Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_011589.1 Length=40287 Score E Sequences producing significant alignments: (Bits) Value seq50247 268 2e-67 seq42978 132 1e-26 seq80598 86.0 2e-12 >seq50247 Length=1652 Score = 268 bits (296), Expect = 2e-67 Identities = 418/593 (70%), Gaps = 11/593 (2%) Strand=Plus/Plus Query 24791 CCAATCATTTCCTGGCCGGGCGGCAAGCGCCGCCTCCTGAAGCACCTCTATCCGCACTTC 24850 || |||||| ||||| ||||||||||||||| ||| | | ||| |||| ||| Sbjct 684 CCGATCATTCCCTGGATGGGCGGCAAGCGCCGTCTCGCCGACCGAATCTTCCCGCTGTTC 743 Query 24851 CCGACCCACGACTGCTACGTCGAGGCATTCGCCGGCGGTGCCGCGTCGTTGCTTATGCGG 24910 || | ||| ||||||||||||| | |||||||| || ||||||| ||| | | || Sbjct 744 CCCAAGCACAGCTGCTACGTCGAGCCCTTCGCCGG-GGCGCCGCGTTGTTCTTCCTTCGC 802 Query 24911 CCG-TACCCAGCACAGATGGAGGTGCTCAACGACATCAACGGCGAGCTGGTGTCCCTGTA 24969 ||| ||||| || || ||||||||||||||||| |||||||||| ||||| || || Sbjct 803 CCGGTACCC-GCCGAGGTGGAGGTGCTCAACGACGTCAACGGCGACCTGGTCAATCTCTA 861 Query 24970 CCGCTGCGTGCGCCACCACCTGGATGAGTTCGTGCGCATGTTCCGCTGGTCCCTGGTCTC 25029 ||| ||| | ||||||||||| |||||||| ||| |||| ||| | ||| ||| Sbjct 862 CCGGGTCGTCCAGCACCACCTGGAGGAGTTCGTCCGCCAGTTCAAGTGGGCGCTGAGCTC 921 Query 25030 GCGACAGATGTTCGAGTGGGCACAGATGGAGCGCCCGGAGACGCTGACCGACATCCAGCG 25089 || ||| | ||| | ||| |||||| | ||||||||||||||||||||||||||| Sbjct 922 CCGCCAGGTCTTCAAATGGCTGCAGATGACGAACCCGGAGACGCTGACCGACATCCAGCG 981 Query 25090 CGCAGCGCGGTTCTACTACCTGCAAAAGCTGGCATTCGGCGGCAAGGTGCAGGGGCAATC 25149 ||| || || |||||||||||||| || ||| || || |||||||| || || | Sbjct 982 CGCCGCACGCTTCTACTACCTGCAGCAGTCGGCCTTTGGTGGCAAGGTCGCCGGCCAGAC 1041 Query 25150 GTTCGGTGTGGTGACGGCTGGTGGGCCGCGATTGAACCTTCTGCGCATTGAAGAGGAACT 25209 ||||||| | ||| | ||| | ||||||| |||||| | || ||| || Sbjct 1042 GTTCGGTACCGCCACGACCACGCCGCCTGGCCTGAACCTGCTGCGCCTCGAGGAGACCCT 1101 Query 25210 GAGCGCGGTGCATCTTCGCCTGGCAAACACCGTAATCGAGTGCCTGCCATGGCAGGAGTG 25269 | || | ||| || ||||| | | | ||||| |||| | |||||||| || Sbjct 1102 GTCGGCTGCGCACCTGCGCCTATCCGAGGTCTATGTCGAGCACCTGGCCTGGCAGGACTG 1161 Query 25270 CGTGCGGCGCTACGATCGCCCGGGA----ACACTGTTCTACCTTGATCCGCCCTACTGGG 25325 | |||| ||||| |||||| || || |||||| | || ||||||||||||| Sbjct 1162 CATGCGCAAATACGA----CCGGGAGCACACGCTCTTCTACATGGACCCGCCCTACTGGG 1217 Query 25326 AAACCGAGGGCTATGGCGTTGAGTTCCCGTTTGCTGAGTACGAGGCGATGGCC 25378 | || || || || ||| | ||| || | |||| |||| ||||||| Sbjct 1218 AGACGGAAGGGTACGGCATGCCCTTCGGCTTCGAGCAGTATGAGGAGATGGCC 1270 >seq42978 Length=612 Score = 132 bits (146), Expect = 1e-26 Identities = 183/251 (73%), Gaps = 10/251 (4%) Strand=Plus/Plus Query 24866 TACGTCGAGGCATTCGCCGGCGGTGCCGCGTCGTTGCTTATGCGGCCGT-ACCCAGCACA 24924 |||||||| |||||||||||||| || ||| | || | || ||| | || || | Sbjct 354 TACGTCGAAGCATTCGCCGGCGGCGCAGCGCTGCTGTT----CGCCCGCGAGCCGGCGAA 409 Query 24925 GATGGAGGTGCTCAACGACATCAACGGCGAGCTGGTGTCCCTGTACCGCTGCGTGCGCCA 24984 | | || ||| ||||||| | | |||||||||||| ||| || ||| ||| | | Sbjct 410 GGTCGAAGTGATCAACGATGTGCATGGCGAGCTGGTGCGCCTCTATCGCGTTGTGGCCAA 469 Query 24985 CCACCTGGATGAGTTCGTGCGCATGTTCCGCTGGTCCCTG--GTCTCGCGACAGATGTTC 25042 ||||||||| |||||| ||||| | |||| ||| | ||| | |||| | |||||| Sbjct 470 CCACCTGGACGAGTTCATGCGCCAG-TCCGGTGGGCACTGACGAGCCGCG--AAATGTTC 526 Query 25043 GAGTGGGCACAGATGGAGCGCCCGGAGACGCTGACCGACATCCAGCGCGCAGCGCGGTTC 25102 ||||||| ||| | ||| ||| || ||||| || ||||| ||||| || || |||||| Sbjct 527 AAGTGGGCGCAGCTCCAGCACCCTGAAACGCTCACTGACATTCAGCGTGCGGCTCGGTTC 586 Query 25103 TACTACCTGCA 25113 | ||||||||| Sbjct 587 TTCTACCTGCA 597 >seq80598 Length=589 Score = 86.0 bits (94), Expect = 2e-12 Identities = 78/96 (81%), Gaps = 2/96 (2%) Strand=Plus/Plus Query 662 TGGCCGAGGGCTACGCCACTGCGGCCACGCTG-CACATGGCTACGGGCTACCCGGTGGCC 720 ||||||||||||| ||||||||||| | |||| ||| ||| ||||||| ||||||||| Sbjct 449 TGGCCGAGGGCTATGCCACTGCGGCGA-GCTGCCACGAGGCGACGGGCTGGCCGGTGGCC 507 Query 721 GTGGCGTTCGATGCCGGCAACATGCTGGCCGTCGCC 756 |||| ||||| | |||||| ||| ||||| ||| Sbjct 508 GTGGGTATCGATTCTGGCAACCTGCCAGCCGTGGCC 543 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 128597511101400