Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_011142.1 Length=47453 Score E Sequences producing significant alignments: (Bits) Value seq37493 352 9e-93 seq38768 237 5e-58 seq69233 161 3e-35 seq35541 96.9 1e-15 seq43594 84.2 7e-12 >seq37493 Length=8410 Score = 352 bits (390), Expect = 9e-93 Identities = 660/965 (68%), Gaps = 16/965 (2%) Strand=Plus/Plus Query 8828 TGACGGCCTGATTAACGTCGCCAGCGGACTGGGAACTGAAAAGGCTAAGCGATCGCACAA 8887 |||||| ||| ||||||| ||| ||| || || |||| |||||||| || || ||||| Sbjct 1960 TGACGGACTGGTTAACGTTGCCTCCGGCCTTGGTACTGCGAAGGCTAAACGTTCACACAA 2019 Query 8888 TAGCTGGCAGTTCCCTATCCTTAACTCGT------TTGCAG-AGCTTGACGCCTGCTACA 8940 | || || |||| | |||| | | ||| | || || || ||| | Sbjct 2020 TTTCT-----TTAGCTATGCG--ACTCTTCAAGATTGGCAACAACTCGATGCGGCCTATA 2072 Query 8941 TGAGCAACTGGCTGGCCCGGCAGATTGTCGAGATTCCCGCCGAGGACATGACGCGGGAGT 9000 | |||||||| || || || || || || || || ||||| ||| || |||| Sbjct 2073 GTACGAACTGGCTTGCACGCGCCATCGTGGATATCCCTGCTGAGGATATGTGCCGTGAGT 2132 Query 9001 GGCGCGAGTTTAAGTGTAAAGACGCTGA-GCTGCTGCAAAAAGAGGAAGACCGGGTAAGC 9059 ||||| | || | |||||||| || ||| | | | || |||||||| | | Sbjct 2133 GGCGCATCATCAAATCCAAAGACGCAGATGCTA-TCCGTATCGAAGAAGACCGTCTCATG 2191 Query 9060 GTGGCTGTTGCAGTGCAAGAGGCTATTGCATGGGCGCGTCTATACGGCGGCGCTGGTATC 9119 || || | || || || ||||| | | |||| || ||||| || | ||||| Sbjct 2192 CTGCCTATGGCGGTTCAGGAGGCCACAACGTGGGGCAACCTGTACGGGGGTGGCGGTATT 2251 Query 9120 CTCATGCTAACCGGCCAGCCGCTCGATAAGCCGTTGGTGCTTTCCAGGGTGAAGAAAGGC 9179 |||||||| ||||| ||| || | |||||||| || | | | || || Sbjct 2252 CTCATGCTCACCGGACAGGACCTGCAGAAGCCGTTAAACGTTAACCGCATCCGTAAGGGT 2311 Query 9180 GATCTTAAGCGCCTGATCGTTTTCGACCGCTGGGATATGGCTGCGATGACAATCAACACT 9239 ||| | | ||||| | || || ||||||| || ||| |||| |||||| | ||||| Sbjct 2312 GATTTACAACGCCTCGTGGTGTTTGACCGCTACGACATGTCTGCCATGACACTTAACACG 2371 Query 9240 TGGAACGTCATTGCAGACAACTACCTAAAGCCTGAGTTTTACAACATTCGAGGCGGGAAT 9299 |||||||| | ||| ||||| || || |||||||||| || || || Sbjct 2372 TGGAACGTACTGGCACCGAACTATCTTGCCCCAGAGTTTTACACTATCACCGGTGGCGGA 2431 Query 9300 CAGCAGATTCATTGGAGCCACTTTGCCCGCTTCAATGGCGCACGGCTACCGCGCCGTCAG 9359 ||||||||||| ||| ||| ||||| ||||| || ||| | || || || ||||| ||| Sbjct 2432 CAGCAGATTCACTGGTCCCATTTTGCGCGCTTTAACGGCACCCGCCTCCCCCGCCGCCAG 2491 Query 9360 ATGGCTATTACTCAGGGCTGGGGCGACTCTGAGCTGCGCAAGTGCCTTGATGATATTGGC 9419 ||| |||||||||||||||||||| || |||| ||||| || ||||| || Sbjct 2492 ATGTTACAGACTCAGGGCTGGGGCGACTCAGAATTGCGTAAGTGTCTCGATGACATCATG 2551 Query 9420 GACATGGTGGCGTCAAAGGATGGTATTGCCGAGCTGATGCAAGAGGCTAACGTCGATGTG 9479 |||||||| ||||| ||||| ||||||||||| |||||||| || || ||||| || | Sbjct 2552 GACATGGTTGCGTCGAAGGACGGTATTGCCGAACTGATGCAGGAAGCCAACGTGGACATC 2611 Query 9480 ATCACCAGGGAAGGATTGGCAGATGAACTGGCCAGTGACCAGGACGGGCCGATCATTGAT 9539 |||| | ||||| || ||||| || || | |||||||||| | |||| | Sbjct 2612 ATCAAGCGTGAAGGTCTGAGTGATGAGCTTGCAACAGACCAGGACGCCGCTATCACAGCC 2671 Query 9540 CGATACGCAACTTTCAGCAAGATGAAAAGCGTTGTGCAGTTGGCCCTACTGGACGGCGAT 9599 || ||||| |||||| ||||||| || |||||| ||||||| ||||||||||| Sbjct 2672 CGTTACGCCCTGTTCAGCCAGATGAAGTCTGTGGTGCAGATGGCCCTGCTGGACGGCGAC 2731 Query 9600 GAGACCTACGACCGCAAGACTCTTAATCTATCCGGTGTCGCGCCTATCCTTGACACATTC 9659 ||||| |||||||||||||| || || | |||||| ||||| | |||| ||| Sbjct 2732 GAGACATACGACCGCAAGACGCTGGATTTGGGCGGTGTTGCGCCGGTTATTGAACTGTTC 2791 Query 9660 ATGACTTGGATTAGTGGTGCGGCGGACATCCCGGTTACTCGATTGTTCGGCACCAGTGCT 9719 ||||| |||||||| ||||| || |||| || |||| || ||||||| || ||| Sbjct 2792 ATGACGTGGATTAGCGGTGCAGCTAACATTCCCCTTACCCGCCTGTTCGGTACGTCTGCC 2851 Query 9720 AAGGGATTGAATGCTACAGGCGACGGCGATCAGAATAATTATTACGATAGCATCAGGTCT 9779 || ||| | ||||| || || || || || | ||| || || | | | |||| | || Sbjct 2852 AAAGGACTCAATGCCACGGGTGAAGGTGACCTGAAGAACTACTTCAACTCCATCCGCTCG 2911 Query 9780 AAGCA 9784 ||||| Sbjct 2912 AAGCA 2916 >seq38768 Length=1707 Score = 237 bits (262), Expect = 5e-58 Identities = 659/986 (67%), Gaps = 35/986 (4%) Strand=Plus/Plus Query 27156 GTTAATTACTCTGCTGCAAAATCCACCATTACCCTGGAAGGCAAAAAGCTTTCCGGAGTA 27215 || || ||||| |||| || || ||||||||| ||| |||||| | | || || Sbjct 23 GTGAACTACTCAGCTGACAACTCTACCATTACCGGTGAATTTAAAAAGTCTCCGGGTGTT 82 Query 27216 ACGGCGGAAGATTTGACAGATACAGCATATGCCGCAATGACGAA-GCCAACaaaaaaaTG 27274 |||| ||||| || ||||||| || || | |||| | |||| ||||| | Sbjct 83 GCGGCTGAAGACCTGTCAGATACTGCGTACAGTACCATGAAGCGCGCCACCAAAAGGCAG 142 Query 27275 TGGCTTCTATACCATTGTCGATTTGCAAGGATCTGTTGATAACGGTCGGTTTATTAATTC 27334 |||||| | | | | ||| |||| || || |||| |||||| | | || | Sbjct 143 C--CTTCTACAGCGTGCTGGATCTGCAGGGTTCAACCGATAGCGGTCGCTGGCTGAACAC 200 Query 27335 GTGGACGCATAGCAGCTACGGGGAATACATTGATGATGTTGTCAATCTCTCCGCTTTTGT 27394 || || || |||||| || ||||||||||| || ||||| || ||| ||| | Sbjct 201 CATCACACACTCCACCTACGGCGAGTACATTGATGACGTGGTCAACCTTGACGCGTTTAT 260 Query 27395 TAATTACCTGAAAGTGTCG--CTATATAACGCAATTGAAAATCAAACGACAAAGTTAGGT 27452 || | |||| |||| | || || |||||| | | || || ||||| ||| | | Sbjct 261 CAACTTCCTG--CGTGTAGGCCTGTACAACGCACTGGCGAACCAGACGACCAAGCT--GC 316 Query 27453 CA-AGAC-CCTATCGGCCAGTCTGTTCTGATCGGCGCAGC-CCGTGCAGTGTGTGAGCAG 27509 || |||| ||| | || ||| | |||||||| || ||||| | || |||||||||||| Sbjct 317 CACAGACACCTGTAGGTCAGGCGGTTCTGATTGGTGCAGCGAAGCGC-GTGTGTGAGCAG 375 Query 27510 TTTGTGCGAAATGATTACTTAGGCCCGCGTAATTACACCGATCCTGATGACGGCGTTTAC 27569 || ||||| || | || | || ||||| || || | ||| || ||| ||| | || Sbjct 376 TTCGTGCGTAACAACTATCTCGGACCGCGCAACTATATCGACCCGGATACCGGTCTGGAC 435 Query 27570 AAATATACTGCAGGCTACGAGATCCTTACCAAGCCAGAAGAAATTCTGAATCTGCTTGAT 27629 || || ||||| || || || |||||||| ||||| |||||| | ||| ||| Sbjct 436 GCTTACACAATTGGCTATGAAATTCTGACCAAGCCGGAAGATATTCTGGACCTGTCAGAT 495 Query 27630 GCTGATCGCGCAGCACGTAAAGCAGCCCCGTTGCGTATTCGTATTTTCCGCAAAGGCGCT 27689 ||||| || || |||||| || || || | || | || | |||||| || || Sbjct 496 GCTGACCGTGCTGCACGTCTGGCTGCGCCAATCCGCGTGCGCGTGTTCCGCTCTGGTGCA 555 Query 27690 ATTCATCAAGTCGCTGTTGATGTGA----ACGTTTACTAAGA--GGTTTTAAAAAATGGC 27743 |||||| | | | || || ||| | ||||||| ||| | || || ||| ||| | Sbjct 556 ATTCAT--ATTTG-TGATG-TGTCAGTTGACGTTTATTAATACGGGGATTTAAATATGTC 611 Query 27744 ACTGAATAATTTTTCTAC--GGACCTCTTTGTTGTCGTGGTTAACGGCAGGACGAT-CAG 27800 |||| | || ||| ||| | ||| ||||| | | ||||||| | | || ||| Sbjct 612 ACTGCAAAACTTTAGTACATCAAACTCCGTGTTGAC--GATTAACGGTCGTATAATGCAG 669 Query 27801 CGATTGGGGCGATACTGCAACACCGTTTACCGATGATCCAATTGATCCTAAAGTAACTCT 27860 |||| || || || || ||||| | || ||||| |||||||| || | | | | Sbjct 670 -GATTTTGGTGAGACAGCTACACCTTACACAGATGAACCAATTGA-CCAGCGTTCAGTAT 727 Query 27861 T-CGTCGTGGACAAGGCGGAAATGCTGTTCGTTTGAATCGTATTAACCCCGGTCGCAACG 27919 | |||||||| || || || |||||| | || | | || ||||| || |||||| || Sbjct 728 TACGTCGTGGTCAGGGTGGTAATGCTCTACGACTTGACCGCATTAATCCGGGTCGCCGCG 787 Query 27920 TTAAGCTTTACTTAAACCCAGGTTCGCCAGACAGTGCGTACATGCAGGGGCTATTCAATA 27979 | | | |||| || |||||||| || || ||| ||| |||||||| || | || || | Sbjct 788 TGACGGTTTATTTTAACCCAGGCTCACCTGACTCTGCCTACATGCAAGGATTGTTTAACA 847 Query 27980 GCAATGCAAACATT--ACCCTGAGCAAGACGCAGATCGGAACCTTGGAAACAGCCATCGG 28037 ||||||| |||||| | || | ||| ||||| || || ||||| | || | || Sbjct 848 GCAATGCTAACATTGAAGCC--ACGTGGACTCAGATTGGTACTTTGGATGCTGCGGTAGG 905 Query 28038 CACAGAGGGCGTTATTGTCAACGATGCATCAAATGGCCGTGGCGGATCTACTATTACTGA 28097 |||| || || ||||||||||||| | || |||| || | || || | ||| Sbjct 906 TGCAGAAGGTGTGATTGTCAACGATGGTGCTCGCGGGCGTGTTGGTACCACCATCAGTGA 965 Query 28098 TGATCAGTACATTCTTGAATTCAATG 28123 ||| |||| ||| | || ||||||| Sbjct 966 TGACCAGTTCATCATGGAGTTCAATG 991 >seq69233 Length=1449 Score = 161 bits (178), Expect = 3e-35 Identities = 484/734 (66%), Gaps = 26/734 (4%) Strand=Plus/Minus Query 27414 CTATATAACGCAATTGAAAATCAAACGACAAAGTTAGGTCA-AGAC-CCTATCGGCCAGT 27471 || || |||||| | || || ||||| ||| | | || |||| ||| | || ||| Sbjct 1445 CTGTACAACGCACTGACGAACCAGACGACCAAGCT--GCCACAGACACCTGTAGGTCAGG 1388 Query 27472 CTGTTCTGATCGGCGCAGCCC-GTGCAGTGTGTGAGCAGTTTGTGCGAAATGATTACTTA 27530 | |||||||| || ||||| | || |||||||||||||| ||||| || | || | Sbjct 1387 CGGTTCTGATTGGTGCAGCGAAGCGC-GTGTGTGAGCAGTTCGTGCGTAACAACTATCTC 1329 Query 27531 GGCCCGCGTAATTACACCGATCCTGATGACGGCGTTTACAAATATACTGCAGGCTACGAG 27590 || ||||| || || | ||| || ||| ||| | || || || ||||| || Sbjct 1328 GGACCGCGCAACTATATCGACCCGGATACCGGTCTGGACGCTTACACAATTGGCTATGAA 1269 Query 27591 ATCCTTACCAAGCCAGAAGAAATTCTGAATCTGCTTGATGCTGATCGCGCAGCACGTAAA 27650 || || |||||||| ||||| |||||| | ||| |||||||| || || |||||| Sbjct 1268 ATTCTGACCAAGCCGGAAGATATTCTGGACCTGTCAGATGCTGACCGTGCTGCACGTCTG 1209 Query 27651 GCAGCCCCGTTGCGTATTCGTATTTTCCGCAAAGGCGCTATTCA------TCAAGTCGCT 27704 || || || | || | || | |||||| || || | || | | ||| | Sbjct 1208 GCTGCACCAATCCGCGTACGCGTGTTCCGCTCTGGTGCGGTGCATTTGTGTGATGTCTCA 1149 Query 27705 GTTGATGTGAACGTTTACTAAGAGGTTTTAAAAAATGGCACTGAATAATTTTTCTACGGA 27764 ||||| || | ||| || | || |||||| ||||| | |||||||| ||| | Sbjct 1148 GTTGACGTTTA---TTAATACGGGGATTTAAACGATGGCTTTAAATAATTTCAGTACCGT 1092 Query 27765 CCTCTTTGTTGTCGTGGTTAACGGCAGGA-CGATCAGCGATTGGGGCGATACTGCAACAC 27823 || || || ||| ||||| | | | |||| || |||||||| || ||||| | Sbjct 1091 AAACTCCGTAGTGACGGTCAACGGTCGTATCATTCAG-GACTGGGGCGAAACAGCAACCC 1033 Query 27824 CGTTTACCGATGATCCAATTGATCCTAAAGTAACTCTTCGTCGTGGACAAGGCGGAAATG 27883 ||| ||||| || ||||| || || || |||||||| || || || |||| Sbjct 1032 CGTACGTGGATGAACCGATTGACCCGCCTTCTACGCTGCGTCGTGGTCAGGGTGGTAATG 973 Query 27884 CTGTTCGTTTGAATCGTATTAACCCCGGTCGCAACGTTAAGCTTTACTTAAACCCAGGTT 27943 | || ||| || | ||||| ||||| |||||| ||| | || || | ||||| |||| Sbjct 972 CGGTGCGTCTGGACCGTATCAACCCGGGTCGCCGCGTGACACTGAACCTCAACCCCGGTT 913 Query 27944 CGCCAGACAGTGCGTACATGCAGGGGCTATTCAATAGCAATGCAAACATTACCCTGAGCA 28003 | | || || ||||||||||| || | || ||| ||| ||||| |||| Sbjct 912 CAGCCGATGCAGCTTACATGCAGGGTCTGATGAACAGCGGTGCCAACATCGAACTGACTT 853 Query 28004 AGACGCAGATCGGAACCTTGGAAACAGCCATCGGCACAGAGGGCGTTATTGTCAACGATG 28063 || ||||| || || |||| | || | || |||| || || ||||| ||||| | Sbjct 852 TCACACAGATTGGTACGCTGGATGCTGCAGTAGGTGCAGAAGGTGTGATTGTGAACGACG 793 Query 28064 CATCA-AATGGCCGTGGCGGATCTACTATTACTGATGATCAGTACATTCTTGA---ATTC 28119 ||| || |||| ||| |||| || | |||||| || ||| ||| |||| Sbjct 792 -GTCAGCGCGGTCGTGCCGGTACTACCATCAGTGATGA----CACGTTCGTGATGGATTC 738 Query 28120 AATGGCTGGACTGC 28133 |||| ||||| || Sbjct 737 AATGCGTGGACGGC 724 >seq35541 Length=3326 Score = 96.9 bits (106), Expect = 1e-15 Identities = 104/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 28522 AAGCTGTGTAGACTGGTTTCTAATGCGCCCATGTGTAGGGGTCGGCGGCGCTTGTCCTCC 28581 ||| |||||| |||||| || |||||||| ||| || | || |||||| || Sbjct 3252 AAGTTGTGTAAACTGGTACCTGATGCGCCCGTGTACCGGTATTAATGGTCTTTGTCCACC 3193 Query 28582 TCTCTGCACATGGGCACAACTTGAAGACGGCACTTACTCGCTTGCTGACGTTGAAATGTT 28641 | ||||||||||||||||| | |||||||||||||| || || || || |||||||| Sbjct 3192 ATTTTGCACATGGGCACAACTGAATGACGGCACTTACTCACTCGCAGATGTGGAAATGTT 3133 Query 28642 TAATCAAGCGTTAGACGA 28659 |||||| ||| | || || Sbjct 3132 TAATCAGGCGATGGATGA 3115 >seq43594 Length=2404 Score = 84.2 bits (92), Expect = 7e-12 Identities = 208/313 (66%), Gaps = 2/313 (1%) Strand=Plus/Plus Query 34413 AATGGCTGAAATTACGACA-ACTGGCTATAAACTCAAAACTCAGAACGAGTATTTTGAGG 34471 ||||||||||||||| ||| | ||| ||| ||| || || || || | ||| | | Sbjct 1815 AATGGCTGAAATTAC-ACAGAATGGTTATTTACTGAAGACAGTAAATGAATGGTTTAACG 1873 Query 34472 AAGAACGCGCCCGCTATTTAGCAATTGATCCGAAGTGGAATCTTGACCCGTCAACTCCTG 34531 |||| | | ||| | | || ||| || | |||||||| ||||| || ||||||| Sbjct 1874 AAGAGAAAGAACTTTATCTTGTCATAGATGCGGACTGGAATCTGGACCCTTCTACTCCTG 1933 Query 34532 ACGGTTTAAAGCTGGCGAGTGATGCAGAGATATGGGCCGGTTTGGATGAAATAGGACAAC 34591 ||||||| || | || ||| | || || | | | | | || |||| || | Sbjct 1934 ACGGTTTGAAAATTGCTCATGACTCGGAAATTTTTGGTGCTCTTGACGAAACTATTCAGC 1993 Query 34592 AGGCCTATAACTCAAAAGATCCAGCCAAGGCCAAGGGCTACGACCTTGATGTAATTGCCA 34651 |||| || ||||||||||| ||| ||| |||| || || |||||||| | ||| | Sbjct 1994 AGGCTTACAACTCAAAAGACCCAAACAAAGCCAGTGGGTATGACCTTGACATTATTTCTG 2053 Query 34652 ATATTACCGGAACGCGCCGCAGCCTTGGAACGCCTTCAACCGTAACGCTTACATTGTCTG 34711 ||||| ||||| || || | || ||| | ||| | ||||| || ||| ||| Sbjct 2054 CGATTACAGGAACTACACGAAGTCAGGGTACGGCATCATCGGTAACCGTTTTATTAACTG 2113 Query 34712 GCGTAGCTGGCAC 34724 | || || || || Sbjct 2114 GTGTGGCAGGTAC 2126 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151493229369000