Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_010237.1 Length=63395 Score E Sequences producing significant alignments: (Bits) Value seq43257 123 1e-23 seq47236 109 2e-19 seq44976 86.0 3e-12 seq64133 82.4 3e-11 >seq43257 Length=1618 Score = 123 bits (136), Expect = 1e-23 Identities = 186/263 (71%), Gaps = 1/263 (0%) Strand=Plus/Minus Query 27987 GCATGGGTGGAGAAAAACATCAAAGTGCCGCTGACCGAACCCCAGAAAGCGGGGATCGCG 28046 || ||||| || |||| | | | || || ||||||||||| ||||| | || || ||| Sbjct 873 GCCTGGGTAGATAAAA-CGTACACGTTCCACTGACCGAACCGCAGAAGGTTGGCATAGCG 815 Query 28047 TCATTCTGTCCGTACAACATTGGTCCCGGTAAGTGTTTCCCGTCGACGTTTTACAGACGA 28106 ||||||||||||| |||||||| |||||||| || | || || ||||| ||| | | Sbjct 814 TCATTCTGTCCGTGGAACATTGGCCCCGGTAAATGCCTGCCATCAACGTTCTACCGGAAA 755 Query 28107 ATTAATGCAGGTGATCGAAAAGGTGCCTGCGAAGCTATTCGCTGGTGGATTAAGGACGGT 28166 | || ||||| ||||| ||||| || | || || | ||||| ||||| Sbjct 754 CTAAACGCAGGCGATCGCCTGGGTGCATGTGCAGAGATAAAGCGCTGGATATTCGACGGC 695 Query 28167 GGCAGAGACTGCCGTATTCGTTCAAACAACTGTTACGGTCAGGTATCCCGTCGTGACCAG 28226 || | ||| ||||| ||||| || || ||||||||| || || ||| ||||||||| Sbjct 694 GGGAAAGATTGCCGCATTCGCTCTAATGGCTGTTACGGGCAAGTTATCCGCCGTGACCAG 635 Query 28227 GAGAGCGCGCTGGCGTGCTGGGG 28249 || | ||| | |||||||| Sbjct 634 GAATCAGAGCTCACATGCTGGGG 612 >seq47236 Length=1665 Score = 109 bits (120), Expect = 2e-19 Identities = 125/168 (74%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 29355 AAAGCGCAGCGCGATAAAAAAGCCAGAGAGCTGGAACAGGCGAATGCCACCATTACTGAC 29414 ||| ||||||| ||||| | | || ||| | ||| || ||||| |||| |||| Sbjct 744 AAATCGCAGCGGGATAAGGCCTCTGGCGAACTGAAGTTGGCAAACGCCACGATTAATGAC 685 Query 29415 ATGCAGGTGCGCCAGCGTGATGTTGCTGCGCTCGATGCAAAATACTCGAGGGAGTTAGCC 29474 |||||||| || ||||| || |||||||| |||||||| ||||| | | ||||||||| Sbjct 684 ATGCAGGTACGTCAGCGAGACGTTGCTGCCCTCGATGCGAAATATACCAAGGAGTTAGCT 625 Query 29475 GATGCGAGAGCTGAAAATGAAACTCTGCGTGCTGATGTTGCCGCTGGT 29522 ||||||| |||||||||| | || || ||| | | || |||||| Sbjct 624 GATGCGAACACTGAAAATGACAGGCTTCGCGCTAAGCTGGCTGCTGGT 577 >seq44976 Length=557 Score = 86.0 bits (94), Expect = 3e-12 Identities = 133/185 (72%), Gaps = 4/185 (2%) Strand=Plus/Minus Query 18460 CCGGAAGACTGGAAAGACCTGTTCACTGCCCT-GTGGCTTAAGACCAAAAAACTGGAGCA 18518 || || |||||||||||||| |||||||||| || || ||||||||||| |||| Sbjct 218 CCTGACGACTGGAAAGACCTCATCACTGCCCTCGTAGCA-AAGACCAAAAACGAACAGCA 160 Query 18519 ACGAAGTGTGCCTGGTATCGACGGTGGCGTTGTCATGCTTGGCGTGCGTACCAGCAGAAT 18578 || | | || ||||||| ||| ||||| |||||| | || ||| || |||| ||| Sbjct 159 GCGCACCGCACCCGGTATCGGCGGAGGCGTGGTCATGTTCGGATCGCGGACAAGCAAAAT 100 Query 18579 GC-GGAAGGCCAGTATGACTGAGCTTATCGAAATCATGTTCTGGTTCGGCTCAGAGCGCA 18637 || || | || | ||| ||| ||||||| || | |||||| ||| | |||| | Sbjct 99 GCGGGTAAGCGA-AATGGTTGAAGTTATCGAGGCAATTTACTGGTTTGGCACTGAGCAAA 41 Query 18638 ACGTG 18642 ||||| Sbjct 40 ACGTG 36 >seq64133 Length=746 Score = 82.4 bits (90), Expect = 3e-11 Identities = 164/237 (69%), Gaps = 12/237 (5%) Strand=Plus/Minus Query 29423 GCGCCAGCGTGATGTTGCTGCGCTCGATGCAAAATACTCGAGGGAGTTAGCCGATGCG-- 29480 |||||||| | |||||| | | ||||| |||||| ||| ||| || ||||||||| Sbjct 430 GCGCCAGCTTTCGGTTGCTTCCATTGATGCCAAATACACGAAGGA-TTGGCCGATGCGCA 372 Query 29481 AGAGCTGAAAATGAAACTCTGCGTGCTGATGTTGCCGCTGGTCGTAAGCGCCTGCGGATC 29540 | | | | || ||||||| ||||| | |||| |||||||||||| || Sbjct 371 AAAACCATTAGCGA---TCTGCGTAGGGATGTCGATTCTGGGGCTAAGCGCCTGCGCGTC 315 Query 29541 AACGCCACCTGC--TCCGGTACCGTGCG-TGAAGCCACCGGCACCTCCGGCGTGGATAAT 29597 |||| || || | | || || | || || ||| |||| |||||||| || Sbjct 314 TCAGCCAAATGTGTTCGGCCAGTGTCCGGTAAATCCTCCGCCACCC---GCGTGGATGAT 258 Query 29598 GCAACCGGCCCCCGACTGGCAGACACCGCTGAACGGGATTATTTCATCCTCAGAGAG 29654 | | |||||||||| ||||| ||||| | ||||||||||||| |||||||||| Sbjct 257 GATGGCAGCCCCCGACTTACAGACGCCGCTCAGCGGGATTATTTCACCCTCAGAGAG 201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 202417243814800