Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_011335.1 Length=119343 Score E Sequences producing significant alignments: (Bits) Value seq6766 86.0 5e-12 seq8838 82.4 6e-11 >seq6766 Length=1461 Score = 86.0 bits (94), Expect = 5e-12 Identities = 108/146 (74%), Gaps = 2/146 (1%) Strand=Plus/Plus Query 118149 CCGTAAAAGGCGATACACTCCGACAGTTTTCCGTCGCGACCGGCCCTTCCTATCTCTTGA 118208 |||||||| | || || ||||| | || ||||| ||||| || | ||| |||| ||| Sbjct 388 CCGTAAAAAGA-ATGCAGTCCGAGGGCTTGCCGTCTCGACCAGCGCGCCCTGTCTCCTGA 446 Query 118209 TAATAACCGTCCAGTGATTTGGGCATACTGTGATGTATCACCAACCGCACGTCGGGTTTA 118268 || || || || || ||||||| | ||||| ||||| || |||||||||||||| Sbjct 447 TAGTATCCCTCAAGACTCTTGGGCAGGCCATGATGCATCACAAATCGCACGTCGGGTTTG 506 Query 118269 TCGATGCCCATCCCGAACGCTATCGT 118294 || || ||||| || ||||| || || Sbjct 507 TCAATACCCATACC-AACGCGATGGT 531 >seq8838 Length=703 Score = 82.4 bits (90), Expect = 6e-11 Identities = 91/120 (76%), Gaps = 1/120 (1%) Strand=Plus/Minus Query 58546 GAGGCGGTGCACATCGACGCATACTCTCATC-TAATAGAGACGCTCGGCATGCCCGAGAG 58604 ||| |||||||||||| || ||||| || | | | || ||| |||||||||||||||| Sbjct 568 GAGACGGTGCACATCGCGGCTTACTCGCACCCTGCTCGACACGATCGGCATGCCCGAGAG 509 Query 58605 CACCTACCGCGAGTTCCTGGAGTACCACGAGATGAAGGAGAAACAAGACTACATCAAGAA 58664 | ||| ||| ||||| || || |||||||||||| || || || ||||| |||| Sbjct 508 CGAGTACGGCGCCTTCCTCGAATATGGCGAGATGAAGGACAAGCATGATTACATGCAGAA 449 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381166532863200