ||||| | ||||| | || ||||| Sbjct 1332 CATCATTTTGTTGAGCTGCACACCGTAGTCCATGTGACGTACGCGGTTACCTTCCACACC 1391 Query 141984 TTTGTTGTTTTTCAAAACGAGCAGATTTTCAACTTCCAAATGCCAAATAGGATA-ATAAG 142042 ||||||||||| || | ||| |||| ||||||| |||||| || ||||| | || Sbjct 1392 ACGGTTGTTTTTCAGGACTAACAGGCTTTCTACTTCCAGATGCCACATCGGATAGAACAG 1451 Query 142043 CAGTAGCAGCGCCGCCACGGATTCCACCTTGTGAACATGATTTAACAGCAGTCTGGAAAT 142102 | || || ||||||||||||| || || || ||||| ||||| || || |||||||| | Sbjct 1452 C-GTCGCTGCGCCGCCACGGACGCCGCCCTGCGAACAGGATTTCACCGCTGTCTGGAAGT 1510 Query 142103 GTTTCCAGAATGGAATAACACCGGTATGTTTGACTTCACCCATGCCAATACGAGAACCTT 142162 | || |||| || ||| ||||||||| ||||||| || ||| | || Sbjct 1511 GCTTGTAGAACGGGATACAACCGGTATGGAAAGCTTCACCGCCGCGAATCGGGCTGCCCA 1570 Query 142163 CAGCACGAATCATACCAACGTTGATACCAATACCTGCACGTTTAGAAATGTATTCAATTA 142222 || || || ||| |||| |||||||||||||| |||| |||| ||||| | | Sbjct 1571 GCGCGCGGATACGACCCGCGTTAATACCAATACCTGCGCGTTGTGAAACGTATTTCACAA 1630 Query 142223 TTGAGTTGGCAGTTTTGTTAATAGATTTCAGCGAGTCGCCTGCTTCAATAACCACACAAG 142282 | | | ||| || ||| || || | ||| |||||| |||||| | ||||| | Sbjct 1631 TAGCGCTGGAGGTCGCGTTGATGGAATCCAGGCTGTCGCCACATTCAATCAGGACACAGG 1690 Query 142283 AACTAAATTGACGAGTTGGAGTACGTGCACCAGCCATAATAGGAGTAGGCA 142333 | || || ||||| ||||| ||||| | || | ||| || || || |||| Sbjct 1691 AGCTGAACTGACGGGTTGGCGTACGCACTCCCGACATGATTGGCGTCGGCA 1741 >seq49234 Length=879 Score = 145 bits (160), Expect = 8e-30 Identities = 167/216 (77%), Gaps = 9/216 (4%) Strand=Plus/Plus Query 58881 TTATCATAAAAGAATGTAACGTGGCCTGTACCAAGGATAAAAGTAGGGCTGATTTTAAAA 58940 |||| ||| || |||||||| || |||||||| | || | |||| |||||||||||| Sbjct 364 TTATTATAGAA-AATGTAACATGACCTGTACCTAA-ATGTAGGTAGTACTGATTTTAAAA 421 Query 58941 TCACGAACACGTTTACC-GTTAGCAACATGCTTACGAACTGCACCGAAAACACGTGGTAA 58999 ||| | |||||||| | | | || ||||||||||| |||||||| |||||||| || Sbjct 422 TCATTGATTCGTTTACCAGCTTG-TACGTGCTTACGAACAGCACCGAATACACGTGGCAA 480 Query 59000 TTCACGATATTCAGCCATTAAGTGTTGGTCAGCCAATTCAGATACTAAGGTA--AGGTTG 59057 |||||| ||||||||||| | ||||||||||| ||||| |||| |||| || ||| Sbjct 481 TTCACGGTATTCAGCCATAAGATGTTGGTCAGCTAATTCTTGTACT--GGTACGAGATTG 538 Query 59058 ATACGAGTCATTTTTAA-TCTCCTGTAGTTGATAGG 59092 ||||| |||||| || |||||| || |||||| Sbjct 539 ATACGGGTCATTCAAAATTCTCCTTTATAAGATAGG 574 >seq50823 Length=3276 Score = 113 bits (124), Expect = 5e-20 Identities = 143/193 (74%), Gaps = 3/193 (2%) Strand=Plus/Plus Query 58887 TAAAAGAATGTAACGTGGCCTGTACCAAGGATAAAAGTAGGGCTGATTTTAAAATCACGA 58946 ||||| || ||||| || ||||| ||||| ||| | | || |||||||||||| | Sbjct 128 TAAAAAAAGGTAACATGTCCTGTTCCAAGAATATAGCTTTTACTTATTTTAAAATCATTA 187 Query 58947 ACACGTTTACCGTTAGCAACATGCTTACGAACTGCACCGAAAACACGTGGTAATTCACGA 59006 | | ||| || | |||| || || | |||||||| || |||||||||||||||||| Sbjct 188 ATAT-TTTCCCAGCATCAACGTGTTTCCTTACTGCACCAAATACACGTGGTAATTCACGA 246 Query 59007 TATTCAGCCATTAAGTGTTGGTCAGCCAATT-CAGATACTAAGGTAAGGTTGATACGAGT 59065 ||||||||||| | ||||| || ||||||| | || | | ||| || || ||||| Sbjct 247 TATTCAGCCATCAGATGTTGATCGGCCAATTCCTGAACCGGAACTAA-ATTTATCCGAGT 305 Query 59066 CATTTTTAATCTC 59078 |||||| ||| || Sbjct 306 CATTTTAAATATC 318 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 544657042604000