Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq51865 120 3e-22 seq79110 93.3 4e-14 seq117378 89.7 5e-13 seq44974 89.7 5e-13 seq28556 89.7 5e-13 seq29103 87.8 2e-12 >seq51865 Length=821 Score = 120 bits (132), Expect = 3e-22 Identities = 317/475 (67%), Gaps = 12/475 (3%) Strand=Plus/Plus Query 52326 GTGCCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAG-CGACACCGC 52384 || || ||| | |||||||||||| | ||||| || ||||||| | | | | | | Sbjct 351 GTTCCCTGCATCCGCAAAAAGGCTGACTGGGCCCTGCGGTGGATCTCCGGACAAAAACTC 410 Query 52385 CACGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAG 52444 ||| | ||| | || |||| || ||||| || || || | || || ||| Sbjct 411 CACCTTTGCCAACCGTCTGGTAGCGTTCGCTGCGGTGGAAGGAATCTTCTTCAGTGGCTC 470 Query 52445 CTTTGCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAA 52504 || ||| ||||||| | | || | | ||| | ||||||||||| || || ||| Sbjct 471 TTTCGCCTCCATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCCGGCCTCACCTTTTCCAA 530 Query 52505 CGAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTCTACTACAAGAC 52564 |||| | || ||||| |||||||| ||||||| |||||||| ||||| || | | Sbjct 531 CGAGCTCATCTCGCGTGACGAAGGCATGCACACCGACTTTGCCTGCCTGCTCTTCT---C 587 Query 52565 GCGCGTGACCGAAAAATTGGATTCGGACACGATCCTG--AGC-ATGTTCAAGGAGGCGGT 52621 || | | | | || | | | ||| | || ||| || ||| ||||| || Sbjct 588 GCTCCTCAAC--AACCGCCCCTCCAAAGACGC-CGTGCAAGCCATCATCACCGAGGCCGT 644 Query 52622 GGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGC 52681 | ||||| |||||||| | | | ||| ||||| | |||||| ||||||||||| Sbjct 645 CGAGATCGAGAAGGAGTTCCTGTCCGACGCCCTGCCTTGTGCGCTGCTCGGCATGAACGC 704 Query 52682 GCAGTC-CATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGGC 52740 || | ||||||| ||||||| |||||||| || || || ||| || | ||||| Sbjct 705 -CACCCTCATGTGCCAGTACATTGAGTTTGTCGCCGACCGGCTGCTGCTCTCCCTCGGCA 763 Query 52741 AGCCAAAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCT 52795 | | | ||||| | |||| ||| || ||||| |||||| | ||||| ||||| Sbjct 764 ACACGAGGTACTACCACGCCACCAACCCTTTTGACTTTATGGAGAACATCTCGCT 818 >seq79110 Length=913 Score = 93.3 bits (102), Expect = 4e-14 Identities = 71/84 (85%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 154373 GTACGTTTCGATGGCGTCTTCGATATCATCGCCGTGAATGCCGAGCGCGACGCGCATGAG 154432 ||||||||||||||| | ||||||||| ||||||||||| |||| ||||| ||||||| Sbjct 781 GTACGTTTCGATGGCCTTTTCGATATCCTCGCCGTGAATACCGACAGCGACACGCATGAT 722 Query 154433 CATGTGCTGCGGACGTTCGGCGAC 154456 |||||| || || || ||||| || Sbjct 721 CATGTGTTGTGGGCGCTCGGCAAC 698 >seq117378 Length=621 Score = 89.7 bits (98), Expect = 5e-13 Identities = 324/490 (66%), Gaps = 18/490 (4%) Strand=Plus/Plus Query 153081 GTGAAAGGTTCAAAGGATTCGTTATTGCCTAGTATTTGAGCCGTGGTTGCGGTCGGCATG 153140 ||| | || || ||| | ||||| ||||| || || || | || | || || |||||| Sbjct 22 GTGTAGGGCTCGAAGCACTCGTTGTTGCCCAGAATCTGTGA-GTCGAGGCAGTGGGCATG 80 Query 153141 TACGCCACCAACAAAGAATTCCGCAAGCCGTGCGCTCGAATGTCGTCCTTCAACGCCTGC 153200 || | || |||||| || || | ||||||| | | || || | | | | | | Sbjct 81 GG-GCGAGCAGCAAAGAGTTGCGAATGCCGTGCTCCCTGATCTCCGCTCTGAGAGTATCC 139 Query 153201 CAATCCCACAGCGCCGACGGTGTCGCGTTCCACATGTCGTACTGTA--ACACTCCTCGAC 153258 || ||||||| | || || | | |||||||||||| |||| | | || ||||| Sbjct 140 CACTCCCACAAATCGGAAGGCTTAACATTCCACATGTCGAACTGGAGAATAC-CCTCGGA 198 Query 153259 TGGCGGGACTGCCGGCAAACGTACTGTA-GCTGCCGTCGCGTTGGGCCAGTTCG-CAGCT 153316 ||||||| ||| || || ||| | | || | | |||| ||| ||| ||| Sbjct 199 -GGCGGGAGAGCCCTTGAAGGTGGAGTAAGGTCCCTGCTCCTTGG-CCAACTCGACAG-- 254 Query 153317 AGCC--TCGAGCGCGCCATAGTATATGGTTTCGGCGATTTGTTTATTGAGAACGGCCGCT 153374 || | || || || | | ||| ||||| || |||||| || ||||| | ||| Sbjct 255 AGGCAGTC-AGAGCAGCGTGGTAGATGGTCTCAAAGATTTGCTTGTTGAGCTCACGAGCT 313 Query 153375 TCTTCGCTCTCGTACGGCATGCGCAGCAGCACAAAGGCGTCGGCCAGACCCTGGATACCG 153434 || |||| ||||||||||||| || || || ||||| |||||||||| ||| Sbjct 314 TCGGGAGACTCGAACGGCATGCGCAGAGCCAGGAACGCATCGGCAAGACCCTGGACACCA 373 Query 153435 ACGCCGATGGGTCGATGCTTCTCGTTGCTGCGCCTCGCGCTCGCT--ATGGGATAGTGAT 153492 || ||||| ||||| || | ||| ||| | || ||| || | || ||||| | Sbjct 374 ACACCGATAGGTCGGTGTCGCATGTTACTGTTGCGAGC-CTC-CTGAACAGGGTAGTGGT 431 Query 153493 TGCGATCGATAATTTTGTTGAGGTTGCGCACCACCACTTTAGTTATCGCCTTAAGTTTCT 153552 || ||| || || ||||| | |||||| || ||||| | ||| | | | | ||||||| Sbjct 432 TGACATCAATGATCTTGTTCAAGTTGCGGACAACCACCTGAGTAACCTCGTGGAGTTTCT 491 Query 153553 CGAAATCATA 153562 ||| ||||| Sbjct 492 TGAAGTCATA 501 >seq44974 Length=881 Score = 89.7 bits (98), Expect = 5e-13 Identities = 152/215 (71%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 52626 ATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCAG 52685 ||||| | ||||| || || | || |||| || || || || |||||||| | Sbjct 492 ATCGAGCAAGAGTTCTTGACAGAGGCATTGCCATGCGCTCTCCTCGGTATGAACGCCACG 433 Query 52686 TCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGT-GCAGCTCGGGCAGCC 52744 | ||| ||||||| || || || || ||||| || |||| ||| || ||| | | Sbjct 432 TTGATGAAGCAGTACATTGAATTCGTCGCCGATCGCCTCCTGGTTGCA-CT-GGGTAACG 375 Query 52745 A-AAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGCA 52803 | ||| | ||| || ||| || ||||| || ||| | |||||||| || | |||| Sbjct 374 AGAAGGTGTACAAGACTGCCAACCCCTTTGATTTCATGGAGAACATTTCCCTAGGCGGCA 315 Query 52804 AGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTAT 52838 |||| ||||| || ||||||||||||||||||||| Sbjct 314 AGACGAACTTCTTTGAGAAGCGAGTCGGCGAGTAT 280 >seq28556 Length=388 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 ||||| || | || | || || || | | | |||||||||||||||||||| || Sbjct 56 CCGCCACGAAGTCGAAGGACCAAGTGAAGGGTAGACTCCTTTTGAATGTTGTAATCAGAG 115 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| || || || || || |||| |||| |||||||| ||||||||||| Sbjct 116 AGGGTACGGCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAGGA 175 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||||||||| ||| || || | |||| || | ||| || | ||||| || Sbjct 176 ATGCCTTCTTTGTCCTGGATCTTCGACTTGACATTG-TCAATGGTATCCGAAGACTCTAC 234 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | ||| | || || || || || || || || || || ||||| Sbjct 235 TTCTAGCGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATTTGCAT 282 >seq29103 Length=1863 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/221 (71%), Gaps = 5/221 (2%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTT-GACTCCTTTTGAATGTTGTAGTCGCT 138446 || ||||| | ||| | ||| || || | | | ||||||||||||||||||||||| Sbjct 1062 CCACCTCGGAGACGAAGAACCAAGTGGACGCGTCGACTCCTTTTGAATGTTGTAGTCTGC 1121 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | ||| || |||||| || || || |||| | |||| || ||||| |||||||| || Sbjct 1122 AAGAGTGCGGCCGTCCTCAAGCTGCTT-CCGGCA-AGATCAGGCGCTGCTGGTCCGGGGG 1179 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCA 138565 || || || ||||| ||| || || | |||| || | ||||||| ||||| | Sbjct 1180 AATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTG-TCGATCGTGTCGGAGGACTCGA 1238 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAA 138606 |||| | || | || || || ||||| || || || ||| Sbjct 1239 CCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAA 1279 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495454112616000