Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq28556 147 2e-30 seq29103 107 2e-18 seq2641 104 2e-17 >seq28556 Length=388 Score = 147 bits (162), Expect = 2e-30 Identities = 170/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 |||||| || | || ||| || | |||| || || || ||||||||||||||||| | Sbjct 55 ACCGCCACGAAGTCGAAGGACCAAGTGAAGGGTAGACTCCTTTTGAATGTTGTAATCAGA 114 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 || ||| || | ||||| |||||||| ||||| | ||||| ||||||||||| ||||| Sbjct 115 GAGGGTACGGCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAGG 174 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||| |||||||| || || || || ||| ||| || | ||||| | || || Sbjct 175 AATGCCTTCTTTGTCCTGGATCTTCGACTTGACATTGTCAATGGTATCCGAAGACTCTAC 234 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 ||||| || | |||||||||||| | || || ||||| ||||||||| Sbjct 235 TTCTAGCGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATTTGCATT 283 >seq29103 Length=1863 Score = 107 bits (118), Expect = 2e-18 Identities = 143/196 (73%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 64246 CGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCC 64305 |||||| || |||||||||||||| ||||| | ||||| |||| ||||||||||| || Sbjct 1092 CGTCGACTCCTTTTGAATGTTGTAGTCTGCAAGAGTGCGGCCGTCCTCAAGCTGCTT-CC 1150 Query 64306 GGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTT 64365 |||| | || || ||||||||||| || ||||| || || || || || || || ||| Sbjct 1151 GGCA-AGATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTT 1209 Query 64366 TACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGT 64425 ||| || | || || || || || || | || | ||||||||| |||| || Sbjct 1210 GACATTGTCGATCGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGT 1269 Query 64426 TTTTACGAAAATTTGC 64441 || |||||| || || Sbjct 1270 CTTCACGAAACTTGGC 1285 >seq2641 Length=263 Score = 104 bits (114), Expect = 2e-17 Identities = 148/207 (71%), Gaps = 1/207 (0%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || || || | || ||| || ||||| | || |||||||| |||||||||||||| || Sbjct 246 CCACCACGAAGTCGAAGAACCAGATGCAGAGTAGATTCTTTCTGAATGTTGTAATCGGCA 187 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||| || | ||||| | |||||| || ||| | ||||| || || || ||||| ||| Sbjct 186 AGGGTTCGACCATCTTCCAACTGCTTACCAGCAAAGATGAGTCGTTGTTGATCGGGGGGA 127 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 || || || || ||||| |||| | || ||| || | ||||| | || ||| Sbjct 126 ATACCCTCCTTGTCTTGAATTTGGT-TTTGACATTGTCGATAGTATCCGAAGATTCAACT 68 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAA 64423 || | || | ||||||||||||||| Sbjct 67 TCAAGGGTGATAGTCTTGCCGGTCAAA 41 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 498831003532000