Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_013693.1 Length=158006 Score E Sequences producing significant alignments: (Bits) Value seq31280 158 1e-33 seq34332 82.4 8e-11 >seq31280 Length=10079 Score = 158 bits (174), Expect = 1e-33 Identities = 291/424 (69%), Gaps = 2/424 (0%) Strand=Plus/Plus Query 53643 CAGGCGCTCAAACATCACGCGGTTGATCTGAATACCGTAGTCGATACGGCGTTCGCGGTT 53702 |||||||| |||||| ||||| ||| | ||||||||| || | ||| ||||||| Sbjct 1320 CAGGCGCTGGTACATCATTTTGTTGAGCTGCACACCGTAGTCCATGTGACGTACGCGGTT 1379 Query 53703 TTCTTCAGTGCCACGGTTATTCTTCAGTACAACGACGTCATCGAACTGGTAATGCCACAG 53762 |||| |||||||| || ||||| || | | | || | | |||||||| Sbjct 1380 ACCTTCCACACCACGGTTGTTTTTCAGGACTAACAGGCTTTCTACTTCCAGATGCCACAT 1439 Query 53763 AGGGATGTACGCTGTCGCCGCACCACCACGAATGCCGCCCTGGGAGCAAGACTTGAGCGC 53822 || | || ||||| || || ||||| | ||||||||| || || || || | ||| Sbjct 1440 CGGATAGAACAGCGTCGCTGCGCCGCCACGGACGCCGCCCTGCGAACAGGATTTCACCGC 1499 Query 53823 CCCAGTGAGATACTTGATGAATGGGATCAGGCCTGTGTGAACCATCTCTCCGCCGCGAAT 53882 || | |||| ||| ||||| || || || | || ||||||||||| Sbjct 1500 TGTCTGGAAGTGCTTGTAGAACGGGATACAACCGGTATGGAAAGCTTCACCGCCGCGAAT 1559 Query 53883 AGGACTGCCAATCCCACGGATA-GCCCCGACGTCAAAGCCGATACCCGCACGTTTGGACA 53941 || ||||| | | | |||||| | |||| ||| || || ||||| || |||| || | Sbjct 1560 CGGGCTGCCCAGCGCGCGGATACGACCCG-CGTTAATACCAATACCTGCGCGTTGTGAAA 1618 Query 53942 CATAGTCAACGATGGTCTTGGCCGTTGCGTTGATAGAGTCCAGGGTGTCACCAGTTTTGA 54001 | || | || || | ||| || |||||||| || |||||| |||| ||| || | Sbjct 1619 CGTATTTCACAATAGCGCTGGAGGTCGCGTTGATGGAATCCAGGCTGTCGCCACATTCAA 1678 Query 54002 TCAGGACACAGGAACTGAACTGACGGGTAGGAGTACGAACACCTGCCATAATCGGGGTGG 54061 ||||||||||||| |||||||||||||| || ||||| || || | ||| || || || | Sbjct 1679 TCAGGACACAGGAGCTGAACTGACGGGTTGGCGTACGCACTCCCGACATGATTGGCGTCG 1738 Query 54062 GAAG 54065 | || Sbjct 1739 GCAG 1742 >seq34332 Length=487 Score = 82.4 bits (90), Expect = 8e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 138202 TGTAGTTCAGTCGGTAGAACGGCGGTCTGTTAAACCGTATGTCGCAGGTTCAAGTCCTGC 138261 ||||||||||||||||||||||||| ||||||| ||||||||| | ||||| ||||| | Sbjct 354 TGTAGTTCAGTCGGTAGAACGGCGGACTGTTAATCCGTATGTCACTGGTTCGAGTCCAGT 295 Query 138262 CATCGTCGCCAGA 138274 || | |||||| Sbjct 294 CAGAGGAGCCAGA 282 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 504667881208000