Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_012753.1 Length=37184 Score E Sequences producing significant alignments: (Bits) Value seq115158 856 0.0 seq29199 329 8e-86 seq123790 300 4e-77 seq32415 203 8e-48 seq125381 125 2e-24 >seq115158 Length=1188 Score = 856 bits (948), Expect = 0.0 Identities = 685/822 (83%), Gaps = 4/822 (0%) Strand=Plus/Plus Query 28691 AAATGATTAATTTAAAATTACGATTACAAAACAAAGCTACATTAGTAGCTCTCATTTCAG 28750 ||||||||||||| |||||||| || ||||| ||| ||||| |||||||||| || |||| Sbjct 285 AAATGATTAATTTTAAATTACGTTTGCAAAATAAAACTACACTAGTAGCTCTTATCTCAG 344 Query 28751 CAGTGTTCTTGATGCTGCAACAATTCGGGCTTCACATTCCGACCAACATTCAAGAGGGAG 28810 |||| ||| | ||| |||||||||| |||||| | ||||| ||| || ||||| | | Sbjct 345 CAGTATTCCTTATGTTGCAACAATTAGGGCTTGAAATTCCACACAATATCCAAGACGCTG 404 Query 28811 TAAATACCTTTGTGGGAATTTTGGTTATTCTCGGAATCGTTACCGACCCAACAACTAAAG 28870 ||||||| || | | |||||||||||| ||||||||||||||||||||||| ||||| | Sbjct 405 TAAATACATTCATTGCAATTTTGGTTATCCTCGGAATCGTTACCGACCCAACCACTAAGG 464 Query 28871 GAATCGGTGACAGTGAACGAGCATTGAACTATGACGAACCACTAGACGACAAGAAAGGAA 28930 | || | ||||| ||||||||||||| |||||| ||||||||||||| ||| |||||| Sbjct 465 GGATTGCAGACAGCGAACGAGCATTGAGCTATGAACAACCACTAGACGAAAAGGAAGGAA 524 Query 28931 AATAATATGAGCG-TACAACAAGCTATTGTAAATTGGTTTGTTAACCATCGAGGTAAATT 28989 |||| |||||||| |||||||| ||||||||||||||||||||||||||||||| ||||| Sbjct 525 AATAGTATGAGCGATACAACAATCTATTGTAAATTGGTTTGTTAACCATCGAGGCAAATT 584 Query 28990 GACCTATTCAATGTATGGTTCACGTAACGGTTCAGATGGCACCGCTGACTGTTCTGGTTC 29049 |||||||||||||||||| ||||| ||||| |||| || || |||||||| |||||||| Sbjct 585 GACCTATTCAATGTATGGGTCACGCAACGGAGCAGACGGTACAGCTGACTGCTCTGGTTC 644 Query 29050 GATTTCACAAGCCTTAAAAGAAGCTGGTATTGGTATTCAAGGTTTGCCATCAACAGTAAC 29109 || ||||||||| ||||||||||||||||||||||||||||| | ||||| || || || Sbjct 645 CATATCACAAGCCCTAAAAGAAGCTGGTATTGGTATTCAAGGTCTACCATCTACTGTTAC 704 Query 29110 CCTTGGTCAACAACTAGCAAACAACGGATTCTATCGTGTAAGTATTAACCAAGATTGGGA 29169 || ||||||||||| || || || ||||||||||| ||||||||||| ||||||||||| Sbjct 705 ACTAGGTCAACAACTTGCCAAAAATGGATTCTATCGAGTAAGTATTAATCAAGATTGGGA 764 Query 29170 CGCGTTAACTGGTGATATAGTAATGATGTCATGGGGTGCTGACATGTCGCAATCAGGTGG 29229 || || || || ||||| || | |||||||||||| |||| ||||| ||| || || Sbjct 765 TGCTTTGACAGGCGATATTGTGTTAATGTCATGGGGTTCTGATATGTCCACATCTGGCGG 824 Query 29230 TGCAGGTGGACACGTTGGGGTCATGATGGATAGCGTAAACTTCATTAGTTGCGATTACTC 29289 || || || |||||||| |||||||||||| | |||| |||||||||||||| || Sbjct 825 AGCTGGAGGGCACGTTGGTGTCATGATGGATGCTACATACTTTATTAGTTGCGATTATTC 884 Query 29290 AACCCAAGGAGCAGTAGGACAAGCTATCAATACATACCCTTGGAATGACTACTATGCAGC 29349 ||| ||||| ||| || |||||||||||||| ||||| |||||||||||||||||||| Sbjct 885 AACTCAAGGGGCACCTGGGCAAGCTATCAATACTTACCCGTGGAATGACTACTATGCAGC 944 Query 29350 TAATAAGCCTGCGTATATTGAAGTGTGGCGTTATTTCGATAATGCACCGCAGACTAACAA 29409 || |||||||| ||||| || ||||||||||||| || | ||||||||| || ||||| Sbjct 945 GAACAAGCCTGCATATATCGAGGTGTGGCGTTATTCTGACACTGCACCGCAAACCAACAA 1004 Query 29410 CCTAGCAAATACGTCA--TTAAAACCACAAGAGAAGGCATACTATGAAGCTAATGAAGTA 29467 || ||| ||||| || | | ||||||| | ||||| |||||||||||||||||||| Sbjct 1005 CCAAGCTAATACAGCAGCTAGACACCACAACAAAAGGCTTACTATGAAGCTAATGAAGTT 1064 Query 29468 CAATTTGTTAAT-GGTATTTATCAGATTAAATGTGATTATTT 29508 ||||| |||||| || |||| ||||| |||||||| ||||| Sbjct 1065 CAATTCGTTAATGGGAATTTGGCAGATCAAATGTGACTATTT 1106 >seq29199 Length=407 Score = 329 bits (364), Expect = 8e-86 Identities = 313/399 (78%), Gaps = 1/399 (0%) Strand=Plus/Plus Query 823 TATGAGTTTAGAGCAAACAGCGAAACAGATGCGACAGCTGTATATGACAACTAGCGATGT 882 ||||| |||||| |||||||| | ||||||||||||||| |||||||| ||| | || Sbjct 1 TATGAATTTAGATCAAACAGCTAGACAGATGCGACAGCTATATATGACCACTGCCAATAA 60 Query 883 ATACTGCGACAAGCATAATCGAAACTATGTCACAATTAAGTTTCCTAACTCACAGCCTTA 942 ||||||||| ||||||||||||||||| ||||| ||| || | || ||| |||| || Sbjct 61 ATACTGCGAGAAGCATAATCGAAACTACGTCACTATTCAGCTACCAAACAGCAAGCCATA 120 Query 943 CACAGTTTGCGAACTGTGTCATCGTGAGGAGCAAGAACGAATGAATTCTATCAAAGCGCA 1002 ||| || || || ||| |||||||| |||||||| ||| ||||||||| ||||| || Sbjct 121 CACTGTATGTGAGACGTGCCATCGTGAAGAGCAAGAGCGACAGAATTCTATTAAAGCACA 180 Query 1003 AGAACAGTATGAGCGTGAGCAAGAACAAAAACGCTTATACTTTCTAAAAGATTTTAGTCT 1062 |||||||| ||||||||||||||| |||||||||||||||||||| |||||||| || | Sbjct 181 AGAACAGTTTGAGCGTGAGCAAGAGCAAAAACGCTTATACTTTCTCAAAGATTTCAGCTT 240 Query 1063 TCTTGATGACGATTTAAAAAGTGCCACTTTTGAGAATTATAAGGCATTAACCAGAGAGCA 1122 | ||||| ||||| ||||||| | ||||| | || | || | |||| |||||| Sbjct 241 GATGGATGATGATTT-GAAAGTGCTAGCTTTGAAACCTACCATGCTGTTACCAAAGAGCA 299 Query 1123 GAAAGAAGACCTTAAAAACGTTAGAAGTCAGCTTAAAGGTTATCTTGACGGTCAAGAATA 1182 || |||||| | || || ||| ||||||| || | ||| || | ||||| || || || Sbjct 300 AAAGGAAGACTTGAAGAATGTTCGAAGTCAACTCAGAGGATACTTAGACGGACAGGATTA 359 Query 1183 CAATATCGTTCTAATCGGTAACACTGGAGTAGGTAAGAG 1221 ||| || |||||||| ||| |||| || || || ||||| Sbjct 360 CAACATAGTTCTAATAGGTGACACGGGTGTCGGCAAGAG 398 >seq123790 Length=336 Score = 300 bits (332), Expect = 4e-77 Identities = 224/261 (86%), Gaps = 1/261 (0%) Strand=Plus/Plus Query 8321 GCAATCAACACAGTATATACAGAGATTGGCGTTTTAACGCCTAGAAAAGTGATACAACTA 8380 ||||| ||||| ||||||||||| |||||| |||||| ||| | || || || ||| || Sbjct 1 GCAATTAACACTGTATATACAGAAATTGGCAGTTTAACACCTCGCAAGGTAATCCAATTA 60 Query 8381 GAAGGACTTCTTTCTAGAGAATTATTTGGAAAAATAGCTAAGTACGTCTTTAATAAGTAT 8440 || || ||||| |||||||| |||| || || ||||| ||||||||||||||||||||| Sbjct 61 GAGGGTCTTCTGTCTAGAGAGCTATTCGGTAAGATAGCGAAGTACGTCTTTAATAAGTAT 120 Query 8441 GAATGGCCAGAAAGCCTAGATAGTGAAGTTGATCGAATTTATTTAGAATATCGCACTAAA 8500 ||||||||||||||||||||| | ||||||| |||| ||||||||||||||||||||| Sbjct 121 GAATGGCCAGAAAGCCTAGAT-GAAGAGTTGATAGAATCTATTTAGAATATCGCACTAAA 179 Query 8501 GGTGATATAGGTCGTGATAAAGAAAGTGTTAAACGTACACTATATAAAGCGATTGCTATG 8560 ||| || |||||||||||||||||||||||||||| ||||||||||||||||| ||||| Sbjct 180 GGTAATCTAGGTCGTGATAAAGAAAGTGTTAAACGCACACTATATAAAGCGATGTCTATG 239 Query 8561 GGATTGTAGTGGTTCGAATCC 8581 || |||| ||||||| ||| Sbjct 240 GGCTTGTGAGGGTTCGACTCC 260 Score = 134 bits (148), Expect = 3e-27 Identities = 89/98 (91%), Gaps = 2/98 (2%) Strand=Plus/Plus Query 8668 GCGTGCGTGGGTTCGACTCCCTCGTTCGTTGTTAGTCTGTCGTGACTAGGTAACTTTTTT 8727 || || | |||||||||||||||| ||| ||||||||||||||||||||| || ||||| Sbjct 241 GCTTGTGAGGGTTCGACTCCCTCGCTCGCTGTTAGTCTGTCGTGACTAGGAAA--TTTTT 298 Query 8728 CGACACTCGTATCGCTGACAGACCGATACACAAACCCA 8765 ||||||||||||||||||||||||||||||||||||| Sbjct 299 TGACACTCGTATCGCTGACAGACCGATACACAAACCCA 336 >seq32415 Length=302 Score = 203 bits (224), Expect = 8e-48 Identities = 142/162 (88%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 1532 AAGACAGGACTTGGAACTACAAATGAACACGTTTATCAATTTAAAACACAGCAAGACAAG 1591 ||||||||||| ||||| || |||||||| ||||||||||||||||| | ||||||||| Sbjct 162 AAGACAGGACTGGGAACAACCAATGAACATGTTTATCAATTTAAAACTAAACAAGACAAG 103 Query 1592 AGGATGATGCTATGACAGAAACAGAAGTTAAACTAAAGCTCTTTGAGGACTACGAGAGCA 1651 ||||||||| |||||| ||||||||||| ||| |||||||||||||||||| ||| ||| Sbjct 102 AGGATGATGTTATGACTGAAACAGAAGTAAAAACAAAGCTCTTTGAGGACTATGAGCGCA 43 Query 1652 TTCATGGTCTTGTAGTATCAGAAGGGCACAAACAGAAAATGA 1693 ||||||| |||||| | ||| ||| |||||| |||||||||| Sbjct 42 TTCATGGCCTTGTATTCTCACAAGAGCACAAGCAGAAAATGA 1 >seq125381 Length=275 Score = 125 bits (138), Expect = 2e-24 Identities = 193/274 (70%), Gaps = 1/274 (0%) Strand=Plus/Minus Query 8022 TTGACAACGTAGCCAAAGAGAGATCTAAGATGTCGCCTGTGACGTTGAACGACATGAGAG 8081 |||| ||||| | |||||| | || || | || ||| || ||| |||| ||||| | Sbjct 273 TTGATAACGTGGTTAAAGAGCGTTCGAAC-TATCACCTTCAACATTGGACGATATGAGTG 215 Query 8082 AATATCTTACGGATGGGCTGGCAAACGACATAGAAGAGTATTTACTAGAGAATTACACTA 8141 | ||||||||| | || || | || ||| || ||||||| | |||||| || || Sbjct 214 AGTATCTTACGAACGGCCTAGTGAATGACTTACGAGAGTATCTGGCAGAGAACTATTCTG 155 Query 8142 CTAGATGCATGAAAGGTCGACCAGATACCGACAAAGCTAACGCAGGACTTACAAGAGAGC 8201 ||| | | | | |||||| | || ||||||||||| || || || | || | Sbjct 154 ACAGAAGTGGGTCATCTAAGCCAGATGCTGATAAAGCTAACGCTGGGCTGACTAAGGAAC 95 Query 8202 TTTTCCTTCAATATCGCAAGGAAATACAAGCGTTAAGAGCAGCACACCCTAACAATATGG 8261 |||||| | ||| |||||||| ||| |||||||||||||||||||||| || | Sbjct 94 TTTTCCGAGAGCTTCGAAAGGAAATCGAAGAGTTAAGAGCAGCACACCCTAACCGTAACG 35 Query 8262 CGAACTATATCATGGAAGTAAAAGGGTGCTCAAA 8295 | | ||| | |||||||| ||||| |||||||| Sbjct 34 CAGAATATGTTATGGAAGTGAAAGGATGCTCAAA 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 118683275295600