Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_010106.1 Length=52975 Score E Sequences producing significant alignments: (Bits) Value seq36028 347 4e-91 >seq36028 Length=2231 Score = 347 bits (384), Expect = 4e-91 Identities = 657/964 (68%), Gaps = 16/964 (2%) Strand=Plus/Plus Query 51992 TCATTCTTCTGGCGACCGGAAGAGGTAGACGTTTCCCAGGACCGTATTGATTATCAGAAG 52051 || ||||||||||| || ||||| || || || || | || || || || || ||| Sbjct 9 TCGTTCTTCTGGCGTCCTGAAGAAGTCGATGTCTCACGCGATCGCATCGACTACCAGGCC 68 Query 52052 CTACCTGCAAACGAACAACACATTTTCACCAGTAATCTTCGTTATCAGATTCTTCTTGAC 52111 || || | | ||| | || || |||| ||| || || || |||| | || ||| Sbjct 69 CTGCCCGATCATGAAAAGCATATCTTCATCAGCAACCTGAAATACCAGACGTTACTGGAC 128 Query 52112 TCAATTCAGGGACGTGGGCCCAACACAGTTTTGCTTCCAATCGTGAGCATTCCTGAATTG 52171 || ||||||||||| | || ||| | |||| || | | ||||| ||| || Sbjct 129 TCGATTCAGGGACGCAGCCCGAACGTGGCACTGCTGCCGCTGATCTCGATTCCGGAACTG 188 Query 52172 GAGACGTGGATTGAAACCTGGTCTTTCTCCGAGACTATTCATTCACGTTCTTATACCCAC 52231 || || ||||| ||||||||| | |||||||| || || || || || || || |||||| Sbjct 189 GAAACCTGGATAGAAACCTGGGCGTTCTCCGAAACGATCCACTCTCGCTCGTACACCCAC 248 Query 52232 ATCATTCGTAATATTGTTACAGACCCAAGCATTATCTTTGATGAAATCGTAACTAACGAA 52291 |||||||| || || || | || || | | ||||| || ||||| || ||| | Sbjct 249 ATCATTCGCAACATCGTGAACGATCCGTCTGTGGTGTTTGACGATATCGTCACCAACCAG 308 Query 52292 CACATCAAGGCACGAGCAATTGGCATCTCCCAATATTATGACGAACTCCAGCAACTCACT 52351 || || ||| || || | |||||| | || || || || || | | ||| Sbjct 309 CAGATTCTGGCGCGTGCGCAGGACATCTCTAAGTACTACGATGACCTGATTGAGATGACT 368 Query 52352 GCATTATGGCAGTTGTTCGGAGAAGGGAGCCATGCTGGTCAT--GAAA-----------T 52398 | ||||| ||| | || ||||| | ||| | ||||| | || | Sbjct 369 AACTACTGGCATTTGCTGGGTGAAGGTACGCAT-CAGGTCAATGGTAAGTCCATTACGGT 427 Query 52399 TAGTCTGCGTGAGTTGAAGAAGAAGCTGTATTTATGCCTCATGTCTATCAATGCATTGGA 52458 || | |||| | | |||| ||| || ||||| | ||||| ||| ||||||| |||| Sbjct 428 TAATGTGCGCGCGCTGAAAAAGCAGTTGTATATTTGCCTGATGAGCGTCAATGCGCTGGA 487 Query 52459 AGCAATTCGCTTCTATGTCAGCTTTGCTTGCTCATTTGCCTTCGCAGAACGTAAGTTAAT 52518 ||| || |||||||| ||||||||||| ||||| ||||| || || || || | | || Sbjct 488 AGCGATCCGCTTCTACGTCAGCTTTGCCTGCTCTTTTGCGTTTGCTGAGCGAGAACTGAT 547 Query 52519 GGAAGGAAATGCCAAGATTATTCGCTTAATTGCACGAGATGAAGCACTTCATTTGACAGG 52578 |||||| || ||||| || || | |||||||| || ||||| || || |||| || Sbjct 548 GGAAGGCAACGCCAAAATCATCAAGCTGATTGCACGCGACGAAGCTCTGCACCTGACCGG 607 Query 52579 AACTCAGCACATGCTGAACCTTCTTGCAAGTGGAAAAGATGACCCAGAAATGGGTGAAAT 52638 || |||||||||||||| || || | || |||| || || |||||| ||||| Sbjct 608 CACCCAGCACATGCTGAATCTGCTGCGCACCGGTGAAGACGATCCTGAAATGAAAGAAAT 667 Query 52639 TGCTGCTGAATGCCGCCAAGAATGCCAGAAATTGTTCGAAGATGCTGCTCAACAAGAGAA 52698 ||| || |||||||| |||| ||| | |||| | | || || ||| ||||| Sbjct 668 TGCCGCCGAATGCCGTGAAGAGTGCTTCGAGCTGTTTAAGAAAGCGGCCTTACAGGAGAA 727 Query 52699 GGATTGGGCCGATTATTTGTTCAAAGATGGCTCTATGATTGGCTTAAACAAGCAAATTCT 52758 || ||||| ||||| |||||| | ||||| ||||| || | ||||| | || || Sbjct 728 AGAGTGGGCAGATTACCTGTTCAGCGGCGGCTCCATGATCGGTCTGAACAAAGATATCCT 787 Query 52759 ATGCGGATATGTGGAATATATCACGAATATTCGTATGCAAGCAGTTGGATTAGATGCTCC 52818 ||| ||| | ||||| ||||| || ||||||||||| || ||||| | ||| || Sbjct 788 GTGCCAGTATATCGAATACATCACCAACATTCGTATGCAGGCGGTTGGCCTCGATCTGCC 847 Query 52819 ATTC-AAAGGTGCAACTAACCCGATTCCGTGGATTAATGCATGGTTGAATTCGGATGCTG 52877 ||| ||| | || | ||||||||||| ||||| || || ||| || || ||| | Sbjct 848 GTTCGAAACGCGC-TCGAACCCGATTCCCTGGATCAACGCCTGGCTGGTGTCCGATAACG 906 Query 52878 TACAGGTTGCTCCACAGGAAACGGAGATTAGTTCCTACCTGGTCGGGCAAATTGACTCCG 52937 | |||||||| || |||||| ||| | ||||| |||||||| || || ||||| || | Sbjct 907 TTCAGGTTGCCCCGCAGGAAGTGGAAGTCAGTTCTTACCTGGTGGGTCAGATTGATTCAG 966 Query 52938 AAGT 52941 |||| Sbjct 967 AAGT 970 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 169136287738200