Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq28556 163 7e-35 seq29103 107 5e-18 seq2641 87.8 4e-12 >seq28556 Length=388 Score = 163 bits (180), Expect = 7e-35 Identities = 167/218 (77%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||||| ||||| | ||| || || ||||||||||| | |||||| |||| | || Sbjct 62 CGAAGTCGAAGGACCAAGTGAAGGGTAGACTCCTTTTGAATGTTGTAATCAGAGAGGGTA 121 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| Sbjct 122 CGGCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAGGAATGCCT 181 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 ||| ||||| ||||| ||| || || | ||| || | | ||||| || | | Sbjct 182 TCTTTGTCCTGGATCTTCGACTTGACATTGTCAATGGTATCCGAAGACTCTACTTCTAGC 241 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || ||||| || || || || ||||| Sbjct 242 GTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATTTG 279 >seq29103 Length=1863 Score = 107 bits (118), Expect = 5e-18 Identities = 151/208 (73%), Gaps = 3/208 (1%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGA-GAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 || || | ||||| | |||||||||||||| | ||||||||| || | ||| | || || Sbjct 1077 AGAACCAAGTGGACGCGTCGACTCCTTTTGAATGTTGTAGTCTGCAAGAGTGCGGCCGTC 1136 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 || |||||||| ||||| ||||| || |||||||||||||| ||| || || || Sbjct 1137 CTCAAGCTGCTT-CCGGC-AAGATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTC 1194 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||| ||||| ||| || |||| ||||| | | || || || | ||||| || Sbjct 1195 CTGGATCTTGGACTTGACATTGTCGATCGTGTCGGAGGACTCGACCTCAAGGGTGATGGT 1254 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATT 199624 ||| ||||| || || ||||| ||| || Sbjct 1255 CTTGCCCGTCAGGGTCTTCACGAAACTT 1282 >seq2641 Length=263 Score = 87.8 bits (96), Expect = 4e-12 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 200934 ACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCA 200993 ||| ||||| || || ||||||||||||||||| | || | |||||||||||| | || Sbjct 145 ACTCATCTTTGCTGGTAAGCAGTTGGAAGATGGTCGAACCCTTGCCGATTACAACATTCA 204 Query 200994 GAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 201029 |||||| |||||||| || || ||| | ||||||| Sbjct 205 GAAAGAATCTACTCTGCATCTGGTTCTTCGACTTCG 240 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1176953427230100