Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_011551.1 Length=39867 Score E Sequences producing significant alignments: (Bits) Value seq56734 150 5e-32 seq39396 140 8e-29 seq53235 104 6e-18 seq44328 96.9 9e-16 >seq56734 Length=385 Score = 150 bits (166), Expect = 5e-32 Identities = 174/232 (75%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 25812 GTCAATTTTCTTGGCATGCTCAGTCAGGTGGCTGGGCGAAAGGTGTGCGTAACGACGTAC 25871 |||||| || ||||| || ||||||||| | || | |||||||| || | ||||| Sbjct 278 GTCAATCTTGCGCGCATGTTCGGTCAGGTGGTTAGGTGCCAGGTGTGCATACCTGCGTAC 219 Query 25872 CATTTCGATAGATTCCCAGCCGCCCATTTCCTGCAAAACAGAGAGTGGAACACCTGATTG 25931 ||||||||| |||||| || |||||||||||||| | || |||||||| |||| || Sbjct 218 CATTTCGATGCTTTCCCATCCTCCCATTTCCTGCAATGCCGAAAGTGGAACGCCTGCCTG 159 Query 25932 TATCAGCCAACTTGCCCAAGTATGTC-TAAGATCATGAAAACGAAAATTTTCTATTCCGG 25990 |||||||| |||||||| ||||| | |||| ||||||||||| |||| || || || | Sbjct 158 AATCAGCCAGCTTGCCCAGGTATGACGTAAG-TCATGAAAACGGAAATCCTCAATGCCTG 100 Query 25991 CTCGTTTTAATGCCGCCCTCCATGCCGTATTAGAATCGACCCGCATTTTTCT 26042 | || || | | | || ||| ||||| ||| ||| |||||||| || Sbjct 99 CCCGCTTGAGTCCTATCCGCCACGCCGTGTTATCATCACAGCGCATTTTCCT 48 >seq39396 Length=387 Score = 140 bits (154), Expect = 8e-29 Identities = 173/230 (75%), Gaps = 5/230 (2%) Strand=Plus/Plus Query 25811 CGTCAATTTTCTTGGCATGCTCAGTCAGGTGGCTGGGCGAAAGGTGTGCGTAACGACGTA 25870 |||||||||| || |||||||||||||| | || | |||||||| || | |||| Sbjct 162 CGTCAATTTTGCGTACAAGCTCAGTCAGGTGGTTAGGTGCCAGGTGTGCATACCTGCGTA 221 Query 25871 CCATTTCGATAGATTCCCAGCCGCCCATTTCCTGCAAAACAGAGAGTGGAACACCTGATT 25930 ||||| | || | |||||| ||||||||| |||| || |||| ||||||||||||| | Sbjct 222 CCATT-CTAT-GCTTCCCATCCGCCCATT-CCTGTAATGCAGAAAGTGGAACACCTGCCT 278 Query 25931 GTATCAGCCAACTTGCCCAAGTATGTC-TAAGATCATGAAAACGAAAATTTTCTATTCCG 25989 | || ||||| |||||||| ||||| | |||| ||||||||||| |||| || || || Sbjct 279 GAATAAGCCAGCTTGCCCAGGTATGCCGTAAG-TCATGAAAACGGAAATCCTCAATGCCT 337 Query 25990 GCTCGTTTTAATGCCGCCCTCCATGCCGTATTAGAATCGACCCGCATTTT 26039 || || || | | | || ||| ||||| ||| ||| |||||||| Sbjct 338 GCCCGCTTGAGTCCTATCCGCCACGCCGTGTTATCATCACAGCGCATTTT 387 >seq53235 Length=843 Score = 104 bits (114), Expect = 6e-18 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 18620 GAACATATTCTTTATACCCCGATGATAAAAGCGGATAATGCCCGATTATTTGATTTTGAA 18679 |||||||| ||||||||||| ||| | ||||| ||| ||| || | |||||| |||| Sbjct 329 GAACATATCCTTTATACCCCAATGTTTAAAGCCGATGGGGCCAGAGTTTTTGATCTTGAG 270 Query 18680 CTGGAAGCTTCAACGGGTGTTGCTCAAATCGCGGATAAGTTATTTCTGTCTGTCACAACA 18739 || || ||||||| || |||| || | || || | |||||| | || | ||| | Sbjct 269 CTTGATTCTTCAACAGGCGTTGAGCAGGTTGCTGAAAGGTTATTCATTTCGGCAACAGCG 210 Query 18740 GACGGCATTAATTACAGCAGAGAACAACTAATAGAACAAAATTCCCCTTTTCAGTATGAC 18799 || || |||||||| ||||||| ||| | || ||| | ||||| |||||| Sbjct 209 GATGGAATTAATTATGGCAGAGAGCAAATGATCCCCTGGAATGCTCCTTTCACCTATGAC 150 Query 18800 AAACGCATTCTCTGGCGACGGATTGGACGCGTGAGAAAAAATATCGGCTT 18849 || || |||||| | || ||||| || || || ||||| || || || Sbjct 149 AAGCGGGCGCTCTGGAGGCGAATTGGCCGTGTCAGGAAAAACATAGGATT 100 >seq44328 Length=3229 Score = 96.9 bits (106), Expect = 9e-16 Identities = 142/200 (71%), Gaps = 1/200 (1%) Strand=Plus/Minus Query 26086 GTATGTACGAATACCCATTTTTGATGATTACCCAATTGTCGCGTCAGAATACAGCAAGCC 26145 || || ||||| |||||| | |||||| || | || | |||| | | ||| || Sbjct 3216 GTGTGAACGAA-ACCCATCGTGAATGATTTCCTATCTGCTCCTTCAGCACCCGGCATGCG 3158 Query 26146 GTATCGTTTAGAGCTACACCTATAGCTTTTCCCGATTTGCTGTTTTCTGGCTCTATCCAG 26205 ||||| || || || || || ||||| || |||| |||| ||| || || | |||||| Sbjct 3157 GTATCATTCAGCGCCACGCCAATAGCCTTGCCCGCTTTGGCGTTCTCCGGATTTATCCAT 3098 Query 26206 GCAACTTTTCTTTGCATATCAATTTGTGACCACGCTAAATTAATGATATTTGAACGACGT 26265 || || || ||||||||||||| || | ||| | | || | || |||||||| ||| Sbjct 3097 GCCACCTTCCTTTGCATATCAACCTGCGTCCATTCCAGATCCAGAATGTTTGAACGGCGT 3038 Query 26266 AACCCGGTTGCCAGCGCAAA 26285 |||||||| | || ||||| Sbjct 3037 AACCCGGTGGAGAGAGCAAA 3018 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127255590689400