Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq8712 120 5e-22 seq97857 118 2e-21 seq10913 118 2e-21 seq19335 95.1 2e-14 seq41695 89.7 8e-13 >seq8712 Length=1748 Score = 120 bits (132), Expect = 5e-22 Identities = 465/718 (65%), Gaps = 16/718 (2%) Strand=Plus/Plus Query 205060 CTCGTATTTTGTGTACAGCGCCACAAAGTCAGAACCGTACACGTCCATCAGCCCTGGACA 205119 ||| || ||| ||| || ||| | || || |||||| ||| || || || || Sbjct 67 CTCATACTTTTCGTAGAGAGCCTCGAATTCCTCACCGTAGCAGTCAGCCAAGCCAGGGCA 126 Query 205120 TTTTTTGGGACACATCAGAGACCACAT-CTGATCGTCTTTCACCCTCTCCATAAACAGGT 205178 || ||||| ||||| |||| ||| | | || | || || | || ||| |||| | Sbjct 127 TTCGTTGGGGCACATGAGAGTCCAGTCGCCGTTCTT-TTCAACACGCTTCATGAACAAAT 185 Query 205179 CGCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTCGTCTCCAAGGTTCT 205238 || ||||| || | || || |||||||| | || | | || | || |||||| Sbjct 186 CGGGAATCCATAGAGCAAGGAAGAGGTCACGGGCACGAACTTCCTCCTTGCCGTGGTTCT 245 Query 205239 TTTTCAAGTCCAGCCAAGCCGCAATGTCGGCGTGCCACGGCTCTAACCACACGGCCATTG 205298 || || ||| || | | | ||| |||||||||||||| | | | || || | Sbjct 246 TTCGCAGGTCGAGGAACTCAAACACGTCTGCGTGCCACGGCTCCAGGTAAATGGGCAAAG 305 Query 205299 CGCCTGGCCTCTTGTTCCCACCCTGGTCCAC----CATGCGAGTCATCGCGTTGAAAACT 205354 | || || | |||||| ||||||||||| || | ||| || | |||||| || Sbjct 306 CACCAGGTCGCTTGTTGCCACCCTGGTCGACGTATCTGGCG-GTGTT---GTTGAACACG 361 Query 205355 CGCAGCATCGGCACCAGACCGTTGGCGGTCCCGTTCGTGCTGTTGATGGCCGAGCCTTCA 205414 || ||||| || || | ||||| | ||| ||||| |||| | ||| |||||| Sbjct 362 CGAAGCATGGGAACGACGCCGTTTGAGGTGCCGTTGGTGCCGGCAATGTACGAGCCAGTG 421 Query 205415 GCCCTCACGTTGGAGATGGCCGCGCCAATCCCGCCAGAACACTTGGCGATCTGGGCGCAC 205474 || | | | | || | | ||| || ||||||| ||||| |||| ||||||| Sbjct 422 GCACGAATGCGGTGGACGTTCAGGCCGATGCCGCCAGCCATCTTGGAGATCATGGCGCAC 481 Query 205475 TCTTGCAGAGTGCTGTAGATGCCTGCGATGGAATCGTCCGCCAGTGTCACCAGATAGCAC 205534 || || ||| ||||||||| ||||| || ||| |||| || || |||| Sbjct 482 GTCTG-AGGGTGTCATAGATGCCTTCGATGCTGTCATCCTTCAGT-CGACAAGGAAGCAG 539 Query 205535 GAAGCCAGCTTGGCAAAGTTG-GTGCCCGCGTGGAAGAGCGTGGGGCTGGCGTGGCTGAA 205593 || | |||| ||||| || | || || |||| ||| || ||||| ||||||| |||| Sbjct 540 GATGACAGC-TGGCATTGTGGCGTACCAGCGTTGAATAGTGTGGGCGAGGCGTGGGTGAA 598 Query 205594 GCGCTT-CTCGCTCAAACACCTGTAGGTCTCCAGCACGCTCTCCAGATCGAAGCCGTGAA 205652 | || |||| || ||||||| ||||| || | |||||| | | || | Sbjct 599 GAATTTGCTCG-ACATGAGGTTGTAGGTTTCCAGGACACGCTCCAGGTTGTCTCCCCAGA 657 Query 205653 TACCTATGGCGATCCTCATGAAGAGGTGTTGAGGTCTCTCCATCACCCTCTCGTTCACCT 205712 |||| | ||| | | ||| | | ||| || |||| ||| | | | | |||| | || Sbjct 658 TACCGACGGCAACACGCATAATCATGTGCTGTGGTCGCTCGACAATCTTGCCGTTGAGCT 717 Query 205713 TGAGCAGATAGGCTCTCTCTAGGGTGCGGATGGCAAAAAAGTTGAAGGTGTAGTCCCT 205770 |||| ||||||| || ||| || || || | |||| | | | || || |||| || Sbjct 718 TGAGGAGATAGGATCGCTCCAGAGTCTTGAAGCCAAAGTACTGGTAGTTGAAGTCTCT 775 >seq97857 Length=911 Score = 118 bits (130), Expect = 2e-21 Identities = 222/324 (69%), Gaps = 2/324 (1%) Strand=Plus/Plus Query 205072 GTACAGCGCCACAAAGTCAGAACCGTACACGTCCATCAGCCCTGGACATTTTTTGGGACA 205131 ||| || ||| |||| ||| |||||| |||||| || || ||||| | |||||||| Sbjct 543 GTAGAGGGCCTCAAACTCATCACCGTAGACGTCCGCGAGACCAGGACACTCGTTGGGACA 602 Query 205132 CATCAGAGACCACATCTGATCGTCTTTCACCCTCTCCATAAACAGGTCGCTGATCCACAG 205191 |||||||| |||| | || |||| || | || ||| || || || ||||||||| Sbjct 603 CATCAGAGTCCACTCCCCATTCTCTTGGACACGCTTCATGAAGAGATCCGGGATCCACAG 662 Query 205192 GCCGTAAAACAGATCACGGGCCCTAATTCCGTCGTCTCCAAGGTTCTTTTTCAAGTCCAG 205251 | |||| || | || || || | || | | || | ||| ||||||| | ||||| Sbjct 663 GGCGTAGAATAAGTCGCGAGCGCGAACTTCCTCTTTGCCATGGTTCTTACGAAGGTCCA- 721 Query 205252 CCAAGCCGCA-ATGTCGGCGTGCCACGGCTCTAACCACACGGCCATTGCGCCTGGCCTCT 205310 ||||| | || ||||||||||| ||||| | | | || | ||| || || | || Sbjct 722 AGAAGCCAAATATATCGGCGTGCCATGGCTCGAGGTAGATTGCGAATGCTCCGGGACGCT 781 Query 205311 TGTTCCCACCCTGGTCCACCATGCGAGTCATCGCGTTGAAAACTCGCAGCATCGGCACCA 205370 |||| |||||||| || || || | | | |||| | || || | ||| || | | Sbjct 782 TGTTACCACCCTGATCGACGTAACGGGCCGTGTTGTTGTAGACGCGTAACATGGGGATGA 841 Query 205371 GACCGTTGGCGGTCCCGTTCGTGC 205394 | ||||||| || ||||| |||| Sbjct 842 GCCCGTTGGACGTTCCGTTAGTGC 865 >seq10913 Length=581 Score = 118 bits (130), Expect = 2e-21 Identities = 162/224 (72%), Gaps = 2/224 (1%) Strand=Plus/Minus Query 203839 CTTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTT-CTCAGATAGTACATGC 203897 || |||||| ||||| ||||| | | | |||| ||||| | | || |||||||||| Sbjct 373 CTGGTCCACGGTGAATTGAATAGGGGCAGCAGCAG-CCTGCGTACGCAAGTAGTACATGC 315 Query 203898 CGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGG 203957 ||||||| || ||| || ||| || | ||||||||||| | |||| || | ||| Sbjct 314 CGGTCTTGAGTCCCAGCTTCCAACCAGCAAAGTGCATGGAAGTGATCTTGCCCATGGTGG 255 Query 203958 GGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGCGG 204017 |||| |||||||||||| || |||||| ||||||||||||| | || || |||| Sbjct 254 GGTCCTTCATGTGAATGTTGAGGGACTGGGACTGGTCGATGAAAGCACCACGGTCAGCGG 195 Query 204018 CCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTG 204061 |||| | | || ||| ||||||||||| || |||||| Sbjct 194 CCATCTGTACGATCTGGCGCTGAGAAATCTCCCAGACAGTCTTG 151 >seq19335 Length=805 Score = 95.1 bits (104), Expect = 2e-14 Identities = 326/496 (66%), Gaps = 13/496 (3%) Strand=Plus/Plus Query 203838 TCTTG-TCCACCGTGAACTGAAT-GGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACAT 203895 ||||| || || ||||| ||||| || | ||| ||| | || | | || |||||||| Sbjct 194 TCTTGGTCGACTGTGAATTGAATAGGTGCGGACG-CAGCCATGGTGCGGAGGTAGTACAT 252 Query 203896 GCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTT 203955 ||| ||||| || || || ||| || | ||||||||| | | ||| | || | | Sbjct 253 GCCCGTCTTGAGACCAAGCTTCCAGCCAGCGAAGTGCATGGAGGTGATTTTTCCCATGGT 312 Query 203956 GGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGC 204015 ||| || |||||| ||||| || ||||| ||||| ||||| | | || || || Sbjct 313 GGGTTCTTTCATGTGGATGTTGAGGGACTGAGACTGGTCAATGAACGCACCGCGGTCAGC 372 Query 204016 GGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAAC-ACGTCTCTGG 204074 |||||| | |||||| || ||| ||||| |||||||| ||||| || | |||| | | Sbjct 373 GGCCATCTGAATAATGTTC-GCTGTGAAATTTCCCACACTGTCTTATACAATGTCT-TTG 430 Query 204075 TGTGTTGAGGCACATCTTCCCACGTCCTG---ATCGAGCCGTTGTCGGCCATCAGTCTCA 204131 | | || || | || | | ||||| ||||||||| || || || | | Sbjct 431 TTTCTTCGGGAATAT-TAGGGA--TCCTGGCAATCGAGCCGCCATCAGCGATGATGCGGT 487 Query 204132 TCCTCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGA 204191 | || | | ||| ||| | |||| || || ||| | ||| ||||||| Sbjct 488 TTTTCATGTTCTCAGACCATAGACCCATGTCGACGAGATCCTTGAGCAGCCATGGGTTGA 547 Query 204192 TGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGA 204251 | || || || || | || || | |||| | | | ||| |||| |||| || | Sbjct 548 CCACTTGGAATTCACCAGCAAGTACACGACGGGAGTATATGTTTGAGGTGTATGGCTCAA 607 Query 204252 ACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCA 204311 | ||| |||||||| | ||||||| || || || |||||||| || | ||| | Sbjct 608 AACACTCATTGTTGCCCAGGATCTGAGACGTAGACGCTGT-GGCATGGGTGCAATGAGAA 666 Query 204312 GGGAGTTGCGCACACC 204327 | |||||||| ||||| Sbjct 667 GAGAGTTGCGGACACC 682 >seq41695 Length=397 Score = 89.7 bits (98), Expect = 8e-13 Identities = 187/272 (69%), Gaps = 10/272 (4%) Strand=Plus/Plus Query 159811 AACGGGGAGCGCTTCCGACAGAAACTCCTTCTCAATCTCGACCGC-TTCGGTCACAATCT 159869 |||||| ||||| || |||| ||||||| |||||| || ||||| ||| | |||||| | Sbjct 4 AACGGGTAGCGCATCAGACACGAACTCCTGCTCAATTTCCACCGCGTTCCG-CACAATGT 62 Query 159870 GCGAGACACGTTCGTACCCCGGC---TTGCCCAAAATGTGGTCCTTAAACAGGAGGCACG 159926 | || || | | |||| ||| | ||||||||| || | || | || | Sbjct 63 CATAAACCTGTGCTT---CCGGTAATTTGTTGACAATGTGGTCGGTATAGAGCATACAGG 119 Query 159927 CAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCG 159986 | || |||| |||||| || || || || ||||| | ||| || || | | ||||||| Sbjct 120 CGAAATCGCGGTGCAGCCCTTCATCGCGCGAGATAAGCTCATTCGAGAAGGAAAGGCCCG 179 Query 159987 GCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTA-AAAAAGATC 160045 |||| || || || || ||||| | || | ||| || | | | | || || ||| Sbjct 180 GCATCATACCCCGTTTCTTCAGCCAGTAGATCG-AGCAGAACGATCCCGAGAAGAAAATC 238 Query 160046 CCCTCCACGGCCGCAAACGCCACGAGCCTCTC 160077 ||||| ||| |||||||||| | |||| ||| Sbjct 239 CCCTCAACGACCGCAAACGCAATCAGCCGCTC 270 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 793860090968000