Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_012743.2 Length=62715 Score E Sequences producing significant alignments: (Bits) Value seq16638 114 5e-21 seq40890 109 2e-19 seq26088 95.1 5e-15 seq99059 84.2 9e-12 seq45329 82.4 3e-11 seq23889 82.4 3e-11 >seq16638 Length=4153 Score = 114 bits (126), Expect = 5e-21 Identities = 141/193 (73%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 9228 AAGGACAAGGCGAGCGGCGAGTTCAAGGAAGTGACCGAGTGGCACCGCGTCGCTTTCTTC 9287 ||||||||| || ||| || |||| ||||| ||||||||||| | |||||| Sbjct 4149 AAGGACAAGCAGACCGGTCAGCAGCAGGACCGCACCGAATGGCACCGCGTGGTGTTCTTC 4090 Query 9288 GGCCGCCTCGCCGAGATCGTCGACGAGCACCTTCGCAAGGGCGCATCGGTCTACATCGAG 9347 || || ||||||||||||| || |||| || | ||||||||| | |||||| ||||| Sbjct 4089 GGTCGTCTCGCCGAGATCGCCGGCGAGTACATCCGCAAGGGCTCCCAGGTCTATGTCGAG 4030 Query 9348 GGGCGCATCAAGACGCGGAAGTGGCAGGATCAATCCGGCCAGGATCGCTACACGACCGAG 9407 || | || || || ||||||| || ||| |||||||||||||| ||||| Sbjct 4029 GGCACTCTGCGTACCCGCAAATGGCAGGGCCAGGACGGTCAGGATCGCTACACCACCGAA 3970 Query 9408 ATCGTCGCCGACA 9420 ||||| | ||||| Sbjct 3969 ATCGTGGTCGACA 3957 >seq40890 Length=365 Score = 109 bits (120), Expect = 2e-19 Identities = 165/230 (72%), Gaps = 5/230 (2%) Strand=Plus/Minus Query 9121 TCAACAAAGTCATCCTCGTCGGCAATCTCGGCGCCGACCCGGAAACCCGCTACCTCCCGA 9180 ||||||||||||||||||||||||| |||||| ||| || || ||| ||| || | Sbjct 238 TCAACAAAGTCATCCTCGTCGGCAACCTCGGCAACGATCCCGACACCAAGTACACCCAGG 179 Query 9181 GCGGCGACGCAATCTCCAATATCCGTCTCGCGACGACCGATCGCTA-CAAGGACAAGGCG 9239 |||| || ||| || ||| | || || || ||| | || |||||| ||| Sbjct 178 CCGGCATGGCCATCACCCGGATCAGCCTGGCCACCACC-AGCGTGCGCAAGGATC--GCG 122 Query 9240 AGCGGCGAGTTCAAGGAAGTGACCGAGTGGCACCGCGTCGCTTTCTTCGGCCGCCTCGCC 9299 | |||| | ||||| ||||||||||||||||||| |||||||| || | | Sbjct 121 A-CGGCAACCAGCAGGAACGCACCGAGTGGCACCGCGTCGTGTTCTTCGGAAAGCTTGGC 63 Query 9300 GAGATCGTCGACGAGCACCTTCGCAAGGGCGCATCGGTCTACATCGAGGG 9349 ||||||| || |||| |||| ||||| ||| ||||||||| |||| || Sbjct 62 GAGATCGCCGGCGAGTACCTGCGCAAAGGCAGCTCGGTCTACGTCGAAGG 13 >seq26088 Length=506 Score = 95.1 bits (104), Expect = 5e-15 Identities = 227/339 (67%), Gaps = 6/339 (2%) Strand=Plus/Plus Query 2807 AACGACCTCGTGCTGCTGTCCGGCGTGTTCGACG-TCGCGAACCCGGCATGGGGCATCAA 2865 || |||||| || ||| | | |||| | | || ||||| ||||| || ||| | | Sbjct 168 AATGACCTCTCGCACCTGGCAGCCGTGCT-GTCGATCGCGCGGCCGGCCTGAGGCTACGA 226 Query 2866 GCTCAACCCGCAGGAGATGGAGGACGCCAAAGCCGTCTGCCG--GAAGATGGGGCTCATC 2923 | || ||||||| | |||| || || |||| || | ||||||||| | || Sbjct 227 GATCGACCCGCACGCCATGGCCGATGCTC--GCCGGGTGTTGAAGAAGATGGGCATGGTC 284 Query 2924 GAAAAGGCCGAGGAGCGCACGCGCGTGCCGACGATGGACGAGCTCGAGAAGCTGATGGTC 2983 ||| | |||||||| || |||| | | | ||||| || |||||||| Sbjct 285 AGCAAGAGCAAGGAGCGCGATCGGCGGCCGGAGCTCCAGGAGCTGGACCTGCTGATGGAG 344 Query 2984 TACTTCCACGACATGGCGCGCCGGCGGAAGTGGGCGACGCCGATGGTCAAGATCATCGCC 3043 | ||| ||| ||| ||| || ||| | | ||| ||| |||| | ||||| Sbjct 345 CATTTCTTCGAGATGCAGCGGCGCCGGCCGGCGTCGATCAACATGCCCAAGGTGATCGCT 404 Query 3044 TTCGCGATCTTCTCGACGCGGCGCCAGGAGGAGATCACGGCGATCCGCTGGGAGGACCTG 3103 ||||| |||||||| || || |||||||||||||||||| |||||||||||| |||||| Sbjct 405 TTCGCCATCTTCTCCACCCGCCGCCAGGAGGAGATCACGCGGATCCGCTGGGACGACCTG 464 Query 3104 ACCGAGGGGGAGAGCACGCAGCTCGTGCGCGACGTGAAG 3142 ||| | | || ||| ||||||||| ||||| Sbjct 465 GACGAACGCCGGCAGGCGGTGCTGGTGCGCGACATGAAG 503 >seq99059 Length=767 Score = 84.2 bits (92), Expect = 9e-12 Identities = 127/176 (72%), Gaps = 6/176 (3%) Strand=Plus/Plus Query 3199 GGCGATCATCCGCTCGATGCCGCGCGACGGCGACCGCATCTTCCCCTACACGACG--GAC 3256 ||| || ||| |||||||||||||| |||| || ||||||||||||| ||| || Sbjct 578 GGCCATTGTCCAGTCGATGCCGCGCGAGTGCGAGCGGATCTTCCCCTACA--ACGGTGAT 635 Query 3257 GCGATCAGCGCGCAGTTCACGCGCGCATGCGACTGGCTCGAGATCGAGGACTTGCGCTTC 3316 | ||| |||| ||||| || || ||| | | || ||| | |||| | |||||| Sbjct 636 TCCATCTCCGCGTCATTCACCCGGGCCTGCCAGTTCCTGGAGCTGCAGGATCTACGCTTC 695 Query 3317 CACGACCTGCGCCGGGCCGGCGTGACGCGCCTATTCGAGATGGGCTGGAACATTCC 3372 ||||| ||||||| | || |||| || || ||||||||| |||| |||||| Sbjct 696 CACGATCTGCGCCACGATGGGGTGAGCCGGCT-GTCGAGATGGACTGG-GCATTCC 749 >seq45329 Length=597 Score = 82.4 bits (90), Expect = 3e-11 Identities = 89/118 (75%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 9119 CGTCAACAAAGTCATCCTCGTCGGCAATCTCGGCGCCGACCCGGAAACCCGCTACCTCCC 9178 |||||| ||||||||||||||||||||| ||||||||| || |||||||| ||| | || Sbjct 122 CGTCAATAAAGTCATCCTCGTCGGCAATGCCGGCGCCGATCCCGAAACCCGTTACATGCC 63 Query 9179 GAGCGGCGACGCAATCTCCAATATCCGTCTCGCGACGACCGATCGCTACAAGGACAAG 9236 | |||| | || | |||| || || || || | ||| ||| ||||||||| Sbjct 62 CAACGGCAATGCGGTGACCAACGTCACCCTGGCCACCAGCGAGAGCTGGAAGGACAAG 5 >seq23889 Length=1023 Score = 82.4 bits (90), Expect = 3e-11 Identities = 89/118 (75%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 9119 CGTCAACAAAGTCATCCTCGTCGGCAATCTCGGCGCCGACCCGGAAACCCGCTACCTCCC 9178 |||||| ||||||||||||||||||||| ||||||||| || |||||||| ||| | || Sbjct 902 CGTCAATAAAGTCATCCTCGTCGGCAATGCCGGCGCCGATCCCGAAACCCGTTACATGCC 961 Query 9179 GAGCGGCGACGCAATCTCCAATATCCGTCTCGCGACGACCGATCGCTACAAGGACAAG 9236 | |||| | || | |||| || || || || | ||| ||| ||||||||| Sbjct 962 CAACGGCAATGCGGTGACCAACGTCACCCTGGCCACCAGCGAAAGCTGGAAGGACAAG 1019 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 200244699370800