Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq8712 210 2e-49 seq117378 84.2 2e-11 >seq8712 Length=1748 Score = 210 bits (232), Expect = 2e-49 Identities = 443/654 (68%), Gaps = 10/654 (2%) Strand=Plus/Minus Query 93715 AATTACGATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGC 93774 || ||| | ||||||| |||||| ||||||||| || || ||||||||| | | ||| Sbjct 766 AACTACCAGTACTTTGGCTTCAAGACTCTGGAGCGATCCTATCTCCTCAAGCTCAACGGC 707 Query 93775 AGGGTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCAC 93834 | | || ||||||||| || || || | ||||| || ||| |||| || || || Sbjct 706 AAGATTGTCGAGCGACCACAGCACATGATTATGCGTGTTGCCGTCGGTATCTGGGGAGAC 647 Query 93835 GACATGCCGAATGTTTTGCGGGCTTTCAGAGACATGCGGGACAAGAGGTATACCATGGCC 93894 || || | ||| || | | || |||| | ||| | ||| ||| Sbjct 646 AACCTGGAGCGTGTCCTGGAAACCTACAACCTCATGTCGAGCAAATTCTTCACCCACGCC 587 Query 93895 ACCCCGACCCTGTTCAACGCGGGGACCCCGG--TGCCACAGATGTCTTCGTGTTTCCTGA 93952 | || || || |||||||| || || || ||||| | |||| || || ||||| Sbjct 586 TCGCCCACACTATTCAACGCTGGTACGCCACAATGCCA--GCTGTCATCCTGCTTCCT-- 531 Query 93953 TGACGAAC-AAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGAC-TGTGCGAC 94010 || ||| |||| ||| |||| || || | |||| ||||| ||| || || | Sbjct 530 TGTCGACTGAAGGATGACAGCATCGAAGGCATCTATGACACCCTCA--GACGTGCGCCAT 473 Query 94011 CATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTC 94070 ||||| || || || || ||||| | | |||||| | | ||||||| || || Sbjct 472 GATCTCCAAGATGGCTGGCGGCATCGGCCTGAACGTCCACCGCATTCGTGCCACTGGCTC 413 Query 94071 CTACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAA 94130 ||||| ||| ||||| |||||||| |||||| |||| || ||||| || || ||||| Sbjct 412 GTACATTGCCGGCACCAACGGCACCTCAAACGGCGTCGTTCCCATGCTTCGCGTGTTCAA 353 Query 94131 CAACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTA 94190 |||| | || | ||||| ||||||||||| | | | ||| |||| | | || Sbjct 352 CAACACCGCCAGATACGTCGACCAGGGTGGCAACAAGCGACCTGGTGCTTTGCCCATTTA 293 Query 94191 TCTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAA 94250 || ||||| |||||||| |||||| | ||| ||||||||||||||||||||||||| Sbjct 292 CCTGGAGCCGTGGCACGCAGACGTGTTTGAGTTCCTCGACCTGCGAAAGAACCACGGCAA 233 Query 94251 CGATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAA 94310 || | | ||| | ||||||||| ||||| ||| | || || | || ||||| Sbjct 232 GGAGGAAGTTCGTGCCCGTGACCTCTTCCTTGCTCTATGGATTCCCGATTTGTTCATGAA 173 Query 94311 ACGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGG 94364 || || || || ||| || ||||| ||| | || ||||| ||||| || || Sbjct 172 GCGTGTTGAAAAGAACGGCGACTGGACTCTCATGTGCCCCAACGAATGCCCTGG 119 >seq117378 Length=621 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/188 (71%), Gaps = 2/188 (1%) Strand=Plus/Minus Query 94994 AGGGCATTTTTCAGTTCGACCTCTGGGGTGTGAAGCCCTCGGGTCTGTACGACTGGGAAG 95053 |||| ||| | ||||||||| | ||| ||| ||||| || | | ||| || ||||| Sbjct 194 AGGGTATTCTCCAGTTCGACATGTGGAATGTTAAGCCTTCCGATTTGTGGGAGTGGGATA 135 Query 95054 CTCTACGCGCTGATGTTATCAAACACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGC 95113 |||| | || || | | | ||||| | ||| | |||| | ||||| |||| Sbjct 134 CTCTCAGAGCGGAGATCAGGGAGCACGGCATTCGCAACTCTTTGCTGCTCGCCCC-ATGC 76 Query 95114 CCACGGCCTCCACGGCGCAGATCCTTGGCAACAACGAGTCGTTCGAACCCTTCACCTCCA 95173 |||| ||||| || | ||||| || ||||||||||||| ||||| |||| ||| |||| Sbjct 75 CCACTGCCTCGACT-CACAGATTCTGGGCAACAACGAGTGCTTCGAGCCCTACACATCCA 17 Query 95174 ACGTGTAC 95181 || | ||| Sbjct 16 ACATTTAC 9 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 493917419588000