Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_010353.1 Length=35543 Score E Sequences producing significant alignments: (Bits) Value seq115158 1079 0.0 seq123790 316 5e-82 seq125025 309 7e-80 seq125381 266 7e-67 seq30831 149 1e-31 >seq115158 Length=1188 Score = 1079 bits (1196), Expect = 0.0 Identities = 827/970 (85%), Gaps = 7/970 (1%) Strand=Plus/Plus Query 24381 GAGCTCAAAGGAAATATCGAAGAAGTTAAAAAATTAGTAGATCGAAACTTGAGAGGATGA 24440 ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 220 GAGCTAAAAGGAAATATAGAAGAAGTTAAAAAATTAGTAGATCGAAACTTGAGAGGATGA 279 Query 24441 ATAATAAAATGATTAATTTTAAATTACGTTTGCAAAATAAAACTACACTAGTAGCTCTTA 24500 | |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 280 AGAATAAA-TGATTAATTTTAAATTACGTTTGCAAAATAAAACTACACTAGTAGCTCTTA 338 Query 24501 TCTCAGCAGTATTCCTTATGCTGCAACAATTAGGGCTTCATATCCCTAGCAACATTCAAG 24560 |||||||||||||||||||| ||||||||||||||||| | || || ||| || |||| Sbjct 339 TCTCAGCAGTATTCCTTATGTTGCAACAATTAGGGCTTGAAATTCCACACAATATCCAAG 398 Query 24561 AGGGAGTAAAAACCTTTGTGGGAATTTTGGTTATTCTTGGAATCTTGACAGACCCAACAA 24620 | | ||||| || || | | |||||||||||| || |||||| | || |||||||| | Sbjct 399 ACGCTGTAAATACATTCATTGCAATTTTGGTTATCCTCGGAATCGTTACCGACCCAACCA 458 Query 24621 CTAAAGGAATCGGTGACAGCGAACGAGCATTGACTTACATCAAACCACTAGACGATAAGG 24680 |||| || || | ||||||||||||||||||| || ||||||||||||| |||| Sbjct 459 CTAAGGGGATTGCAGACAGCGAACGAGCATTGAGCTATGAACAACCACTAGACGAAAAGG 518 Query 24681 AAGGAAAATAGTATGAGTGTT-CAACAATCTATTGTAAATTGGTTCGTTAACAATCGAGG 24739 ||||||||||||||||| | | ||||||||||||||||||||||| |||||| ||||||| Sbjct 519 AAGGAAAATAGTATGAGCGATACAACAATCTATTGTAAATTGGTTTGTTAACCATCGAGG 578 Query 24740 TAAATTGACCTATTCAATGTATGGGTCACGTAATGGGTCAGACGGCACTGCTGACTGCTC 24799 ||||||||||||||||||||||||||||| || || ||||||| || ||||||||||| Sbjct 579 CAAATTGACCTATTCAATGTATGGGTCACGCAACGGAGCAGACGGTACAGCTGACTGCTC 638 Query 24800 TGGTTCTATGTCACAAGCCTTAAAAGAAGCTGGTGTTGGTATCCAAGGATTGCCGTCAAC 24859 |||||| || ||||||||| |||||||||||||| ||||||| ||||| | || || || Sbjct 639 TGGTTCCATATCACAAGCCCTAAAAGAAGCTGGTATTGGTATTCAAGGTCTACCATCTAC 698 Query 24860 AGTAACCCTAGGTCAACAACTAGCAAACAACGGTTTCTATCATGTAAGTATTAATCAGGA 24919 || || |||||||||||||| || || || || ||||||| |||||||||||||| || Sbjct 699 TGTTACACTAGGTCAACAACTTGCCAAAAATGGATTCTATCGAGTAAGTATTAATCAAGA 758 Query 24920 TTGGGATGCTGAAACTGGTGATATTGTAATGATGTCATGGGGTGCTGACATGTCACAATC 24979 |||||||||| || || |||||||| | |||||||||||| |||| ||||| ||| Sbjct 759 TTGGGATGCTTTGACAGGCGATATTGTGTTAATGTCATGGGGTTCTGATATGTCCACATC 818 Query 24980 TGGCGGAGCTGGGGGTCACGTTGGTGTCATGATGGATAGTGTAAACTTCATTAGTTGCGA 25039 |||||||||||| || ||||||||||||||||||||| | | |||| ||||||||||| Sbjct 819 TGGCGGAGCTGGAGGGCACGTTGGTGTCATGATGGATGCTACATACTTTATTAGTTGCGA 878 Query 25040 CTATTCAACTCAAGGAGCAGTAGGCCAAGCTATCAATACTTACCCATGGAACGACTACTA 25099 |||||||||||||| ||| || |||||||||||||||||||| ||||| |||||||| Sbjct 879 TTATTCAACTCAAGGGGCACCTGGGCAAGCTATCAATACTTACCCGTGGAATGACTACTA 938 Query 25100 TGTAGCTAATAAGCCTTCATACATTGAAGTGTGGCGTTATGCTGATACTGCCCCACAAAC 25159 || ||| || |||||| |||| || || |||||||||||| |||| ||||| || ||||| Sbjct 939 TGCAGCGAACAAGCCTGCATATATCGAGGTGTGGCGTTATTCTGACACTGCACCGCAAAC 998 Query 25160 AAATAATCAAGCGAATACTGC-GGTAG-TGCCACAGTCTAAAGCTTACTATGAAGCTAAT 25217 || || ||||| ||||| || | ||| ||||| || |||||||||||||||||| Sbjct 999 CAACAACCAAGCTAATACAGCAGCTAGACACCACAACAAAAGGCTTACTATGAAGCTAAT 1058 Query 25218 GAAGTCAAATATGTTAA-CGGTATTTTCCAAATTAAATGTGACTATTTGGCACC-CGTTG 25275 ||||| ||| ||||| || |||| || || |||||||||||||||||||| |||| Sbjct 1059 GAAGTTCAATTCGTTAATGGGAATTTGGCAGATCAAATGTGACTATTTGGCACCTGGTTG 1118 Query 25276 GATTCGACTGGGTTAACTAATTTTCGGCTCAGTATAAACTAAGT-GAACGCAAACAAAGC 25334 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1119 GATTCGACTGGGTTAACTAATTTTCGGCTCAGTATAAACTAAGTGGAACGCAAACAAAGC 1178 Query 25335 GGTGTCATGC 25344 |||||||||| Sbjct 1179 GGTGTCATGC 1188 >seq123790 Length=336 Score = 316 bits (350), Expect = 5e-82 Identities = 210/232 (91%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 35309 TATACAGAAATTGGAATTCTAACACCTCGGAAGGTAATCCAATTAGAAGGGCTTCTGTCT 35368 |||||||||||||| | | |||||||||| ||||||||||||||||| || ||||||||| Sbjct 16 TATACAGAAATTGGCAGTTTAACACCTCGCAAGGTAATCCAATTAGAGGGTCTTCTGTCT 75 Query 35369 AGAGAGCTATTCGGTAAGATAGCTAAGTACGTCTTTAATAAGTATGAGTGGCCTGAAAGC 35428 ||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||| Sbjct 76 AGAGAGCTATTCGGTAAGATAGCGAAGTACGTCTTTAATAAGTATGAATGGCCAGAAAGC 135 Query 35429 CTAGATAGCGAAGTTGATCGTATCTATTTAGAATATCGCACCAAAGGTGATCTAGGTCTT 35488 |||||| | ||||||| | |||||||||||||||||||| |||||| ||||||||| | Sbjct 136 CTAGAT-GAAGAGTTGATAGAATCTATTTAGAATATCGCACTAAAGGTAATCTAGGTCGT 194 Query 35489 GAAAAGGAAAGTGTTAAACGTACACTATATAAAGCGATCTCTATGGGCTTGT 35540 || || |||||||||||||| ||||||||||||||||| ||||||||||||| Sbjct 195 GATAAAGAAAGTGTTAAACGCACACTATATAAAGCGATGTCTATGGGCTTGT 246 Score = 82.4 bits (90), Expect = 2e-11 Identities = 75/91 (82%), Gaps = 3/91 (3%) Strand=Plus/Plus Query 85 GGGTTCGACTCCCTCGTTCGTTGTTAGTCTGTCATGACTAGGTAATTTTTTCGACAAAAC 144 |||||||||||||||| ||| |||||||||||| |||||||| |||||||| ||| | | Sbjct 249 GGGTTCGACTCCCTCGCTCGCTGTTAGTCTGTCGTGACTAGGAAATTTTTT-GAC-ACTC 306 Query 145 GTCAAGCTGACAGACCTTGACAACAAATCCA 175 || ||||||||||| || ||||| ||| Sbjct 307 GTATCGCTGACAGACCGATAC-ACAAACCCA 336 >seq125025 Length=589 Score = 309 bits (342), Expect = 7e-80 Identities = 363/481 (75%), Gaps = 11/481 (2%) Strand=Plus/Minus Query 21160 TGTCTGATCGTTGGAATTTCATCGATACTTACATGAACTCATCAAATGATGGGCTTGTGA 21219 |||| || ||| ||||||| ||||||| |||||| |||||||||| || ||||| | Sbjct 482 TGTCAGAACGT-GGAATTTTATCGATAGCTACATGGCAGCATCAAATGAAGGTCTTGTTA 424 Query 21220 TTGGAAAGAA--TGACGGTAGCTCTAGCATGATGTTTAACCCTAACGGTCGCATTTCAAT 21277 |||| || || ||| ||||||| |||| || || || ||||| || || ||||| Sbjct 423 TTGGTAAAAAGATGAATCAAGCTCTATCATG---TTCAATCCAAACGGGCGTATCTCAAT 367 Query 21278 GTACTCGGCAGGGGAGGAGGTCA-TGTATA-TTTCGCAAGGTGTAATACACATCGAGAAC 21335 || ||| || ||| | ||||| | |||| | |||| ||||| | || || ||||| ||| Sbjct 366 GT-CTCAGCTGGGAACGAGGTTAATGTACAATTTCAAAAGGTATCATCCATATCGAAAAC 308 Query 21336 GGGATCTTCTCGAAAACTATCCAAGTTGGTCGATATCGTGAGGAACAGTACCATCTTAAC 21395 || || ||||| ||| |||||||| | || |||||||| |||||||| | | || Sbjct 307 GGTATTTTCTCTAAATCTATCCAAATCGGACGATATCGAGAGGAACAAGATTTATTGAAT 248 Query 21396 CCAGACATGAATGTCATTCGCTATGTAGGAGGTTTTTAATTGGCTGAATTTTGGAGTAAT 21455 |||||| ||||||||| | || ||||||||| |||| ||||||||||||||||||| Sbjct 247 CCAGACCGTAATGTCATTAGATACGTAGGAGGTGCATAAT-GGCTGAATTTTGGAGTAAT 189 Query 21456 AATGATAGAGGCTATAGGATTAGGTTATGGATTGACCAGGTTAGTCAAGACAAAGTAGCT 21515 | || | || ||| | || | | ||| | ||||||||| ||||||| | | Sbjct 188 AC-GACCGTGGATATCGTATCCGTCTTTGGGTCGACCAGGTTGGTCAAGATATCCAAAAC 130 Query 21516 AATACCAGTCAGGTCAGATTTCAACTAGCACTGCTAAATACGACTACGACTTTTGCTCAA 21575 ||||| ||||| || ||||| | | |||| | ||||||||||| || || ||||||||| Sbjct 129 AATACAAGTCAAGTTAGATTGCGATTAGCGTTACTAAATACGACAACTACGTTTGCTCAA 70 Query 21576 TATCAATGTAACGCTTATATCGAGTTTGAAGGTCAAAGATTGAATTGGTCAGGTTCACCT 21635 |||||||||| |||||| |||| ||| | |||||| ||||||||||||| ||||||||| Sbjct 69 TATCAATGTAGTGCTTATGTCGAATTTAACGGTCAACGATTGAATTGGTCTGGTTCACCT 10 Query 21636 A 21636 | Sbjct 9 A 9 >seq125381 Length=275 Score = 266 bits (294), Expect = 7e-67 Identities = 224/274 (82%), Gaps = 1/274 (0%) Strand=Plus/Minus Query 34995 TTGATAACGTGGTTAAAGAGCGTTCGAAACTATCACCTTCAACATTGGACGATATGCGCG 35054 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | | Sbjct 273 TTGATAACGTGGTTAAAGAGCGTTCGAA-CTATCACCTTCAACATTGGACGATATGAGTG 215 Query 35055 AATATCTTACGGACGGTCTAGTTAATGACTTACAAGAGTATCTATTAAAGAACTATTCAG 35114 | ||||||||| |||| ||||| |||||||||| ||||||||| | |||||||||| | Sbjct 214 AGTATCTTACGAACGGCCTAGTGAATGACTTACGAGAGTATCTGGCAGAGAACTATTCTG 155 Query 35115 TAAGACGTGGGTCATGTAAACCAGATGCTGATAAAACTAATGCAGGTCTTACAAGAGAGC 35174 ||| ||||||||| ||| ||||||||||||||| |||| || || || || | || | Sbjct 154 ACAGAAGTGGGTCATCTAAGCCAGATGCTGATAAAGCTAACGCTGGGCTGACTAAGGAAC 95 Query 35175 TCTTCCTTCAATATCGCAAGGAAATCCAAGAGTTAAGAGCAGCACACCCTAACTGCGTCA 35234 | |||| | ||| ||||||||| |||||||||||||||||||||||||| | | Sbjct 94 TTTTCCGAGAGCTTCGAAAGGAAATCGAAGAGTTAAGAGCAGCACACCCTAACCGTAACG 35 Query 35235 TAAACTACATAATGGAAGTGAAAGGCTGTACAAA 35268 | | || | |||||||||||||| || |||| Sbjct 34 CAGAATATGTTATGGAAGTGAAAGGATGCTCAAA 1 >seq30831 Length=459 Score = 149 bits (164), Expect = 1e-31 Identities = 96/105 (91%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 19845 ATGCCCTCGGCTAGCGAAGTCACAACTGCTGATTATCCAAGTTTCATCGGACAATATACA 19904 ||||| || |||||||||| |||||||||||| |||||||||||||||||||| || ||| Sbjct 105 ATGCCATCAGCTAGCGAAGCCACAACTGCTGACTATCCAAGTTTCATCGGACACTACACA 46 Query 19905 AACTATACACAAGTAGATAGTCCTAATCCTCGAGATTACACTTGG 19949 ||| ||||||||||||||||| |||||||||||||||||||||| Sbjct 45 GACTTTACACAAGTAGATAGTCTTAATCCTCGAGATTACACTTGG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 113440200543000