Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_010342.1 Length=39245 Score E Sequences producing significant alignments: (Bits) Value seq50247 354 2e-93 seq42978 122 2e-23 >seq50247 Length=1652 Score = 354 bits (392), Expect = 2e-93 Identities = 548/770 (71%), Gaps = 27/770 (4%) Strand=Plus/Plus Query 21275 GATGTCTAAACCATTCATTCAGTGGATGGGCGGCAAGCGCCGCCTGGCTAAACATATCCT 21334 |||||| ||| |||||| |||||||||||||||||||| || || | | ||| | Sbjct 674 GATGTCCGCACCGATCATTCCCTGGATGGGCGGCAAGCGCCGTCTCGCCGACCGAATCTT 733 Query 21335 GCCGAACTTCCCTGACCACCAGTGCTACGTTGAGCCCTTCGCGGGCGGCGCGGCGCTGTT 21394 ||| ||||| | ||| |||||||| ||||||||||| || ||||| ||| |||| Sbjct 734 CCCGCTGTTCCCCAAGCACAGCTGCTACGTCGAGCCCTTCGCCGG-GGCGCCGCGTTGTT 792 Query 21395 CTTCATGAAGCA---ACCCAGCAAAGTGGAGGTGATCAACGACACCAACAGCGACCTGGT 21451 |||| | | |||| | | ||||||||| |||||||| |||| |||||||||| Sbjct 793 CTTCCTTCGCCCGGTACCCGCCGAGGTGGAGGTGCTCAACGACGTCAACGGCGACCTGGT 852 Query 21452 CAACTTGTACCGGGTGGTGCAGCACCACCTGGAGGAGTTCGTGCGCCAGTTCAAGTGGGC 21511 ||| | |||||||| || ||||||||||||||||||||||| ||||||||||||||||| Sbjct 853 CAATCTCTACCGGGTCGTCCAGCACCACCTGGAGGAGTTCGTCCGCCAGTTCAAGTGGGC 912 Query 21512 GCTGGTCTCGCGTGAGATGTTCGCGTGGGAGAAGCTCAAGCACACCGACACGCTAACGGA 21571 |||| ||| || || | ||| ||| | || | | | || | || ||||| || || Sbjct 913 GCTGAGCTCCCGCCAGGTCTTCAAATGGCTGCAGATGACGAACCCGGAGACGCTGACCGA 972 Query 21572 TATCCAGCGGGCCGCGCGGTTCTACTACCTGCAGCAGCAGGGGTTTGGCGGGAAGGTCAA 21631 |||||||| ||||| || |||||||||||||||||| || ||||| || |||||| Sbjct 973 CATCCAGCGCGCCGCACGCTTCTACTACCTGCAGCAGTCGGCCTTTGGTGGCAAGGTCGC 1032 Query 21632 C--TCGAACTTTGG----CATCTCGACCACGTCTGGCCCTGGGCTTAACCTGCTGCGGAT 21685 | | || || | | | |||||||| | ||||| || ||||||||||| | Sbjct 1033 CGGCCAGACGTTCGGTACCGCCACGACCACGCC---GCCTGGCCTGAACCTGCTGCGCCT 1089 Query 21686 CGAGGAGAACC--TCAGCCAGGCGCACTTGCGGCTCTCGCGCGTGTTCGTTGAGAACATG 21743 |||||||| || || || |||||| |||| || || || | || ||| || || Sbjct 1090 CGAGGAGACCCTGTCGGC--TGCGCACCTGCGCCTATCCGAGGTCTATGTCGAGCACCTG 1147 Query 21744 GACTGGAAAGCGGTCATGAAGCGC---TACGACCGGCCGCACACGTTGCACTATCTCGAC 21800 | |||| | || | | |||| ||||||||| ||||||| | ||| | ||| Sbjct 1148 GCCTGGCA---GGACTGCATGCGCAAATACGACCGGGAGCACACGCTCTTCTACATGGAC 1204 Query 21801 CCGCCGTATTGGGCGACCGCTGGCTA-TGATTGCGAGTTCCCGTTCGAGGAGTATGAGGC 21859 ||||| || |||| ||| | || || | ||| ||| |||||| ||||||||| Sbjct 1205 CCGCCCTACTGGGAGACGGAAGGGTACGGCATGC-CCTTCGGCTTCGAGCAGTATGAGGA 1263 Query 21860 GATGGCCACGCTTGC-GCGGGAGGTGCAGGGGAAGGTGATCATCTCGATCAACGATCACC 21918 ||||||| || ||| | | || | |||| |||| ||||||| |||||||||||| Sbjct 1264 GATGGCC-CGGATGCTGGGCCAGCTCAAGGGCAAGGCGATCATCAGCCTCAACGATCACC 1322 Query 21919 CTGACATACGCCAGGTGTTCGACGGGCTGCGGATCGAGGAGGTGTCGCTCAACTACACGG 21978 | | ||| ||| || ||| | | | | |||||||||| | | |||||||||||| Sbjct 1323 CGGCCATCCGCGAGTGCTTCAAGGCGTTCCGGATCGAGGCGACCGAGATCAACTACACGG 1382 Query 21979 TGGGCGCGAGCAACAGTAAGAAGGCCAAGGAGCTGGTGATTTACAACTGG 22028 |||||| |||| | | ||||| |||| || |||| | || |||| Sbjct 1383 TGGGCGGTGGCAAGGGCAGCAAGGCTGGGGAGGTGCTGATCTTCAGCTGG 1432 >seq42978 Length=612 Score = 122 bits (134), Expect = 2e-23 Identities = 178/248 (72%), Gaps = 3/248 (1%) Strand=Plus/Plus Query 21360 TACGTTGAGCCCTTCGCGGGCGGCGCGGCGCTGTTCTTCATGAAGCAACCCAGCAAAG-T 21418 ||||| || | ||||| |||||||| |||||| | ||| || | || || ||| | Sbjct 354 TACGTCGAAGCATTCGCCGGCGGCGCAGCGCTGCTGTTCGCCC-GCGAGCCGGCGAAGGT 412 Query 21419 GGAGGTGATCAACGACACCAACAGCGACCTGGTCAACTTGTACCGGGTGGTGCAGCACCA 21478 || ||||||||||| | |||| ||||| | | || || || ||| |||| Sbjct 413 CGAAGTGATCAACGATGTGCATGGCGAGCTGGTGCGCCTCTATCGCGTTGTGGCCAACCA 472 Query 21479 CCTGGAGGAGTTCGTGCGCCAGTTCAAGTGGGCGCTGGTCTCGCGTGAGATGTTCGCGTG 21538 |||||| |||||| ||||||||| | |||||| ||| || || |||||| ||| Sbjct 473 CCTGGACGAGTTCATGCGCCAGTCCG-GTGGGCACTGACGAGCCGCGAAATGTTCAAGTG 531 Query 21539 GGAGAAGCTCAAGCACACCGACACGCTAACGGATATCCAGCGGGCCGCGCGGTTCTACTA 21598 || | ||||| ||||| | || ||||| || || || ||||| || || ||||||| ||| Sbjct 532 GGCGCAGCTCCAGCACCCTGAAACGCTCACTGACATTCAGCGTGCGGCTCGGTTCTTCTA 591 Query 21599 CCTGCAGC 21606 |||||||| Sbjct 592 CCTGCAGC 599 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 125268270460200