Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq2641 102 8e-17 seq51865 98.7 9e-16 seq29103 91.5 1e-13 >seq2641 Length=263 Score = 102 bits (112), Expect = 8e-17 Identities = 147/206 (71%), Gaps = 1/206 (0%) Strand=Plus/Minus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 |||||| || | ||| | |||| ||| | ||||| ||||| ||||| ||||||||| | Sbjct 247 TCCACCACGAAGTCGAAGAACCAGATGCAGAGTAGATTCTTTCTGAATGTTGTAATCGGC 188 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 | || ||| ||| || | ||| || ||||| |||| | ||| || |||||||| || Sbjct 187 AAGGGTTCGACCATCTTCCAACTGCTTACCAGCAAAGATGAGTCGTTGTTGATCGGGGGG 128 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || |||||||||| | ||| ||| |||| | |||| || |||| | || || Sbjct 127 AATACCCTCCTTGT-CTTGAATTTGGTTTTGACATTGTCGATAGTATCCGAAGATTCAAC 69 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCA 127091 ||| | ||| | || |||||||||| Sbjct 68 TTCAAGGGTGATAGTCTTGCCGGTCA 43 >seq51865 Length=821 Score = 98.7 bits (108), Expect = 9e-16 Identities = 313/480 (65%), Gaps = 24/480 (5%) Strand=Plus/Plus Query 47070 CCCTGCGTGCGCAGAAAGGCCGAGTGGGCCATGAAGTACAT-TGAAAACGAAAACGTCAC 47128 |||||| | |||| |||||| || |||||| || || || | || ||||| ||| Sbjct 354 CCCTGCATCCGCAAAAAGGCTGACTGGGCCCTGCGGTGGATCTCCGGACAAAAACTCCAC 413 Query 47129 TCTGGCCGAACGTTTGATCGCTTTCGCCATCGTCGAGGGCGTCTTCTTCTCGGGCAGCTT 47188 | ||| | ||| || | || ||||| || || || |||||||| ||| || Sbjct 414 CTTTGCCAACCGTCTGGTAGCGTTCGCTGCGGTGGAAGGAATCTTCTTCAGTGGCTCTTT 473 Query 47189 TGCGGCGATATTTTACATGAAAACCAAAGGAGTTATGCCCGGCCTCACGTTTAGCAACGA 47248 || | || || | | || | || | |||||||||||||| ||| |||||| Sbjct 474 CGCCTCCATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCCGGCCTCACCTTTTCCAACGA 533 Query 47249 GCTAATCTCGAGAGACGAAGGCCTGCACACCAACTTTGCCTG---TCTCTACT------A 47299 ||| |||||| | ||||||||| |||||||| |||||||||| |||| || Sbjct 534 GCTCATCTCGCGTGACGAAGGCATGCACACCGACTTTGCCTGCCTGCTCTTCTCGCTCCT 593 Query 47300 CAACACTAGAGTCGATCAAAAGTTGGACGTGCCCACCGTCAGCGACATGTTTGCCGAAGC 47359 ||||| | | | || ||| |||| |||| | ||| | |||| || Sbjct 594 CAACA--ACCGCCCCTCCAAA----GACG------CCGTGCAAGCCATCATCACCGAGGC 641 Query 47360 CGTCGCCATTGAGATGGAGTTTTTCGCCGAGGCTCTGCCCGAATCTTTAGTGGGAATGAA 47419 ||||| || |||| |||||| | |||| || ||||| | | | || ||||| Sbjct 642 CGTCGAGATCGAGAAGGAGTTCCTGTCCGACGCCCTGCCTTGTGCGCTGCTCGGCATGAA 701 Query 47420 CGCGGAGATGATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTTCAGCTAAA 47479 ||| | ||| | ||||||| || |||||||||||||| ||||| | || | Sbjct 702 CGCCACCCTCATGTGCCAGTACATTGAGTTTGTCGCCGACCGGCTGCT-GCTCTCCCTCG 760 Query 47480 GTATCCCAAGAT-TTACCACACCGAGAATCCATTCGAGTTTATGAACAACATTTCGCTCG 47538 | | | | || | |||||| || || || || || |||||| | ||||| ||||||| Sbjct 761 GCAACACGAGGTACTACCACGCCACCAACCCTTTTGACTTTATGGAGAACATCTCGCTCG 820 >seq29103 Length=1863 Score = 91.5 bits (100), Expect = 1e-13 Identities = 155/221 (70%), Gaps = 3/221 (1%) Strand=Plus/Plus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTAT-CGTAGACTCTTTTTGAATATTGTAATCGC 126944 |||||| || | || | ||||| || | ||| ||||| |||||||| ||||| || Sbjct 1061 TCCACCTCGGAGACGAAGAACCAAGTGGACGCGTCGACTCCTTTTGAATGTTGTAGTCTG 1120 Query 126945 CCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAG 127004 | | ||||| || || ||||| || || || |||||| |||||||| || || | Sbjct 1121 CAAGAGTGCGGCCGTCCTCAAGCTGCTT-CCGGCA-AGATCAGGCGCTGCTGGTCCGGGG 1178 Query 127005 GTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGA 127064 | ||||||||||||||| ||| || ||||| | |||| ||||| | ||||| Sbjct 1179 GAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATCGTGTCGGAGGACTCGA 1238 Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 127105 | || | ||| | || ||||| ||||| || || || ||| Sbjct 1239 CCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAA 1279 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 474726328072000