Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_012741.1 Length=171451 Score E Sequences producing significant alignments: (Bits) Value seq31280 179 4e-40 seq49234 145 8e-30 seq50823 113 5e-20 >seq31280 Length=10079 Score = 179 bits (198), Expect = 4e-40 Identities = 288/411 (70%), Gaps = 2/411 (0%) Strand=Plus/Plus Query 142992 CATCAGGTCGTTTAACTGGATTCCGTAGTCCATATGACGAATACGGTTTTCATCGACACC 143051 ||||| | ||| | ||| | ||||||||||| ||||| | ||||| | || ||||| Sbjct 1332 CATCATTTTGTTGAGCTGCACACCGTAGTCCATGTGACGTACGCGGTTACCTTCCACACC 1391 Query 143052 TTTGTTGTTTTTCAGAACGAGCAGATTTTCAACTTCCAAATGCCAAATAGGATA-ATAAG 143110 |||||||||||| || | ||| |||| ||||||| |||||| || ||||| | || Sbjct 1392 ACGGTTGTTTTTCAGGACTAACAGGCTTTCTACTTCCAGATGCCACATCGGATAGAACAG 1451 Query 143111 CAGTAGCAGCGCCGCCACGGATTCCACCTTGTGAACATGATTTAACAGCAGTCTGGAAAT 143170 | || || ||||||||||||| || || || ||||| ||||| || || |||||||| | Sbjct 1452 C-GTCGCTGCGCCGCCACGGACGCCGCCCTGCGAACAGGATTTCACCGCTGTCTGGAAGT 1510 Query 143171 GTTTCCAGAATGGAATAACACCAGTATGTTTGACTTCACCCATGCCAATACGAGAACCTT 143230 | || |||| || ||| ||| ||||| ||||||| || ||| | || Sbjct 1511 GCTTGTAGAACGGGATACAACCGGTATGGAAAGCTTCACCGCCGCGAATCGGGCTGCCCA 1570 Query 143231 CAGCACGAATCATACCAACGTTAATACCAATACCTGCACGTTTAGAAATGTATTCAATTA 143290 || || || ||| ||||||||||||||||||| |||| |||| ||||| | | Sbjct 1571 GCGCGCGGATACGACCCGCGTTAATACCAATACCTGCGCGTTGTGAAACGTATTTCACAA 1630 Query 143291 TTGAGTTTGCAGTTTTGTTAATAGATTTCAGTGAGTCACCTGCTTCAATAACAACACAAG 143350 | | | | | || ||| || || | ||| ||| || |||||| | ||||| | Sbjct 1631 TAGCGCTGGAGGTCGCGTTGATGGAATCCAGGCTGTCGCCACATTCAATCAGGACACAGG 1690 Query 143351 AACTAAATTGACGGGTTGGAGTACGTGCACCAGCCATAATAGGAGTAGGCA 143401 | || || ||||||||||| ||||| | || | ||| || || || |||| Sbjct 1691 AGCTGAACTGACGGGTTGGCGTACGCACTCCCGACATGATTGGCGTCGGCA 1741 >seq49234 Length=879 Score = 145 bits (160), Expect = 8e-30 Identities = 167/216 (77%), Gaps = 9/216 (4%) Strand=Plus/Plus Query 58116 TTATCATAAAAGAATGTAACGTGGCCTGTACCAAGGATAAAAGTAGGGCTGATTTTAAAA 58175 |||| ||| || |||||||| || |||||||| | || | |||| |||||||||||| Sbjct 364 TTATTATAGAA-AATGTAACATGACCTGTACCTAA-ATGTAGGTAGTACTGATTTTAAAA 421 Query 58176 TCACGAACACGTTTACC-GTTAGCAACATGCTTACGAACTGCACCGAAAACACGTGGTAA 58234 ||| | |||||||| | | | || ||||||||||| |||||||| |||||||| || Sbjct 422 TCATTGATTCGTTTACCAGCTTG-TACGTGCTTACGAACAGCACCGAATACACGTGGCAA 480 Query 58235 TTCACGATATTCAGCCATTAAGTGTTGGTCAGCCAATTCAGATACTAAGGTA--AGGTTG 58292 |||||| ||||||||||| | ||||||||||| ||||| |||| |||| || ||| Sbjct 481 TTCACGGTATTCAGCCATAAGATGTTGGTCAGCTAATTCTTGTACT--GGTACGAGATTG 538 Query 58293 ATACGAGTCATTTTTAA-TCTCCTGTAGTTGATAGG 58327 ||||| |||||| || |||||| || |||||| Sbjct 539 ATACGGGTCATTCAAAATTCTCCTTTATAAGATAGG 574 >seq50823 Length=3276 Score = 113 bits (124), Expect = 5e-20 Identities = 143/193 (74%), Gaps = 3/193 (2%) Strand=Plus/Plus Query 58122 TAAAAGAATGTAACGTGGCCTGTACCAAGGATAAAAGTAGGGCTGATTTTAAAATCACGA 58181 ||||| || ||||| || ||||| ||||| ||| | | || |||||||||||| | Sbjct 128 TAAAAAAAGGTAACATGTCCTGTTCCAAGAATATAGCTTTTACTTATTTTAAAATCATTA 187 Query 58182 ACACGTTTACCGTTAGCAACATGCTTACGAACTGCACCGAAAACACGTGGTAATTCACGA 58241 | | ||| || | |||| || || | |||||||| || |||||||||||||||||| Sbjct 188 ATAT-TTTCCCAGCATCAACGTGTTTCCTTACTGCACCAAATACACGTGGTAATTCACGA 246 Query 58242 TATTCAGCCATTAAGTGTTGGTCAGCCAATT-CAGATACTAAGGTAAGGTTGATACGAGT 58300 ||||||||||| | ||||| || ||||||| | || | | ||| || || ||||| Sbjct 247 TATTCAGCCATCAGATGTTGATCGGCCAATTCCTGAACCGGAACTAA-ATTTATCCGAGT 305 Query 58301 CATTTTTAATCTC 58313 |||||| ||| || Sbjct 306 CATTTTAAATATC 318 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547621805868000