Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq51865 161 1e-34 seq95708 122 9e-23 seq44974 109 5e-19 seq29103 109 5e-19 seq108015 89.7 5e-13 >seq51865 Length=821 Score = 161 bits (178), Expect = 1e-34 Identities = 307/442 (69%), Gaps = 9/442 (2%) Strand=Plus/Minus Query 132666 CATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTGGTGCCGATCAGGTCGACGAGCAG 132725 |||||| || || ||||||| | || ||||| | | ||| | ||| || ||||| Sbjct 804 CATAAAGTCAAAAGGGTTGGTGGCGTGGTAGTACCTCGTGTTGCCGAGGGAGAGCAGCAG 745 Query 132726 CCTGTCGGCCACGAACTCGATGTATTGCGACATG-GTTTCGCAATTAAGTCCCAGCAGAC 132784 || |||||| || ||||| ||||| || ||||| | | || | | | || ||||| | Sbjct 744 CCGGTCGGCGACAAACTCAATGTACTGGCACATGAGGGTGGCGTTCATG-CCGAGCAG-C 687 Query 132785 GCACC-GGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATT 132843 |||| ||||| || |||| || || | |||||| |||| || ||||||| ||| Sbjct 686 GCACAAGGCAGGGCGTCGGACAGGAACTCCTTCTCGATCTCGACGGCCTCGGTGATGATG 627 Query 132844 TCCCTAACGCGCGCCGC--GCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCAAGCAA 132901 | ||| ||| | | ||| |||| | || ||| | || ||| |||| Sbjct 626 GCTTGCACG-GCGTCTTTGGAGGGGCGGTTGTTGAGGA-GCGAGAAGAGCAGGCAGGCAA 569 Query 132902 AGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCA 132961 ||||| |||| ||| ||||| | || ||||| |||||| || || | |||||||| Sbjct 568 AGTCGGTGTGCATGCCTTCGTCACGCGAGATGAGCTCGTTGGAAAAGGTGAGGCCGGGCA 509 Query 132962 TGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCT 133021 ||||||| || || |||||||| || |||| ||||||| ||| ||||||| || | Sbjct 508 TGAGGCCACGCTTCTTGAGCCAGAAGATGGAGGCGAAAGAGCCACTGAAGAAGATTCCTT 449 Query 133022 CGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTG-CTGGCGATCCAG 133080 | || || ||||| || ||||| || | | | || |||| | |||| | || |||||| Sbjct 448 CCACCGCAGCGAACGCTACCAGACGGTTGGCAAAGGTGGAGTTTTTGTCCGGAGATCCAC 389 Query 133081 CGCAGCGCCCATTCGGCCTTTT 133102 ||||| ||||| || ||||||| Sbjct 388 CGCAGGGCCCAGTCAGCCTTTT 367 Score = 159 bits (176), Expect = 3e-34 Identities = 181/241 (75%), Gaps = 4/241 (2%) Strand=Plus/Minus Query 133167 GTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAA 133226 ||||||||||||||| ||| ||| | |||||||| ||||||||||| ||| || || Sbjct 245 GTAGGTGTCGATGAGCAACGAGTACGTCTCCGAGTGGACGTTCTCCATCATGATCTGGAA 186 Query 133227 GCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATT 133286 |||||| ||||| |||||||| | || || || || ||| |||||||||| || Sbjct 185 GCCGTAGAAGCAGCGCGCCTCTGGGATTTGTACCTCGCTAGAGAAGCGCTCGACCAAGTT 126 Query 133287 TTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCG 133346 ||||||||||||||||| |||||| || ||||| || ||||| |||||| ||| Sbjct 125 CTCGTTGACGATGCCGTCCGAGGCGGCAAAGAAGGCGAGGACGTGGGAGATGAAGAAGCG 66 Query 133347 CTCGTTGTCGTTCAAGCG---CTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTC 133403 ||||| |||||| | || | ||||||| | ||||||||| || || | |||||| Sbjct 65 CTCGTCGTCGTT-AGTCGTTTGTTCCAGTCGTGGAGGTCCTTGGAGAGATCAATCTCCTC 7 Query 133404 G 133404 | Sbjct 6 G 6 >seq95708 Length=954 Score = 122 bits (134), Expect = 9e-23 Identities = 177/248 (71%), Gaps = 4/248 (2%) Strand=Plus/Plus Query 133195 TCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACC 133254 |||||||| | ||| ||||| ||| || || ||||||||||| || || || ||| Sbjct 92 TCCGAGTGGATGTTTTCCATCATGATCTGGAATCCGTAAAAGCAACGAGCTTCTGGCACT 151 Query 133255 TGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCG 133314 || || ||| ||||||||| |||| || |||||||| |||||||| ||| ||| Sbjct 152 TGGACCTCTCCGCTGAAACGCTCAACCAAGTTCTCGTTGACAATGCCGTCAGAGGCAGCG 211 Query 133315 AAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCG---CTCCCAG 133371 || || || || | ||| |||||| | ||||| |||||||| || | ||| Sbjct 212 AAGAATGCGAGGATGTGGGAGATGAAGTATTTCTCGTCGTCGTTCAGACGGTTGTTCCAA 271 Query 133372 TCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTT 133431 ||| || || ||||| || || | ||| ||| | ||||| || || |||||||| || Sbjct 272 TCGTGCAGATCTTTGGAGAGATCAATCTCTTCGGC-GTCCAGAAGGAAGCCTCGGCCTTC 330 Query 133432 TTGTACAT 133439 |||||||| Sbjct 331 TTGTACAT 338 >seq44974 Length=881 Score = 109 bits (120), Expect = 5e-19 Identities = 310/467 (66%), Gaps = 17/467 (4%) Strand=Plus/Plus Query 132591 CATCACGCCAAATTTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTC 132650 ||| || ||| |||||||| ||||| || |||||||| || || || || || | Sbjct 262 CATGACACCAGCCTTTTGATACTCGCCGACTCGCTTCTCAAAGAAGTTCGTCTTGCCGCC 321 Query 132651 CAAGGAAATGAGCGTCATAAAATCCAAGGGGTTGGCTGTGTTGTA---GTGCTTGGTGCC 132707 | ||||||| | ||| ||||| ||||||||||| || ||||| | || | | || Sbjct 322 TAGGGAAATGTTCTCCATGAAATCAAAGGGGTTGGCAGTCTTGTACACCTTCTCGTTACC 381 Query 132708 GATCAGGTCGACGAGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACAT---GGTTTC 132764 ||| | || || || | ||||| ||||| || ||||| ||| ||| || | Sbjct 382 ---CAGTGCAACCAGGAGGCGATCGGCGACGAATTCAATGTACTGCTTCATCAACGTGGC 438 Query 132765 GCAATTAAGTCCCAGCAGA-CGCACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGG 132823 | || | || || ||| |||| |||| || || || | || ||||||||||| Sbjct 439 G---TTCATACCGAGGAGAGCGCA-TGGCAATGCCTCTGTCAAGAACTCTTGCTCGATGG 494 Query 132824 CGACCGCGTCGGTGACGATTTCCCTAACGCGCGCCGCGCTCGGCCGTTGCACCAAATGCT 132883 ||| || || |||| |||||| || | | ||| | || ||| || || Sbjct 495 TGACAGCATCTGTGATAATTTCCTGAATGATTTGCTTGCTGGCGCGATGCTTCATGTGAG 554 Query 132884 TGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGC 132943 | || || ||| ||||| || ||||| |||| || | ||| || || |||||| Sbjct 555 AGTGCAGCAGGCATGCAAAATCAGTGTGCAA-ACCTCATCGCGGGAGATTAGCTCGTTGG 613 Query 132944 TGAAAGTCAAGCCGGG-CATGAGGCCGCGTTTTTTGAGCCAAAATAT-GGCGGCGAAACT 133001 ||| || | ||||| ||| || || || || |||||||| || || | ||| || Sbjct 614 AGAAGGTGAGTCCGGGACATCAGACCACGCTTCTTGAGCCAGAAGATAGTAGGCAAAGGC 673 Query 133002 GCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCT 133048 || ||||||| || |||||||| |||||||| |||| ||||| Sbjct 674 ACCACTGAAGAAGATACCTTCGACGGCGGCGAAAGCTACCAAGCGCT 720 >seq29103 Length=1863 Score = 109 bits (120), Expect = 5e-19 Identities = 157/219 (72%), Gaps = 3/219 (1%) Strand=Plus/Minus Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312 ||||| || || || |||||||| ||||||||| | || |||||| || |||||| | Sbjct 1278 TTCGTGAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCCGACACGATC 1219 Query 38313 CAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372 | | | || || |||| ||||| ||||| |||||| | ||||| ||||| || Sbjct 1218 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGCCTG 1159 Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432 || | ||| || ||||| || |||| ||||| || ||||||||||| |||||| Sbjct 1158 ATCTTGCCGG--AAGCAGCTTGAGGACGGCCGCACTCTTGCAGACTACAACATTCAAAAG 1101 Query 38433 GAAGCGACGC-TGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 || |||||| | || ||||| || ||| | |||| || Sbjct 1100 GAGTCGACGCGTCCACTTGGTTCTTCGTCTCCGAGGTGG 1062 >seq108015 Length=311 Score = 89.7 bits (98), Expect = 5e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 133168 TAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAG 133227 ||||| || ||||| || || |||| || || | |||||||| ||| || ||| Sbjct 86 TAGGTATCAATGAGAAGAGAGTATGTTTCAGAATGAATATTCTCCATCATGATCTGGAAG 145 Query 133228 CCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGC-GAAACGCTCGACCAGATT 133286 || |||||||| || ||||| | || || || | || |||||| || ||||| || Sbjct 146 CCATAAAAGCAGCGAGCCTCAGGAATTTGAACCTCC-GCGCTGAAACGTTCAACCAGGTT 204 Query 133287 TTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCG 133346 ||||||||||| || ||| |||||| || ||||| || | || |||||| | | Sbjct 205 CTCGTTGACGATACCATCGGAGGCGGCAAAGAAGGCGAGAATATGAGAGATGAAGTACTG 264 Query 133347 CTCGTTGTCGTTCAAGCG 133364 ||||| | || ||||||| Sbjct 265 CTCGTCGGCGGTCAAGCG 282 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499358143552000