Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_011056.1 Length=75811 Score E Sequences producing significant alignments: (Bits) Value seq1964 345 2e-90 seq16950 266 2e-66 seq48508 131 8e-26 seq79350 116 2e-21 seq45708 111 8e-20 seq63152 109 3e-19 seq68975 100 1e-16 >seq1964 Length=6164 Score = 345 bits (382), Expect = 2e-90 Identities = 573/827 (69%), Gaps = 3/827 (0%) Strand=Plus/Plus Query 65913 ATTCCCACCGGCTCGATAGCTCTGGACGCCGCTCTCGGCATCGGGGGGTATCCGAGGGGC 65972 ||| |||||||||| | | ||| ||| ||| ||||||||||| || || | |||| Sbjct 4323 ATTTCCACCGGCTCCCTGGGTCTCGACATCGCCCTCGGCATCGGCGGTCTGCCCAAGGGC 4382 Query 65973 CGGGTAGTGGAGATCTACGGTCCTGAGTCTTCAGGGAAGTCAACGTTGTGCCTCCACGCG 66032 || | || || ||||||||||| ||||| || || ||| | || || ||| | Sbjct 4383 CGTATCGTCGAAATCTACGGTCCCGAGTCCTCGGGCAAGACCACCCTGACCCTGTCGGTC 4442 Query 66033 GTGGCCAATGCCCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCCGAACATTCTCTC 66092 | ||| | ||||||||| || | || | ||||| | |||||||||| || | || Sbjct 4443 ATCGCCCAGGCCCAGAAGCAGGGCGCCACCTGCGCCTTCGTCGACGCCGAGCACGCGCTG 4502 Query 66093 GACCCTGAGTACGCCGCGGCGCTCGGGGTGGATGTCGACAATCTCGTGGTTGTGCAGCCA 66152 ||||| || || |||| ||| || || | |||||| | || |||| ||||| Sbjct 4503 GACCCGGACTATGCCGGCAAGCTGGGCGTCAACGTCGACGACCTGCTGGTGTCCCAGCCG 4562 Query 66153 GACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTTCTCGTCAAGTCTGGCGAGGTTTCC 66212 || || ||||| ||||||||||| ||| ||| | || || || || ||| | Sbjct 4563 GATACCGGCGAACAGGCCCTGGAAATCACCGACATGCTGGTGCGCTCCAACGCGGTCGAC 4622 Query 66213 ATCATCGTTGTGGACTCTGTGGCGGCCCTGGTGCCGCGGGCGGAGCTCGAAGGGGACATC 66272 ||||| | || ||||| ||||| ||||||||||| ||| ||| ||||||| || || Sbjct 4623 GTCATCATCGTCGACTCCGTGGCCGCCCTGGTGCCCAAGGCCGAGATCGAAGGCGAGATG 4682 Query 66273 GGGGACTCGCACGTCGGCCTGCATGCCCGCCTGATGTCTCAGGCCATGCGCAAGCTGACC 66332 || ||| |||||| || ||||| || || |||||||| ||||| |||||||| | ||| Sbjct 4683 GGTGACATGCACGTGGGTCTGCAGGCGCGTCTGATGTCCCAGGCGCTGCGCAAGATCACC 4742 Query 66333 GGCACGATTGCCAGCACCAACACGCTCACCCTGTGGGTGAATCAGCTGCGCGAGAAGATC 66392 |||| || | | ||||| || | | | | || ||| | ||| ||||||| Sbjct 4743 GGCAACATCAAGAACGCCAACTGCCTGGTCATCTTCATCAACCAGATCCGCATGAAGATC 4802 Query 66393 GGCAACGTGGGCTACGGCCCGAATGAGACCACCACCGGTGGTAAGGCTCTGCGCTTCTAC 66452 || ||| | |||| |||||||||||||| ||||| || ||| |||||| Sbjct 4803 GG---TGTGATGTTCGGCAACCCCGAGACCACCACCGGCGGTAACGCCCTGAAGTTCTAC 4859 Query 66453 GCCTCGGTGCGTATGGATGTCCGCAGGATCGCCACCGAGAAGGAAGGCGATGAGGCTGTC 66512 ||||||| ||| | || ||||| | |||| | | | |||||||||||| |||| || Sbjct 4860 TCCTCGGTCCGTCTCGACATCCGCCGCATCGGCGCGGTGAAGGAAGGCGACGAGGTGATC 4919 Query 66513 GGCAACCGCACGCGCGTGAAGGTTGTCAAGAACAAGCTGGCGCCTCCGCACCGCCAGGCT 66572 || | | || ||||| ||||| |||||||||||| |||| || ||| ||||||||| Sbjct 4920 GGTAGCGAAACCCGCGTCAAGGTGGTCAAGAACAAGGTGGCACCGCCGTTCCGCCAGGCC 4979 Query 66573 GAGTTTTCCATCGTCTACGGCGAGGGCATTTCCCGCGAGGCTGAACTCCTCGACATGGCC 66632 ||||| ||| |||||||| |||| || | | | | || || |||| ||| | Sbjct 4980 GAGTTCCAGATCCTCTACGGCAAGGGTATCTATCTGAACGGCGAGATCATCGATCTGGGC 5039 Query 66633 GTTTCCCGAGGGCTCATCAAGAAGTCTGGGGCCTGGTTCAAGTACGGGGACAAGAACATC 66692 || | || || ||| ||||||| || ||||||| || ||| || || || ||| Sbjct 5040 GTGCAACTGGGTCTGATCGAGAAGTCGGGCGCCTGGTACAGCTACCAGGGCAGCAAGATC 5099 Query 66693 GGCCAGGGCAAGCCCAAGACCGTGCAGTGGCTGAAGGACAACCCGGA 66739 |||||||||||| ||| ||| ||| ||| | |||||||| || Sbjct 5100 GGCCAGGGCAAGGGCAACGCCGCCAAGTTCCTGGAAGACAACCCCGA 5146 >seq16950 Length=685 Score = 266 bits (294), Expect = 2e-66 Identities = 426/605 (70%), Gaps = 9/605 (1%) Strand=Plus/Minus Query 65994 CCTGAGTCTTCAGGGAAGTCAACGTTGTGCCTCCACGCGGTGGCCAATGCCCAGAAGGCC 66053 || ||||| || || ||| | ||| || || |||||| | |||||||| ||| ||| Sbjct 684 CCCGAGTCCTCGGGTAAGACGACGCTGACGCTGCACGCGATCGCCAATGCGCAGCGCGCC 625 Query 66054 GGTGGCAACGCCGCCTACATCGACGCCGAACATTCTCTCGACCCTGAGTACGCCGCGGCG 66113 || || | |||||| | |||||||||||| || | || || || || |||||| | | Sbjct 624 GGAGGAATCGCCGCGTTCATCGACGCCGAGCACGCGCTGGATCCCGAATACGCCAAGAAG 565 Query 66114 CTCGGGGTGGATGTCGACAATCTCGTGGTTGTGCAGCCAGACACTGGCGAGCAGGCCCTG 66173 |||||||| | ||||| ||| | || |||||| ||||| || ||||||||||| Sbjct 564 CTCGGGGTCGGCATCGACGCCCTC-TCGTGTCGCAGCCCGACACGGGTGAGCAGGCCCTC 506 Query 66174 GAGATCGTTGACCTTCTCGTCAAGTCTGGCGAGGTTTCCATCATCGTTGTGGACTCTGTG 66233 ||||||| ||| | || || || || | | | | || |||| | ||||| || Sbjct 505 GAGATCGCCGACATGCTGATCCGCTCGGGTGCGATCGACCTCGTCGTCATCGACTCGGTC 446 Query 66234 GCGGCCCTGGTGCCGCGGGCGGAGCTCGAAGGGGACATCGGGGACTCGCACGTCGGCCTG 66293 || ||||| ||||| ||| ||| || | || || || || |||||||||||||| || Sbjct 445 GCCGCCCTCGTGCCCGAGGCCGAGATCAAGGGTGAGATGGGCGACTCGCACGTCGG--TG 388 Query 66294 CATGCCCGCCTGATGTCTCAGGCCATGCGCAAGCTGACCGGCACGATTGCCAGCACCAAC 66353 || |||||||| ||| ||||| |||||||||| ||||||| || || ||||| Sbjct 387 CAGGCCCGCCTCATGAGCCAGGCGCTGCGCAAGCTCACCGGCAACATCAAGCGCTCCAAC 328 Query 66354 ACGCTCACCCTGTGGGTGAATCAGCTGCGCGAGAAGATCGGCAACGTGGGCTACGGCCCG 66413 || || | | | || ||||| ||||||||||||||| | || | |||| || Sbjct 327 ACCCTGGTGATCTTCATCAACCAGCTCCGCGAGAAGATCGGCGTCATG---TTCGGCTCG 271 Query 66414 AATGAGACCACCACCGGTGGTAAGGCTCTGCGCTTCTACGCCTCGGTGCGTATGGATGTC 66473 |||||||| |||||||| ||||| ||| ||||||||||| || || | || || Sbjct 270 CCGGAGACCACGACCGGTGGCAAGGCGCTGAAGTTCTACGCCTCCGTCCGCCTCGACATC 211 Query 66474 CGCAGGATCGCCACCGA-GAAGGAAGGCGATGAGGCTGTCGGCAACCGCACGCGCGTGAA 66532 ||| | | || | || ||||| |||| || ||| ||||| || |||||||| Sbjct 210 CGCCGAACCG-GGCAGATCAAGGATCGCGACGACATCGTC-GCAACGCGACCCGCGTGAA 153 Query 66533 GGTTGTCAAGAACAAGCTGGCGCCTCCGCACCGCCAGGCTGAGTTTTCCATCGTCTACGG 66592 ||| || ||||||||| | ||||| ||| | |||| ||||| |||| | ||||| Sbjct 152 GGTGGTGAAGAACAAGGTCGCGCCGCCGTTCAAGCAGGTCGAGTTCGACATCATGTACGG 93 Query 66593 CGAGG 66597 ||||| Sbjct 92 CGAGG 88 >seq48508 Length=545 Score = 131 bits (144), Expect = 8e-26 Identities = 297/441 (67%), Gaps = 8/441 (2%) Strand=Plus/Minus Query 65888 CGCCAAGCCGCAGACTGTGGACACCATTCCCACCGGCTCGATAGCTCTGGACGCCGCTCT 65947 || |||| |||| || || ||||| | || |||||| | | || ||| ||| || Sbjct 437 CGACAAGGTGCAGGAGGTCGAGACCATCTCGACGGGCTCGCTCGGGCTCGACATCGCGCT 378 Query 65948 CGGCATCGGGGGGTATCCGAGGGGCCGGGTAGTGGAGATCTACGGTCCTGAGTCTTCAGG 66007 |||| |||| || || | |||||| || || ||||||||||| || || || || || Sbjct 377 CGGCGTCGGCGGCCTGCCCAAGGGCCGCGTCGTCGAGATCTACGGCCCGGAATCGTCGGG 318 Query 66008 GAAGTCAACGTTGTGCCTCCACGCGGTGGCCAATGCCCAGAAGGCCGGTGGCAACGCCGC 66067 ||| | ||| || |||||| | | ||| | ||||||||| || ||| | ||| Sbjct 317 CAAGACCACGCTGGCGCTCCACACCATCGCCGAGGCCCAGAAGAAGGGCGGCGTCTGCGC 258 Query 66068 CTACATCGACGCCGAACATTCTCTCGACCCTGAGTACGC-CGCGGCGCTCGGGGTGGATG 66126 || | |||| ||||| || | ||||| || | || || ||| ||| || || ||| Sbjct 257 CTTCGTCGATGCCGAGCACGCGCTCGATCCGGTCTATGCGCGC-AAGCTTGGCGTCGATC 199 Query 66127 TCGACAATCTCGTGGTTGTGCAGCCAGACACTGGCGAGCAGGCCCTGGAGATCGTTGACC 66186 | | || || || || |||||| || || ||||| ||||| ||||| ||| || Sbjct 198 TGCAGAACCTGCTGATTTCGCAGCCGGATACAGGCGAACAGGCGCTGGAAATCACCGATA 139 Query 66187 TTCTCGTCAAGTCTGGCGAGGTTTCCATCATCGTTGTGGACTCTGTGGCGGCCCTGGTGC 66246 || || || || | ||| | |||| || ||||| || ||||| || || Sbjct 138 CGCTGGTGCGCTCGGGTGCGGTCGATGTTCTCGTCGTTGACTCCGTTGCGGCGCTTACGC 79 Query 66247 CGCGGGCGGAGCTCGAAGGGGACATCGGGGAC---TCGCACGTCGGCCTGCATGCCCGCC 66303 |||| ||||| ||||||| || || || ||| | || || || ||||| || |||| Sbjct 78 CGCGTGCGGAAATCGAAGGCGAGATGGGCGACCAGTTGC-CG--GGTCTGCAGGCGCGCC 22 Query 66304 TGATGTCTCAGGCCATGCGCA 66324 ||||| ||||| |||||| Sbjct 21 TGATGAGCCAGGCGCTGCGCA 1 >seq79350 Length=217 Score = 116 bits (128), Expect = 2e-21 Identities = 123/161 (76%), Gaps = 1/161 (1%) Strand=Plus/Plus Query 66417 GAGACCACCACCGGTGGTAAGGCTCTGCGCTTCTACGCCTCGGTGCGTATGGATGTCCGC 66476 |||||||||||||||||||| || || |||||||||||||| ||| ||||| ||||| Sbjct 50 GAGACCACCACCGGTGGTAACGC-CTCAAGTTCTACGCCTCGGTACGTCTGGATATCCGC 108 Query 66477 AGGATCGCCACCGAGAAGGAAGGCGATGAGGCTGTCGGCAACCGCACGCGCGTGAAGGTT 66536 | | || | | |||||| ||||| || | || |||| | || ||||| ||||| Sbjct 109 CGCACCGGTGCGGTGAAGGACGGCGAGGAAGTGGTGGGCAGCGAGACCCGCGTCAAGGTA 168 Query 66537 GTCAAGAACAAGCTGGCGCCTCCGCACCGCCAGGCTGAGTT 66577 || ||||||||| |||| || ||| ||| ||||| ||||| Sbjct 169 GTGAAGAACAAGGTGGCACCGCCGTTCCGTCAGGCCGAGTT 209 >seq45708 Length=735 Score = 111 bits (122), Expect = 8e-20 Identities = 423/648 (65%), Gaps = 22/648 (3%) Strand=Plus/Plus Query 65921 CGGCTCGATAGCTCTGGACGCCGCTCTCGGCATCGGGGGGTAT-CCGAGGGGCCGGGTAG 65979 ||| || || || |||| |||||| || | | || ||||| || || || || | | Sbjct 42 CGGTTCTATCGCATTGGATATCGCTCTGGGAA-CAGGCGGTATGCCAAGAGGTCGTATCG 100 Query 65980 TGGAGATCTACGGTCCTGAGTCTTCAGGGAAGTCAACGTTGTGCCTCCACGCGGTGGCCA 66039 | || || || || ||||| |||||||| || | || | || |||||| | || Sbjct 101 TTGAAATATATGGCCCTGAATCTTCAGGTAAAACGACAGTAGCTCTGCACGCGATTGCAG 160 Query 66040 ATGCCCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCCGAACATTCTCTCGACCCTG 66099 | | || || || || || | || || | ||||| || ||||| | | |||||| Sbjct 161 AGGTTCAAAAAGCGGGCGGACAAGCAGCATTTATCGATGCTGAACACGCATTGGACCCTC 220 Query 66100 AGTACGCCGCGGCGCTCGGGGTGGATGTCGACAATCTCGTGGTTGTGC-AGCCAGACACT 66158 | || || || || || | |||| | || || |||| | | || ||||| Sbjct 221 AATATGCGAAAAACCTGGGTGTTAACATCGATGAGCTGCTG-TTGTCCCAACCGGACACA 279 Query 66159 GGCGAGCAGGCCCTGGAGATCGTTGACCTTCTCGTCAAGTC-TGGCGAGGTTTCCATCAT 66217 || ||||| | |||| |||| ||| ||||| | || ||| | |||| ||||| Sbjct 280 GGTGAGCAAGGTTTGGAAATCGCTGAAGCACTCGT-ACGTAGTGGTGCGGTTGATATCAT 338 Query 66218 CGTTGTGGACTCTGTGGCGGCCCT-GGTGCCGCGGGCGGAGCTCGAAGGGGACATCGGGG 66276 |||| | ||||| || || || || |||||| | |||| ||||||| || || || | Sbjct 339 CGTTATCGACTCCGTAGCAGCACTCGGTGCCAAAG-CGGAAATCGAAGGCGAGATGGGTG 397 Query 66277 ACTCGCACGTCGGCCTGCATGCCCGCCTGATGTCTCAGGCCATGCGCAAGCTGACCGGCA 66336 |||| ||||| || ||||| || || |||||||||||||| |||| ||||| |||| Sbjct 398 ACTCTCACGTAGGTCTGCAAGCACGTCTGATGTCTCAGGCGCTGCGTAAGCTTTCCGGTG 457 Query 66337 CGATTGCCAGCA---CCAACACGCTCACCCTGTGGGTGAATCAGCTGCGCGAGAAGATCG 66393 |||| ||||| |||| || |||| | | | || ||||| || || || | | Sbjct 458 CGAT---CAGCAAATCCAA-ACAATCACAATCTTCATCAACCAGCTTCGTGAAAAAGTTG 513 Query 66394 GC--AACGTGGGCTACGGCCCGAATGAGACCACCACCGGTGGTAAGGCTCTGCGCTTCTA 66451 || | || | || ||| ||| ||||| | |||||| || || ||||| Sbjct 514 GCGTTATGTTCGGTA--ACCC---TGAAACCACACCAGGTGGTCGTGCATTGAAGTTCTA 568 Query 66452 CGCCTCGGTGCGTATGGATGTCCGCAGGATCGCCACCGAGAAGGAAGGCGATGAGGCTGT 66511 | | | || ||| ||||||| ||| | || | | ||| | || | || | || Sbjct 569 CTCGACTGTTCGTCTGGATGTTCGCCGTATTGAAGCTATTAAGAACGGTAACGATGTGGT 628 Query 66512 CGGCAACCGCACGCGCGTGAAGGTTGTCAAGAACAAGCTGGCGCCTCC 66559 || ||||| || || || || ||||| || ||||| | || ||||| Sbjct 629 TGGTAACCGTACACGTGTTAAAGTTGTTAAAAACAAAGTTGCTCCTCC 676 >seq63152 Length=360 Score = 109 bits (120), Expect = 3e-19 Identities = 228/334 (68%), Gaps = 17/334 (5%) Strand=Plus/Minus Query 66146 GCAGCCAGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTTCTCGTCAAGTCTGGCGA 66205 |||||| ||||| ||||||||||| ||||| |||| ||| | || || || ||| Sbjct 329 GCAGCCGGACACCGGCGAGCAGGCGCTGGAAATCGCCGACATGCTGGTGCGCTCGGGCTC 270 Query 66206 GGTTTCCATCATCGTTGTGGACTCTGTGGCGGCCCTGGTGCCGCGGGCGGAGCTCG-AAG 66264 ||| |||| | || || ||||| || || || ||| ||| ||| || ||| ||| Sbjct 269 GGTGGACATCGTGGTGGTCGACTCGGTCGCCGCGCTGACCCCG-AGGCCGAAATCGAAAG 211 Query 66265 GGGACATCGGGGAC---TCGCACGTCGGCCTGCATGCCCGCCTGATGTCTCAGGCCATGC 66321 | || || || ||| | || || || ||||| || ||||||||| ||||| ||| Sbjct 210 GCGAGATGGGCGACCAGTTGC-CG--GGTCTGCAGGCGCGCCTGATGAGCCAGGCGCTGC 154 Query 66322 GCAAGCTGACCGGCACGATTGCCAGCACCAACACGCTCACCCTGTGGGTGAATCAGCTGC 66381 ||||||| ||||||| || || ||||||| || | | | || ||| ||| Sbjct 153 GCAAGCTCACCGGCAACATCAAGCGCTCCAACACCCTGGTGATCTTCATCAACCAGTTGC 94 Query 66382 GCGAGAAGATCGGC------AACGTGGGCTACGGCCCGAATGAGACCACCACCGGTGGTA 66435 || |||||||||| | |||| | ||||| || ||||||||||| || | Sbjct 93 GCATGAAGATCGGCGTGATGATGCCGGGCCAGAGCCCG---GAAACCACCACCGGCGGCA 37 Query 66436 AGGCTCTGCGCTTCTACGCCTCGGTGCGTATGGA 66469 | || ||| ||||| ||||||||||| |||| Sbjct 36 ACGCGCTGAAGTTCTATGCCTCGGTGCGCCTGGA 3 >seq68975 Length=317 Score = 100 bits (110), Expect = 1e-16 Identities = 175/255 (69%), Gaps = 0/255 (0%) Strand=Plus/Plus Query 65913 ATTCCCACCGGCTCGATAGCTCTGGACGCCGCTCTCGGCATCGGGGGGTATCCGAGGGGC 65972 ||| |||||||||| | | ||| ||| ||| ||||||||||| || || | |||| Sbjct 63 ATTTCCACCGGCTCCCTGGGTCTCGACATCGCCCTCGGCATCGGCGGTCTGCCCAAGGGC 122 Query 65973 CGGGTAGTGGAGATCTACGGTCCTGAGTCTTCAGGGAAGTCAACGTTGTGCCTCCACGCG 66032 || | || || ||||||||||| ||||| || || ||| | || || ||| | Sbjct 123 CGTATCGTCGAAATCTACGGTCCCGAGTCCTCGGGCAAGACCACCCTGACCCTGTCGGTC 182 Query 66033 GTGGCCAATGCCCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCCGAACATTCTCTC 66092 | ||| | ||||||||| || | || | ||||| | |||||||||| || | || Sbjct 183 ATCGCCCAGGCCCAGAAGCAGGGCGCCACCTGCGCCTTCGTCGACGCCGAGCACGCGCTG 242 Query 66093 GACCCTGAGTACGCCGCGGCGCTCGGGGTGGATGTCGACAATCTCGTGGTTGTGCAGCCA 66152 ||||| || || |||| ||| || || | |||||| | || |||| ||||| Sbjct 243 GACCCGGACTATGCCGGCAAGCTGGGCGTCAACGTCGACGACCTGCTGGTGTCCCAGCCG 302 Query 66153 GACACTGGCGAGCAG 66167 || || ||||| ||| Sbjct 303 GATACCGGCGAACAG 317 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 242085349427600