Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_010583.1 Length=111382 Score E Sequences producing significant alignments: (Bits) Value seq33499 580 8e-161 seq33108 105 5e-18 seq107223 95.1 9e-15 seq36301 95.1 9e-15 >seq33499 Length=26748 Score = 580 bits (642), Expect = 8e-161 Identities = 639/848 (75%), Gaps = 12/848 (1%) Strand=Plus/Minus Query 41451 TTACTTGTTACGCATATCCATGATCATTTGACCATCGTAGCCAGTACCAACAACAGTCTG 41510 ||| |||||||| |||||| |||| | ||| |||||| || ||||| ||| || || Sbjct 24100 TTATTTGTTACGAGCATCCATAATCAACTTACCTTCGTAGTCACCACCAATAACTGTTTG 24041 Query 41511 CGGTACACCACCTTG-TATTTTTCAGCACGAAGCATTTCAAACTTCCAGCTGCTTCCAAC 41569 |||||||||||||| ||||| |||||||| |||||||| |||| || || ||||||| Sbjct 24040 TGGTACACCACCTTGGTATTTCTCAGCACGTTTCATTTCAA-CTTCGAGTTGTTTCCAAC 23982 Query 41570 GAATCATTTCAGGAGTAATGGTACGTTGCAGCGCGGCGTTAGCTTCAGCTTCTTTCTTAG 41629 ||||||| || ||||| || || |||| | | |||||||||||||||||| | || Sbjct 23981 GAATCATCTCTGGAGTGATTGTTTTCTGCAACACACTGTTAGCTTCAGCTTCTTTTTGAG 23922 Query 41630 CTGCGTACAGTTTAGCATCTGCGTCACGTTCGTTAGCTACTGCCATGTTTTCACGAGCAG 41689 | || || | |||||||||||| || |||||||| || || || | ||| || Sbjct 23921 CAGCATATAATTTAGCATCTGCATCTCGTTCGTTTGCCTGGGCTTCATTATTACGGGCTT 23862 Query 41690 AACGATCAGCTTCAGCTTGCTTAACTTTCTGCTGTGCTTCTTGTTCAACACGAGCCAATT 41749 |||||||| || || | ||||||| ||||||| ||||| | || || ||| | Sbjct 23861 CTCGATCAGCCTCTGCCTTCTTAACTGCTTGCTGTGTTTCTTTAGCTACTCGGTCCAGAT 23802 Query 41750 CAGCTTTAGCGGCGTTAACTTGTTCTTCACGAACTTTTGTGTTTTGTACCTGTTCCATGA 41809 |||| | || |||||||| ||||||||||||| ||||| ||| |||||| | ||||| Sbjct 23801 CAGCCTGTGCTGCGTTAACCTGTTCTTCACGAATCTTTGTATTTGTTACCTGCTTCATGA 23742 Query 41810 TTACAGGTGGCAGAGTAATATCCTGAAGGAATACTTGCTTAACCGTGTAACCATAAGGAC 41869 ||||| |||| || ||||| || | ||| | || || || || ||||||||||||| Sbjct 23741 TTACATCAGGCAAGGTGATATCTTGCAAGAAGATTTCTTTTACAGTATAACCATAAGGAC 23682 Query 41870 GCGCGTACTCTTCTACTTC-----TTGCTGAATAGCAGTTTGCAGTTGAGCCTGAATCTT 41924 | ||||| |||| | ||| || |||||| |||| || |||||||||| Sbjct 23681 GTGCGTAGGCTTCAATTTCAGCTTTTACTGAATCC-----TGCAACTGCGCCTGAATCTC 23627 Query 41925 AGCGTCGAACAGATCTTGTGCTTTTGGTACAGACTTACCAAACTCACGAATCGTAGATAG 41984 ||||| ||||| ||| |||||||| || || || ||||||||||| || | || |||| Sbjct 23626 AGCGTTGAACAAATCCTGTGCTTTCGGGACTGATTTACCAAACTCTCGGACAGTGGATAA 23567 Query 41985 CATCTTCTCTTCAACGTACTTGTTCAGAGCTTGATCCTGAGTACCTGCGTTAACACGGTT 42044 | ||| | ||||| || || | ||||||||| || ||||| ||||| |||| ||||| Sbjct 23566 AAGCTTTTGCTCAACATATTTATCCAGAGCTTGCTCTTGAGTGCCTGCATTAATTCGGTT 23507 Query 42045 CATAGGAGCTTTAGCACCATCAAACTGCAACATAACGGTAATGTCAACAGTGGACTTAAA 42104 |||||| || |||| |||||||||||||||||||||||| || || || || || ||||| Sbjct 23506 CATAGGTGCCTTAGAACCATCAAACTGCAACATAACGGTCATATCCACTGTTGATTTAAA 23447 Query 42105 CTTATCCTGGCTAGGAACCTGAAGTTTATCCAGTTTCATGGAAATATCTTTCGTACTAAA 42164 ||||||||| || || || || | |||||| | | || |||||||| ||||| || Sbjct 23446 CTTATCCTGACTCGGTACTTGCAATTTATCATATGTTATTTTGATATCTTTTGTACTGAA 23387 Query 42165 AGTATCAAAAGAAGCAAATGGGTTAACAATATGGAAGCCTGGCAATACAGGATTAGGGCT 42224 ||| ||||| |||||||||||||| | |||||| |||||| |||||||||||| | Sbjct 23386 AGTCTCAAAGCTTGCAAATGGGTTAACCACATGGAACCCTGGCTTTACAGGATTAGGATT 23327 Query 42225 AACTTTACCCAGGAAGGTTTGGGTCTTAACAGTACCATCCTGAACAACTGTGTAGGAATT 42284 ||||||||||| |||||||| || || || |||||||| || || | | |||||||| Sbjct 23326 AACTTTACCCATAAAGGTTTGTGTTTTTACTGTACCATCTTGCACGATGATATAGGAATT 23267 Query 42285 GAGAGCCA 42292 ||||||| Sbjct 23266 TAGAGCCA 23259 >seq33108 Length=3479 Score = 105 bits (116), Expect = 5e-18 Identities = 127/173 (73%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 29172 GTAAATGTACGACTAATAACGTCGTTCTGTTGTTCACGCGTCAGTGCATTAAATCGAACA 29231 ||||| ||||| ||| ||||| |||||||||| ||||||| | |||||| || || Sbjct 2955 GTAAAGGTACGGGCAATGACGTCACGCTGTTGTTCAGGCGTCAGCGAATTAAAGCGCACG 2896 Query 29232 GCATAGCCAGAGACACGAATGGTCAACTGAGGGTATTTTTCAGGATGTTTCTGTGCATCC 29291 ||||| || || ||||||||||||| ||| || || || |||||||||||| || || Sbjct 2895 GCATACCCGGAAACACGAATGGTCAGCTGCGGATACTTCTCAGGATGTTTCACGGCGTCT 2836 Query 29292 AAAAGCTGATCACGACTTAACACATTGACATTTAGGTGCTGACCTCCCTCGAC 29344 ||| ||||| | | || || || |||| |||||| || || || || Sbjct 2835 TCCAGCGTTTCACGGCGCAGGACGTTAACGTTTAAGTGCTGCCCGCCTTCCAC 2783 >seq107223 Length=315 Score = 95.1 bits (104), Expect = 9e-15 Identities = 128/176 (73%), Gaps = 2/176 (1%) Strand=Plus/Minus Query 29158 ATTATATCGC-CTGAGTAAATGTACGACTAATAACGTCGTTCTGTTGTTCACGCGTCAGT 29216 |||| ||||| ||| | || ||||| | || || || ||||| ||||| |||||| Sbjct 254 ATTACATCGCGCTGTGGAAC-GTACGGTTGATCACATCAAGTTGTTGCTCACGAGTCAGT 196 Query 29217 GCATTAAATCGAACAGCATAGCCAGAGACACGAATGGTCAACTGAGGGTATTTTTCAGGA 29276 | |||| ||||||||| || || |||||||||||||| || || || ||||| || Sbjct 195 TTAATAAAGTTAACAGCATAACCGGATACACGAATGGTCAATTGTGGATAGTTTTCTGGG 136 Query 29277 TGTTTCTGTGCATCCAAAAGCTGATCACGACTTAACACATTGACATTTAGGTGCTG 29332 || | | ||||||| ||| || |||||| ||||| || ||||| || || || Sbjct 135 TGCTCCATCGCATCCATAAGTTGTTCACGATCAAACACGTTCACATTCAGATGATG 80 >seq36301 Length=2078 Score = 95.1 bits (104), Expect = 9e-15 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 59845 TTGTTAGTGGTGCAGGTTTGAGTGTAGATAGTGGTGTTCGTGCTTTCCGTACTGATACTG 59904 |||| | |||||||| | |||||||| |||||| |||||||||||||||| || || Sbjct 1516 TTGTAACAGGTGCAGGACTTAGTGTAGAAAGTGGTATTCGTGCTTTCCGTACCGACACAC 1575 Query 59905 CTAGTGGTAAAGCGTTGTGGGATGATTATGACCTAGAAGAGGTATGTAATATTCATGCCT 59964 ||| ||||| |||||||||| |||||| | ||||| || |||||| | ||| | | Sbjct 1576 AATCTGGAAAAGCTATGTGGGATGAATATGACATTGAAGAAGTCTGTAATCTCCATTCTT 1635 Query 59965 TT 59966 || Sbjct 1636 TT 1637 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355731788276900