Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_012635.1 Length=168394 Score E Sequences producing significant alignments: (Bits) Value seq33108 187 3e-42 seq31280 122 9e-23 seq34305 100 3e-16 seq49234 96.9 4e-15 >seq33108 Length=3479 Score = 187 bits (206), Expect = 3e-42 Identities = 151/183 (83%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 63141 TTACAAACTCTCAGTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGA 63200 ||| ||||| || ||||||||||| || || ||||| ||||| ||||| || ||||| || Sbjct 2968 TTATAAACTTTCCGTAAAGGTACGGGCAATGACGTCACGCTGTTGTTCAGGCGTCAGCGA 2909 Query 63201 GTTAAAGCGAACTGCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATG 63260 |||||||| || ||||| ||||| ||||| ||||||||||||||||| || || ||||| Sbjct 2908 ATTAAAGCGCACGGCATACCCGGAAACACGAATGGTCAGCTGCGGATACTTCTCAGGATG 2849 Query 63261 CTTAACTGCATCTTCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCACC 63320 || || || |||||||| |||||||| ||||| ||||||||||| | ||| || || || Sbjct 2848 TTTCACGGCGTCTTCCAGCGTTTCACGGCGCAGGACGTTAACGTTTAAGTGCTGCCCGCC 2789 Query 63321 TTC 63323 ||| Sbjct 2788 TTC 2786 >seq31280 Length=10079 Score = 122 bits (134), Expect = 9e-23 Identities = 203/291 (70%), Gaps = 2/291 (1%) Strand=Plus/Plus Query 140725 TTCAGTTGAACACCATAATCCATATGACGAATGCGGTTTTCTTCTACGCCTTTGTTATTT 140784 || || || ||||| || ||||| ||||| | |||||| |||| || || ||| ||| Sbjct 1342 TTGAGCTGCACACCGTAGTCCATGTGACGTACGCGGTTACCTTCCACACCACGGTTGTTT 1401 Query 140785 TTCAAAACAAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATA-AGCAGTAGCAGC 140843 |||| || | || |||| ||||||| |||||| || ||||| | ||| || || || Sbjct 1402 TTCAGGACTAACAGGCTTTCTACTTCCAGATGCCACATCGGATAGAACAGC-GTCGCTGC 1460 Query 140844 GCCGCCACGAATTCCACCCTGTGAGCATGATTTAACAGCAGTCTGAAAATGTTTCCAAAA 140903 ||||||||| | || ||||| || || ||||| || || ||||| || || || | || Sbjct 1461 GCCGCCACGGACGCCGCCCTGCGAACAGGATTTCACCGCTGTCTGGAAGTGCTTGTAGAA 1520 Query 140904 AGGAATAACACCAGTATGGCGTACTTCACCCATGCCAATCTTAGAACCTTCAGCACGAAT 140963 || ||| ||| |||||| ||||||| || |||| || || || || Sbjct 1521 CGGGATACAACCGGTATGGAAAGCTTCACCGCCGCGAATCGGGCTGCCCAGCGCGCGGAT 1580 Query 140964 CATACCAACGTTAATACCAATTCCAGCGCGTTTAGAGATATATTCAACAAT 141014 ||| ||||||||||||| || ||||||| || | |||| ||||| Sbjct 1581 ACGACCCGCGTTAATACCAATACCTGCGCGTTGTGAAACGTATTTCACAAT 1631 >seq34305 Length=2218 Score = 100 bits (110), Expect = 3e-16 Identities = 126/173 (73%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 63154 GTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGAGTTAAAGCGAACT 63213 ||||||||||| | || ||||| ||||||| || || || |||||||||||||| Sbjct 599 GTAAAGGTACGGGTAATCACGTCCTGCTGCTGCTCTTTGGTGAGCGAGTTAAAGCGAACG 658 Query 63214 GCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATGCTTAACTGCATCT 63273 ||||| || || || |||||||| | ||| |||||||| || || | | | ||| || Sbjct 659 GCATAGCCCGAAACGCGGATGGTTAACTGAGGATATTTCTCAGGGTTATCCATTGCGTCC 718 Query 63274 TCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCACCTTCAAT 63326 || |||| || || |||||||| ||||| || || || |||||||| Sbjct 719 ATCAACATTTCCCGGTTCATCACGTTAACATTCAGATGCTGGCCGCCTTCAAT 771 >seq49234 Length=879 Score = 96.9 bits (106), Expect = 4e-15 Identities = 155/216 (72%), Gaps = 5/216 (2%) Strand=Plus/Plus Query 65207 ATTGACGCTTTCGCAAAAATTCTAACTTATCGTAAAAGAACGTAACATGACCAGAACCTA 65266 |||| || ||| | ||| || ||| |||| || || || ||||||||||| | ||||| Sbjct 339 ATTGGCGTTTT-GTAAATATAATAATTTATTATAGAA-AATGTAACATGACCTGTACCTA 396 Query 65267 AAATAAACTCGGAAGATATTTTAAAATCTTTAACGCGCTTACC-GTTTGCCACATGCTTA 65325 || | | | | ||||||||||| || | || ||||| | ||| || |||||| Sbjct 397 AATGTAGGTAGTACTG-ATTTTAAAATCATTGATTCGTTTACCAGCTTG-TACGTGCTTA 454 Query 65326 CGAACTATACCAAAAACACGCGGCAATTCACGGTATTCTGCGATTAAATGTTGATCAGCA 65385 ||||| ||| || ||||| ||||||||||||||||| || || | |||||| ||||| Sbjct 455 CGAACAGCACCGAATACACGTGGCAATTCACGGTATTCAGCCATAAGATGTTGGTCAGCT 514 Query 65386 AGTTCAGATACTAAAGTCAAATTAATACGAGTCATT 65421 | ||| |||| | ||| ||||| |||||| Sbjct 515 AATTCTTGTACTGGTACGAGATTGATACGGGTCATT 550 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 537855338952000