Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_011613.1 Length=36632 Score E Sequences producing significant alignments: (Bits) Value seq74251 168 2e-37 seq60360 141 2e-29 seq53231 107 4e-19 >seq74251 Length=708 Score = 168 bits (186), Expect = 2e-37 Identities = 327/471 (69%), Gaps = 30/471 (6%) Strand=Plus/Minus Query 3263 CATGAAATCAAGGCGCTGCGCCCGTTCATTCGCCGC--GACTTCACCAAGCTGCTCCCGA 3320 || ||| ||||||| |||| || ||| || ||| ||| || || ||| |||| Sbjct 684 CAGGAACTCAAGGCCCTGCAACCTTTCCGCCGACGCTCGAC--CAAAAACCTGTTCCCCG 627 Query 3321 CCGACGTCTATTCATGC--GACGGCCACACGTTCGACGCCGAGGTCCAGCACCCGATGCA 3378 ||||||| ||| | |||||||||| ||||||||||||| || |||| || Sbjct 626 GGGACGTCT--TCACGGCGGACGGCCACAAGTTCGACGCCGAGATCATCAACCCTCTGAC 569 Query 3379 CGGCCGGCCCTTCCGGCCGGAAATCACCACCATCATCGACATCCGTACCCGTCGAATTCC 3438 |||| ||| | | | |||||||||||||| | |||||| || ||||| || | Sbjct 568 GGGCCAGCCGTACAGACCGGAAATCACCACGGTTATCGACGTCGCCACCCGGCGCGTAGT 509 Query 3439 GGGATGGTCCACCGGCTTGGCCGAGTCGGCCCTGGTGGTGGTCGATGCCCTGCGTGACGC 3498 ||| || |||| ||||||||||||| | | ||| | || | |||||||||||| Sbjct 508 GGGTATTTCGGTCGGCGAGGCCGAGTCGGCCATCGGTGTGCTGGACG-CCTGCGTGACGC 450 Query 3499 CTGCACCAAGGGCG-GCATTCCGGCCATCTTCTACGTGGACAACGGCTCGGGCTACATCA 3557 | | || || |||| || | |||||||||||||| || ||||||| | || Sbjct 449 CATC----CGGTCGTGCATGTTCGCTGTGTTCTACGTGGACAATGGTTCGGGCTTCGCCA 394 Query 3558 ACCACATGATGCGCGACGAGGCGGTCGGCCTTATGGGCCGCCTGGGCATCGA-TATGAAG 3616 | ||| ||||||| ||||| ||| |||||||||| ||| |||| | Sbjct 393 ATGACACAGTGCGCGA------GGTCG------TGGACCGCCTGGGCGGCGACCATGACG 346 Query 3617 AACAGCCTGCCCTACAACAGCCAGGCGCG-GGGCGTGATTGAGCGCGTCCACCAGAGCCT 3675 || |||||||||||||||||||| || || | || | ||||| | |||||||| | | Sbjct 345 CACTCGCTGCCCTACAACAGCCAGGCACGCGGTCCTG-TCGAGCGAG-CCACCAGACCAT 288 Query 3676 GTGGATTCGGGCCGCCAAGGAACTGCCCGGCTACATCGGCGCCGACATGGA 3726 ||| | || |||||| | ||| || ||||||||||||| |||||||| Sbjct 287 TTGGGTCAATGCGGCCAAGAAGCTGACCAGCTACATCGGCGCAGACATGGA 237 >seq60360 Length=752 Score = 141 bits (156), Expect = 2e-29 Identities = 224/313 (72%), Gaps = 11/313 (4%) Strand=Plus/Plus Query 25387 GCGACCGGCAAGGCTGTTTCGGATACGGTCGCCGAGTTCTCCAAG---CTGGCCGACGAA 25443 || ||||||||||| || ||||| |||||||||||||| |||| ||||||||||| Sbjct 53 GCCACCGGCAAGGCCGTCTCGGAGACGGTCGCCGAGTT---CAAGCGCCTGGCCGACGAG 109 Query 25444 CCGGTCAAAGCCTC-GCAGCAGCTCAACGAGAAATATCACTACCTGACCGCCTCGGTTTA 25502 ||| ||| ||||| || || ||| |||||| | || ||||||| |||||| |||| || Sbjct 110 CCGACCAAGGCCTCGGCCGC-GCTGAACGAGCAGTACAACTACCTCACCGCCGCGGTCTA 168 Query 25503 CGAGCAGATAGCCGCCCTCGATCAGCAAGGCGATTCGCTGGGTGCCGCCCAGCTGGCCAT 25562 ||| ||||| || || || |||| ||| | | | |||||| | |||||| Sbjct 169 CGACCAGATCCGGGCGCTGGAGGAGCAGGGCAACAAGACCGCCGCCGCCAACCTGGCCGA 228 Query 25563 GGATGCCTATAGCCAG-GCAATGGACGAGCGGGCGAGCCAGATCGTCGAGAACCTGGGCA 25621 || ||||| ||| | || || | ||||| || | | ||| |||||||| || | Sbjct 229 GGCGACCTAT-GCCGGCGCCTTGCAGGAGCGCGCCAAGAACATCAAGGAGAACCTCGGAA 287 Query 25622 CCCTGGAAACCGCTTGGAAGACCGTTGCCGGGGTGGCCAAGGGCGCCTGGGACGAAATGC 25681 || | || | || ||||||| ||| || | | |||||||| |||||||||| |||| Sbjct 288 CCATTGAGTCTGCCTGGAAGAGCGTCACCAGCGGCGCCAAGGG-GCCTGGGACGCGATGC 346 Query 25682 TCGGCGTGGGCCG 25694 || | | ||||| Sbjct 347 TCAACATCGGCCG 359 >seq53231 Length=1021 Score = 107 bits (118), Expect = 4e-19 Identities = 173/242 (71%), Gaps = 10/242 (4%) Strand=Plus/Plus Query 20906 CACTGCTGAGCT-GGTAGTGGACGGGCGTATCGAGTCCGACACCGCCTGGTTCCTGCTGG 20964 |||||| ||||| ||| || || ||| | || |||||||||||||||||||| | Sbjct 1 CACTGCCGAGCTTGGTGGTCGAGTCGCGCCTGACCTCGGACACCGCCTGGTTCCTGCTCG 60 Query 20965 ACACCACCAAGCCGGTAAAACCGTTCATCT-TCCAGCCCAGGAAGCAGCCGGAATTCGTT 21023 |||||| |||||| || || ||||||| || || | | ||| |||| | ||| Sbjct 61 ACACCAGCAAGCCAGTGCGGCCCTTCATCTATCAAGAGCGCAAGGCA-CCGGTCT-CGTC 118 Query 21024 TCCCAGGTCAACCTGGATTCGGATGACGTCTTCAACCTGCGCAAGCTG---AAGTTCGGC 21080 || || ||| || |||| ||||| ||||||| ||||| |||||||| Sbjct 119 CAGCAAATCGACCCCGAGGCGGACGACGTTTTCAACC---GCAAGGAATACAAGTTCGGT 175 Query 21081 GCCGAAGCCCGCGCTGCTGCCGGTTACGGCTTCTGGCAGCTGGCCTATGGCTCCACCGGC 21140 || ||||| || || || | || || |||||||||||| ||||||||||||| ||||| Sbjct 176 GCGGAAGCGCGGGCAGCGGGGGGCTATGGCTTCTGGCAGATGGCCTATGGCTCGACCGGT 235 Query 21141 AC 21142 || Sbjct 236 AC 237 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 116919608468400