Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_011273.1 Length=164602 Score E Sequences producing significant alignments: (Bits) Value seq63601 251 7e-62 seq56393 206 3e-48 seq56368 196 5e-45 seq22478 196 5e-45 seq38326 172 6e-38 seq51529 140 3e-28 seq27287 100 3e-16 seq14835 89.7 5e-13 seq34909 86.0 7e-12 >seq63601 Length=743 Score = 251 bits (278), Expect = 7e-62 Identities = 244/308 (79%), Gaps = 8/308 (3%) Strand=Plus/Minus Query 152885 CATCTTCGAGAGATTCACCGACCGCGCCCGTCGCGTCTGCGTCCTCGCCCAAGAGGAAGC 152944 ||| |||||||| ||||||||||||||||| || ||| |||||| |||||||| || || Sbjct 574 CATGTTCGAGAGGTTCACCGACCGCGCCCGACGGGTCGTCGTCCTGGCCCAAGAAGAGGC 515 Query 152945 GCGCATGCTCAACCATGCGTACATCGGCACCGAGCATCTGCTGCTCGGGCTGGTCCACGA 153004 || ||||||||||| |||||||| |||||||| | |||||||| ||| ||||||| Sbjct 514 CCGGATGCTCAACCACAACTACATCGGGACCGAGCACATCCTGCTCGGCCTGATCCACGA 455 Query 153005 GGGCGAGGGCGTAGCCGCCAAGGCGCTGCAGGCGCTCGACATCAACCTGGAGGAGGTGCG 153064 || ||| ||||| ||||||||||| || || |||| | |||| |||||| | || || Sbjct 454 GGTCGAAGGCGTCGCCGCCAAGGCCCTCGAGTCGCTGGGCATCTCCCTGGACGCCGTCCG 395 Query 153065 TGCCGAGGTCGAGGAGATCATCGGCCA--CGGCCAG-CAGGCACCCACCGG---GCACAT 153118 | ||||| |||||||||||||||| |||||| ||||| || |||| | ||| Sbjct 394 CGAGCAGGTCCAGGAGATCATCGGCCAGGGGGCCAGCCAGGCCCCGTCCGGCTCACCCAT 335 Query 153119 CCCGTTCACCGACCGCTCCAA-GCGCGTCCTGGAGCTGTCGCTGCGCGAGGCGCTGCAGC 153177 ||| |||||| |||| |||| | ||||| ||||||||||||||||| |||||||||| Sbjct 334 CCCCTTCACC-CCCGCGCCAACGAAGGTCCTCGAGCTGTCGCTGCGCGAAGCGCTGCAGC 276 Query 153178 TCGGCCAC 153185 | |||||| Sbjct 275 TGGGCCAC 268 >seq56393 Length=430 Score = 206 bits (228), Expect = 3e-48 Identities = 216/280 (77%), Gaps = 4/280 (1%) Strand=Plus/Minus Query 156595 GAGCTGTTCGACAACGA-GCAGGAGTACACCCAGGACCTCTACGACGCCACCGGCCAGAC 156653 ||||| | |||||||| || || |||||| | | || ||||| | | ||||| ||| Sbjct 428 GAGCTCTATGACAACGAAGCGCGA-TACACCGAAGCGCTTTACGATGGCGTCGGCCTGAC 370 Query 156654 CGAGGACGTGAAGAAGTTCCTGCGGTACAACGGCAACAAGGCCCTGCAGAACCTGGGCTA 156713 ||||||||| ||||||||||||| ||||| | ||||||||| ||| |||||| ||||| Sbjct 369 CGAGGACGTCAAGAAGTTCCTGCACTACAATGCCAACAAGGCGCTGATGAACCTCGGCTA 310 Query 156714 CGACGCGCTGTTCAGCCGCAGCGACTGCGACGTCAACCCGGCCATCCTGAGCGCGCTGTC 156773 ||| || |||||| |||| | | |||| | ||||| ||||||||||| |||||||| Sbjct 309 CGAGGCACTGTTCCGCCG--GAGGCTGCAAGGTCAATCCGGCCATCCTTTCGGCGCTGTC 252 Query 156774 GCCCGGTGGAGACGAGAACCACGACTTCTTCTCGGGGTCGGGCAGCACGTACGTCATGGC 156833 |||| || || |||||||||||||||||||| || ||||| | || ||||| | Sbjct 251 GCCCAATGCCGATGAGAACCACGACTTCTTCTCCGGCTCGGGTTCGTCCTATGTCATCGG 192 Query 156834 CAAGGGTGTGGTCACCGAAGACGACGACTGGGACTTCTGA 156873 ||||| ||| ||||||||||| || ||||| |||||| Sbjct 191 CAAGGCGGTGAGTACCGAAGACGAGGATTGGGATTTCTGA 152 >seq56368 Length=283 Score = 196 bits (216), Expect = 5e-45 Identities = 220/289 (76%), Gaps = 13/289 (4%) Strand=Plus/Plus Query 156520 TTCCAGAAGGGCCTGGAGAAGGAGACCAAGGC---CCGCCAGCAGGAACTCAAGGACTAC 156576 |||||| ||| ||||| ||||| | | || ||||||||||| ||||||||| | Sbjct 1 TTCCAGCAGGCCCTGGCCAAGGAAAGCCCGGAGCGCCGCCAGCAGG---TCAAGGACTTC 57 Query 156577 ACCTATGAGCTGCTGTTCGAGCTGTTCGACAACGAGCAGGAGTACACCCAGGACCTCTAC 156636 |||| ||||||||| || || | ||||||||| || |||||| || |||||||| Sbjct 58 GCCTACGAGCTGCTGCAGGACCTCTATGACAACGAGGTGGCCTACACCGAG-ACCTCTAC 116 Query 156637 GACGCCACCGGCCAGACCGAGGACGTGAAGA--AGTTCCTGCGGTACAACGGCAACAAGG 156694 ||| | ||| || |||||||||||||| | ||||| | ||||||| |||||||| Sbjct 117 GACAGCGTGGGCTGGAGCGAGGACGTGAAGAGAAATTCCTTCACTACAACGCCAACAAGG 176 Query 156695 CCCTGCAGAACCTGGGCTACGACGCGCTGTTCAGCCGCAGC--GACTGCGACGTCAACCC 156752 | ||| ||||||||||| ||| || |||||| | ||||| ||| |||||||| ||| Sbjct 177 CGCTGATGAACCTGGGCTTCGAAGCCCTGTTCCCCAGCAGCATGAC--CGACGTCAGCCC 234 Query 156753 GGCCATCCTGAGCGCGCTGTCGCCCGGTGGAGACGAGAACCACGACTTC 156801 ||| ||||| ||| ||||||||| | | |||||||||||||||||| Sbjct 235 GGCGATCCTCGCCGCCCTGTCGCCCAGCGCCGACGAGAACCACGACTTC 283 >seq22478 Length=2302 Score = 196 bits (216), Expect = 5e-45 Identities = 342/488 (70%), Gaps = 10/488 (2%) Strand=Plus/Plus Query 156382 CTGGAGGGCTTCCTGTTCTACAGCGGCTTCTACCTGCCGATGTTCTGGTCGTCGCGAGGC 156441 |||||| || ||||| || ||||||| |||||||||| |||||| || ||| Sbjct 50 CTGGAGTCGTTTCTGTTTTATTCGGGCTTCTGGCTGCCGATGTACTGGTCCAGCCGCGGC 109 Query 156442 AAGCTCACCAACACCGCCGACATGATCCGGCTCATCATCCGGGACGAGGCCGTGCACGGC 156501 ||||| ||||| || || || |||| || | |||||||| || ||||| || |||||| Sbjct 110 AAGCTGACCAATACGGCGGATCTGATTCGTTTAATCATCCGCGATGAGGCGGTACACGGC 169 Query 156502 TACTACATCGGCTACAAGTTCCAGAAGGGCCTGGAGAAGGAGACCAAGGCCCGCCAGCAG 156561 ||||| |||||||| || | |||||| | || ||| ||| ||| ||||| || Sbjct 170 TACTATATCGGCTATAAATACCAGAAAGCGCTTGAGCAGGTCGATGAGGGCCGCC-GC-- 226 Query 156562 GAA--CTCA-AGGACTACACCTATGAGCTGCTGTTCGAGCTGTTCGACAACGAGCAGGAG 156618 ||| || | || | | | || || |||||| | | ||||| || || || || Sbjct 227 GAAGCCTTACAGCAGTTCGCCATCGATCTGCTGCTGGCGCTGTATGAAAATGAAGTGGCC 286 Query 156619 TACACCCAGGACCTCTACGACGCCACCGGCCAGACCGAGGACGTGAAGAAGTTCCTGCGG 156678 || || | | || |||| || || ||| | | || || ||||| | ||||||| Sbjct 287 TATACAGAAGCGCTGTACGGCGAAACAGGCTGGGCAGACGAGGTGAAAACCTTCCTGCAT 346 Query 156679 TACAACGGCAACAAGGCCCTGCAGAACCTGGGCTACGACGCGCTGTT-CAGCCGCAGC-G 156736 ||||||| ||| || || || ||| ||||||||||| || ||||| | | || ||| | Sbjct 347 TACAACGCCAATAAAGCGTTGATGAATCTGGGCTACGAGGCTCTGTTCCCGGCGGAGCTG 406 Query 156737 ACTGCGACGTCAACCCGGCCATCCTGAGCGCGCTGTCGCCCGGTGGAGACGAGAACCACG 156796 || || | ||||| |||||||| ||| || ||||| ||| || || |||||||| | Sbjct 407 AC-GC-AGGTCAATCCGGCCATTCTGGCGGCACTGTCACCCAATGCGGATGAGAACCATG 464 Query 156797 ACTTCTTCTCGGGGTCGGGCAGCACGTACGTCATGGCCAAGGGTGTGGTCACCGAAGACG 156856 | ||||||||||| || || | ||||| |||| || | || | |||||||||| Sbjct 465 ATTTCTTCTCGGGCTCAGGATCGTCTTACGTGATGGGGAAAGCGGTCGAAACCGAAGACG 524 Query 156857 ACGACTGG 156864 | |||||| Sbjct 525 AAGACTGG 532 >seq38326 Length=251 Score = 172 bits (190), Expect = 6e-38 Identities = 193/255 (76%), Gaps = 10/255 (4%) Strand=Plus/Plus Query 155979 GTGGAACCGGCTGACCAACAACTTCTGGCTGCCGGAGAAGATCCCGGTGTCCAATGACGT 156038 |||||| || |||||| |||||||||||||||||| ||||||||| ||||||| ||| | Sbjct 1 GTGGAATCGCCTGACCGGCAACTTCTGGCTGCCGGAAAAGATCCCGCTGTCCAACGACAT 60 Query 156039 CCAGTCGTGGC--ACCAGCTGAC---CGAGGAAGAGCGCCTGATCACCATGCGGGTGTTC 156093 || || ||| ||| ||||| | ||||| ||| |||| |||| || || ||| Sbjct 61 CCCCTCCTGGGCGACC--CTGACGCCCAAGGAACAGCAGCTGA---CCATCCGCGTCTTC 115 Query 156094 ACCGGCCTGACGATGCTGGACACCATCCAGGGCACCGTCGGCGCGGTCTCGCTCATCCCG 156153 ||||||||||| ||||||||||||||||| | |||| ||||| |||| | | Sbjct 116 ACCGGCCTGACCCTGCTGGACACCATCCAGAACGCCGTGGGCGCCCCGACGCTACTGGCC 175 Query 156154 GACGCCATCACCCCGCACGAGGAGGCGGTGTACACCAACATCGCGTTCATGGAGAGCGTG 156213 || ||| |||| || |||||||| |||||| | ||||||||| ||||||||| ||| Sbjct 176 GATGCCGTCACGCCCCACGAGGAAGCGGTGATCGCCAACATCGGCTTCATGGAGGCGGTG 235 Query 156214 CACGCACGCAGCTAC 156228 || || ||| |||| Sbjct 236 CATGCGCGCTCCTAC 250 >seq51529 Length=714 Score = 140 bits (154), Expect = 3e-28 Identities = 101/117 (86%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 155934 CGCCATCAACTGGAACCGCGTGATCGACGAGAAGGACGCGGAGGTGTGGAACCGGCTGAC 155993 ||| |||||||||||||| || |||||||||||| |||| | ||||||||||| || Sbjct 595 CGCGATCAACTGGAACCGTCTGCAGGACGAGAAGGACCTGGAGATCTGGAACCGGCTCAC 654 Query 155994 CAACAACTTCTGGCTGCCGGAGAAGATCCCGGTGTCCAATGACGTCCAGTCGTGGCA 156050 || |||||||||||||||||||||| ||||| ||||||| ||||| ||||||||||| Sbjct 655 CAGCAACTTCTGGCTGCCGGAGAAGGTCCCGCTGTCCAACGACGTGCAGTCGTGGCA 711 >seq27287 Length=11113 Score = 100 bits (110), Expect = 3e-16 Identities = 90/113 (80%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 135996 TTCCACTTCGACGAGAACGTCGGCGTGGCGCGGGCGAAGAACAAGTGCATCGAGCTGCTC 136055 |||| ||||| |||| ||||| | || ||| |||||||| ||| | || |||||| Sbjct 10401 TTCCGTTTCGAAAAGAATGTCGGTATCGCTGCGGCAAAGAACAAATGCTTTGAACTGCTC 10342 Query 136056 ATGGACGCGGGCTGCGAGCACCTGTTCCTGTTCGACGATGATTGCTGGCCCAA 136108 |||||||| ||||| || || || |||||||| ||||||||||||||||| || Sbjct 10341 ATGGACGCAGGCTGTGAACATCTTTTCCTGTTTGACGATGATTGCTGGCCTAA 10289 >seq14835 Length=971 Score = 89.7 bits (98), Expect = 5e-13 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 92615 GCGGGGTAGAGCAGCTCGGTAGCTCGCCAGGCTCATAACCTGGAGGCCGTGGGTTCAAAT 92674 ||||||| ||||||| |||||||||| ||||||||||||||| ||| ||| ||||||||| Sbjct 729 GCGGGGTGGAGCAGCCCGGTAGCTCGTCAGGCTCATAACCTGAAGGTCGTAGGTTCAAAT 788 Query 92675 CCCACTCCCGCCACTAG 92691 || | ||||| || || Sbjct 789 CCTGCCCCCGCAACCAG 805 >seq34909 Length=2663 Score = 86.0 bits (94), Expect = 7e-12 Identities = 80/102 (78%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 155934 CGCCATCAACTGGAACCGCGTGATCGACGAGAAGGACGCGGAGGTGTGGAACCGGCTGAC 155993 ||| || ||||||||||| | || ||||| || ||||| |||||||| ||||| Sbjct 2516 CGCGATTAACTGGAACCGGATTCAGGATGAGAAAGATCTTGAGGTCTGGAACCGTCTGAC 2575 Query 155994 CAACAACTTCTGGCTGCCGGAGAAGATCCCGGTGTCCAATGA 156035 | |||||||||| ||||||| || |||||| |||||||||| Sbjct 2576 AAGCAACTTCTGGTTGCCGGAAAAAATCCCGCTGTCCAATGA 2617 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 525740702856000