Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq57763 143 3e-29 seq97857 120 4e-22 seq41695 114 2e-20 seq40057 109 7e-19 seq104936 96.9 4e-15 seq19335 93.3 5e-14 seq55708 91.5 2e-13 seq36755 84.2 3e-11 >seq57763 Length=521 Score = 143 bits (158), Expect = 3e-29 Identities = 243/346 (70%), Gaps = 11/346 (3%) Strand=Plus/Minus Query 10441 TATCAAGCATCTTCCTCGGAGATGTTTGGTAAAGTTAGGGAATCCCCACAAAATGAGGAG 10500 || || || ||| ||||||||||||||||||| ||| |||| |||||| || ||| Sbjct 438 TACCAGGCCTCTACCTCGGAGATGTTTGGTAAGGTTCAGGAAATCCCACAGAAAGAGTCA 379 Query 10501 ACGCCCTTCTATCCACG-ATCCGTCTATGGCGTCTCAAAGGTTGCGGCACATTGGCTCGT 10559 |||||||||||||| || | | | ||||| || |||| | || || ||| | Sbjct 378 ACGCCCTTCTATCCGCGTAGTCCT-TATGGTGTGGCAAAACTCTATGCGCACTGGATGAC 320 Query 10560 GAAGAATTATCGCGAATCCTATGGTCTCTTTGTGTGCTCCGGTATTCTCTTCAACCACGA 10619 || || ||||| || ||||||||| | |||| |||||||| ||||||||||| || || Sbjct 319 GATAAACTATCGTGAGTCCTATGGTATTTTTGCCTGCTCCGGGATTCTCTTCAATCATGA 260 Query 10620 GTCACCCCGTCGTGGCCCGGATTTCGTGACAAAGAAGATCACCGAT---GGTATCAA-AC 10675 || |||| ||| |||| || ||||| || || || |||||| | | ||| | Sbjct 259 ATCGCCCCTTCGCGGCCGTGAATTCGTCACGCGAAAAATTACCGATACCGTTGCCAAGAT 200 Query 10676 AAATCGTGGCGGGTGAGAGGGAGTTCATTGAATTGGGGAACCTCAACGCCGAGAGGGACT 10735 || | |||| || | || || | || | || || ||| ||||| || |||| | Sbjct 199 CAAACTTGGC----AAGGCGCAGGTCCTGGAGCTAGGAAATCTCGACGCCAAGCGGGATT 144 Query 10736 GGGGACACGCCAAGGACTATGTTGAAGCCATGTGGCTCGTACTCCA 10781 |||| | |||||||| || || || | |||||||| | | ||||| Sbjct 143 GGGG-CTTGCCAAGGAGTACGTAGAGGGCATGTGGCGCATGCTCCA 99 >seq97857 Length=911 Score = 120 bits (132), Expect = 4e-22 Identities = 355/540 (66%), Gaps = 7/540 (1%) Strand=Plus/Plus Query 116356 GTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAA-CTGCGAGTCTCTTCATT 116414 || ||||||| || | ||| |||||||| | | ||||||| || || | || | | Sbjct 235 GTAACAACCTGGGTAACTTCGTGAAGCTTCTTGAAATCAAATTCTCCGCG-CTTGTAGTC 293 Query 116415 GACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGT 116474 ||| | || || || | || |||| ||||| |||| |||||| | || Sbjct 294 GACGAAGGATGGCAGTGCTAGAGAGGCCAAGTTACAGACAGCAACCTCATCTGGGGCGGT 353 Query 116475 GTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATT 116534 |||||| | ||| || || || || || ||||| || ||||| | ||||| || || Sbjct 354 GTACTCAACAATCTCAGTGCATAAGTTCGAACTGCGGATAGTGCCGAGATTCTTCTGGTT 413 Query 116535 TGACTTTGTG-TTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGG 116593 ||||| | || || || |||||||| ||||| | || | || ||||| ||||| | Sbjct 414 G--CTTTGCGGTTGCAAGCGTCCTTGTAAAGCATGAAGGGATTACCAGTCTCAGTTTGAG 471 Query 116594 ACTTGAGAATAGCCTTCCATACATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCT 116653 || ||| || || | | | | || | ||| | || || | || || | Sbjct 472 CCTCGAGGATGGCATACGAG-CTTCTG-GGCGCGAACGGTCTCACGACCTTTGTTCTTTT 529 Query 116654 CCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGCCTCTGAGAGCCCTGGTG 116713 ||| || || |||||||||||||||||| ||||| | || | ||| || || Sbjct 530 TCTCATAACTTTCGTAGAGGGCCTCAAACTCATCACCGTAGACGTCCGCGAGACCAGGAC 589 Query 116714 CCTTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGT 116773 || | ||||| | |||| ||| | ||| ||| | || |||||||||||||| | Sbjct 590 ACTCGTTGGGACACATCAGAGTCCACTCCCCATTCTCTTGGACACGCTTCATGAAGAGAT 649 Query 116774 CTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGA 116833 | |||||||| || || |||| | || ||| |||| |||| || | || || || Sbjct 650 CCGGGATCCACAGGGCGTAGAATAAGTCGCGAGCGCGAACTTCCTCTTTGCCATGGTTCT 709 Query 116834 GACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTG 116893 ||| | ||||| ||| | | ||||| |||||||| || || ||||| | |||| || Sbjct 710 TACGAAGGTCCAAGAAGCCAAATATATCGGCGTGCCATGGCTCGAGGTAGATTGCGAATG 769 >seq41695 Length=397 Score = 114 bits (126), Expect = 2e-20 Identities = 116/151 (77%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 127530 GGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGAC 127589 |||| || || || || || ||||| || |||||||||||| | || || ||||| | || Sbjct 129 GGTGCAGCCCTTCATCGCGCGAGATAAGCTCATTCGAGAAGGAAAGGCCCGGCATCATAC 188 Query 127590 CCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACAC 127649 |||| ||||||| |||| | |||| || || || || |||||||| |||||||| || Sbjct 189 CCCGTTTCTTCAGCCAGTAGATCGAGCAGAACGATCCCGAGAAGAAAATCCCCTCAACGA 248 Query 127650 ACGCGAACGCAAATAGACGCTCGGCAAAGGA 127680 ||| ||||||| || |||||||| || || Sbjct 249 CCGCAAACGCAATCAGCCGCTCGGCGAATGA 279 >seq40057 Length=838 Score = 109 bits (120), Expect = 7e-19 Identities = 225/332 (68%), Gaps = 2/332 (1%) Strand=Plus/Plus Query 10441 TATCAAGCATCTTCCTCGGAGATGTTTGGTAAAGTT-AGGGAATCCCCACAAAATGAGGA 10499 ||||| ||||| | ||||||||||| ||||| || ||| || || || | ||| Sbjct 123 TATCAGGCATCCACTTCGGAGATGTTCGGTAAGGTCCAGGCGATTCCG-CAGATCGAGAG 181 Query 10500 GACGCCCTTCTATCCACGATCCGTCTATGGCGTCTCAAAGGTTGCGGCACATTGGCTCGT 10559 ||||| |||||||| || | ||| ||||| | ||| | || || ||| | Sbjct 182 CACGCCTTTCTATCCGCGCAGCCCCTACGGCGTGGCCAAGCTCTATGCCCACTGGATGAC 241 Query 10560 GAAGAATTATCGCGAATCCTATGGTCTCTTTGTGTGCTCCGGTATTCTCTTCAACCACGA 10619 | || || ||||| ||||| || |||| | | ||| ||||||||||||||||| Sbjct 242 CATCAACTACCGCGAGTCCTACGGCATCTTCGGCACCAGCGGCATTCTCTTCAACCACGA 301 Query 10620 GTCACCCCGTCGTGGCCCGGATTTCGTGACAAAGAAGATCACCGATGGTATCAAACAAAT 10679 || || | || |||| || |||||||| ||||||||||| | ||| | || Sbjct 302 ATCCCCGCTGCGCGGCCGCGAGTTCGTGACCCGCAAGATCACCGACAGCATCGCCAAGAT 361 Query 10680 CGTGGCGGGTGAGAGGGAGTTCATTGAATTGGGGAACCTCAACGCCGAGAGGGACTGGGG 10739 | | ||| || ||| | | || |||| |||||| ||||| || | |||||||| Sbjct 362 CAAGCTGGGCAAGCTGGACGTACTGGAGCTGGGCAACCTCGACGCCAAGCGCGACTGGGG 421 Query 10740 ACACGCCAAGGACTATGTTGAAGCCATGTGGC 10771 ||||||||| || || || | |||||||| Sbjct 422 CTTCGCCAAGGAATACGTCGAGGGCATGTGGC 453 >seq104936 Length=468 Score = 96.9 bits (106), Expect = 4e-15 Identities = 174/247 (70%), Gaps = 18/247 (7%) Strand=Plus/Minus Query 116064 CCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGG 116123 |||||| ||||| || || || ||||| || || || || | || |||||||| || Sbjct 292 CCACATGTCAAATTGAAGAATGCCTTGACTAGCAGGAGAGCC-TGGAAGGTCTCATAAGG 234 Query 116124 GCCCTCAACCTCCGCCAA----TTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCT 116179 || || | ||||| |||| ||| ||| | |||||||||||||| |||| Sbjct 233 ACCGTCCGTAACGGCCAACTCATTCGAAGC----CTCTAAGGCTGCGTGATACAGAGTCT 178 Query 116180 CAAAAATGCGAGCATTCATTGCCTTGGCCTC-GTCGGAATCAAACGCGAGACGGCACAAA 116238 | ||||| || ||||| | ||||||||| | || ||||||||| || | | |||| Sbjct 177 CGAAAATCTGAATATTCAGTTTCTTGGCCTCAGGCGAAATCAAACG---GAAGCCTCAAA 121 Query 116239 AT---AAATACATCCGCGAGACC-TTGGACACCGAGGCCAATTGGGCGATGTCTCATATT 116294 || ||| |||| || || || ||| || |||| |||||||| ||||| ||||| || Sbjct 120 ATTTGGAATGCATCGGCCAGCCCTTTGCACCCCGATTCCAATTGGACGATG-CTCATGTT 62 Query 116295 AGACTTT 116301 || ||| Sbjct 61 CGATTTT 55 >seq19335 Length=805 Score = 93.3 bits (102), Expect = 5e-14 Identities = 82/101 (81%), Gaps = 1/101 (1%) Strand=Plus/Plus Query 115903 TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 115962 || ||||| | |||||||||||||| ||||||||||| |||| ||| || | || || Sbjct 583 TATATGTTTGAGGTGTATGGCTCAAAACACTCATTGTTGCCCAGGATCTGAGACGTAGAC 642 Query 115963 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACC 116003 ||||| ||||||||||| |||||||| |||||||| ||| Sbjct 643 GCTGT-GGCATGGGTGCAATGAGAAGAGAGTTGCGGACACC 682 >seq55708 Length=2185 Score = 91.5 bits (100), Expect = 2e-13 Identities = 150/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 12858 CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATACACGGTT-G 12916 ||||| | ||| || ||||||||||| || ||||| ||||| ||||| ||||| | Sbjct 15 CCCGCGCCGCGATGGCGGCCGACGGCGTCGATCTCGTCGATGAAGACGATGCACGGCGCG 74 Query 12917 ATTTTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACAT 12976 | ||| || | || | || || || ||||| | |||| ||||| ||||| ||||| Sbjct 75 CTCTTCTTGGCCTGCT-CGAACATGTCGCGCACGCGGCTGGCGCCGACGCCCACGAACAT 133 Query 12977 CTCCACAAAATTGGCGGCGGAACATTG-GATGAAGGGGACGTTGGATTCACCCGCGATGG 13035 ||| || || | || | | || || | || ||| || ||| | ||||||||||| | Sbjct 134 CTCGACGAAGTCGGAGCCCGAG-ATGGTGAAGAACGGCACGCCCGCCTCACCCGCGATCG 192 Query 13036 CTCGGGCGAGGAGGGTCTTCCCCGTCCCTGG 13066 | ||||| || |||||||| || || || || Sbjct 193 CGCGGGCCAGCAGGGTCTTGCCGGTGCCGGG 223 >seq36755 Length=529 Score = 84.2 bits (92), Expect = 3e-11 Identities = 160/232 (69%), Gaps = 3/232 (1%) Strand=Plus/Plus Query 12875 ACCGACGGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCACGGGCAACTTC 12934 ||| | |||||| || |||||||| || | ||| || || ||| | || | | | Sbjct 108 ACCAATGGCGTCGATCTCGTCAATAAAGATGATGCAGGGCGCATTCTTGCGACCCTCGGC 167 Query 12935 AAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGC 12994 ||| | |||||| |||| | || |||||||||||||||||| ||||| || | || | | Sbjct 168 AAACAAATCTCGGACTCGCGAGGGACCGACACCCACAAACAT-TCCACGAATTCGGAGCC 226 Query 12995 G-GAACATTGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCT 13053 | || | || |||||| ||| || || || || | || ||||| || |||| Sbjct 227 GCTCACGCT-GAAGAAGGGCACGCCAGACTCTCCTGCTGTAGCCTTTGCGAGAAGTGTCT 285 Query 13054 TCCCCGTCCCTGGTTTCCCCGCGAGAAGGGCACCACGTGGGATCCTGGCACC 13105 | || || || || || ||||| | |||||||| |||||| |||| || Sbjct 286 TACCTGTACCGGGAGGTCCAGCGAGGATAGCACCACGAGGGATCTTGGCTCC 337 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 612507950148000