Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_012742.1 Length=44080 Score E Sequences producing significant alignments: (Bits) Value seq36111 100 8e-17 seq38026 96.9 1e-15 >seq36111 Length=5564 Score = 100 bits (110), Expect = 8e-17 Identities = 255/383 (67%), Gaps = 9/383 (2%) Strand=Plus/Minus Query 5193 TCTGCGTCTGGCGATCCTGCAGGCTCAGCTGGCTGAGTTCCCGGCGACCGGCATTGTGCT 5252 ||||||||| || || |||||||| ||| | || |||||||| | ||| ||| || Sbjct 2310 TCTGCGTCTCGCCATGCTGCAGGCACAGTTAGCACGTTTCCCGGCATCAGGCCATGTTCT 2251 Query 5253 GAACCCGGCGGATTGGGCTGGCATTGAGCTGATTAAGGATACGCAGGGCCGCTACATCTT 5312 | | | || ||||| |||||||||| ||| ||||||| ||| || |||||| | Sbjct 2250 GCATTTTACTGACTGGGCCAAAATTGAGCTGAGTAAAGATACGCTGGGGCGTTACATCCT 2191 Query 5313 GGGTAACCCT-CAGGG-TGTCTTGGCTCCCACGCTGTGGGGTCTGCCAGTTGTCTCGACT 5370 || || ||| || || | |||| || | |||||||||||||| || | || Sbjct 2190 GGCCAATCCTTCACAACTGACCA--CTCCTACTTTATGGGGTCTGCCAGTAGTGGCAACG 2133 Query 5371 CAGGC----CATGGCCGCAGGTCAGTTCCTCGTTGGCGCGTTTGATGCGGCTGCACAGAT 5426 | || || || | ||| | ||||| ||||||||| | | | ||| ||||| Sbjct 2132 GAAGCTGCTCAGTTCCTC-GGTAAATTCCTGACGGGCGCGTTTAACTCCGGTGCGCAGAT 2074 Query 5427 TTTCGATCGTTGGGAAGCGCGCGTGGAAGTGGCTACCGAGAATCAGGATGACTTTGTGAA 5486 ||| || || || || ||| | || | | ||| || ||||||||||||| ||| Sbjct 2073 TTTTGACCGCGAAGATGCAAACGTTGTGGTTTCCAGCGAAAACCAGGATGACTTTGAGAA 2014 Query 5487 AAACCTTGTCACCGTTCTGTGTGAAGAGCGTTTGGCATTGGCCATCTATAGGCCTGAGGC 5546 ||| | || | | | || ||||||||| | || |||| | ||| | ||||| || Sbjct 2013 GAACATGATCTCAATCCGCTGCGAAGAGCGTCTTGCTCTGGCGGTTTATCGTCCTGAAGC 1954 Query 5547 TCTGGTCAAGGGTGCCCTGACTG 5569 | || | || ||||||||| Sbjct 1953 GTTTGTGTATGGCTCCCTGACTG 1931 >seq38026 Length=5128 Score = 96.9 bits (106), Expect = 1e-15 Identities = 231/345 (67%), Gaps = 7/345 (2%) Strand=Plus/Plus Query 5193 TCTGCGTCTGGCGATCCTGCAGGCTCAGCTGGCTGAGTTCCCGGCGACCGGCATTGTGCT 5252 ||| |||||||| || |||||||| || |||||| ||||||||| |||| ||| || Sbjct 4526 TCTCCGTCTGGCAATGCTGCAGGCACAACTGGCTCGCTTCCCGGCGTCCGGTCATGTCCT 4585 Query 5253 GAACCCGGCGGATTGGGCTGGCATTGAGCTGATTAAGGATACGCAGGGCCGCTACATCTT 5312 || || ||||| |||||||||| ||| ||| ||| ||||||||| ||| | Sbjct 4586 TCACTTCATTGACTGGGCGAAGATTGAGCTGACTAAAGATTCGCTGGGCCGCTATATCCT 4645 Query 5313 GGGTAACCCTCAGGGTGTCTTG--GCTCCCACGCTGTGGGGTCTGCCAGTTGTCTCGACT 5370 || ||| || || | |||| | ||| || ||||||| ||||| || || | || Sbjct 4646 GGCTAATCC--AGCGGCGCTTGCGGGTCCAACATTGTGGGGCCTGCCGGTAGTGGCTACA 4703 Query 5371 CAGGCCATGGCCG--CAGG-TCAGTTCCTCGTTGGCGCGTTTGATGCGGCTGCACAGATT 5427 | || || |||| | | ||||| || || || |||| | || |||||| Sbjct 4704 GAAGCATCTGCTTTCCAGGGTAAATTCCTGACCGGTGCCTTCAATGCAGGCGCCCAGATT 4763 Query 5428 TTCGATCGTTGGGAAGCGCGCGTGGAAGTGGCTACCGAGAATCAGGATGACTTTGTGAAA 5487 |||||||| || || ||| | | | || || || |||||||||| |||| Sbjct 4764 TTCGATCGCGAAGATGCCAACGTTGTTATCTCAACGGAAAACGGCGATGACTTTGAGAAA 4823 Query 5488 AACCTTGTCACCGTTCTGTGTGAAGAGCGTTTGGCATTGGCCATC 5532 ||| | || | ||| || ||||| ||| |||| ||||| || Sbjct 4824 AACATGATCTCAATTCGTTGCGAAGAACGTCTGGCGCTGGCCGTC 4868 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 140716330441200