Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_014260.1 Length=172253 Score E Sequences producing significant alignments: (Bits) Value seq31280 163 3e-35 seq49234 125 8e-24 seq50823 120 3e-22 seq49372 84.2 2e-11 >seq31280 Length=10079 Score = 163 bits (180), Expect = 3e-35 Identities = 271/389 (70%), Gaps = 2/389 (1%) Strand=Plus/Plus Query 144930 CCGTAGTCCATATGTCGAATACGGTTTTCATCAACGCCCTTGTTATTTTTCAGAACGAGC 144989 ||||||||||| || || | ||||| | || || || ||| |||||||| || | | Sbjct 1354 CCGTAGTCCATGTGACGTACGCGGTTACCTTCCACACCACGGTTGTTTTTCAGGACTAAC 1413 Query 144990 AGATTTTCAACTTCCAAATGCCAAATAGGATA-ATAAGCAGTAGCAGCGCCGCCACGGAT 145048 || |||| ||||||| |||||| || ||||| | ||| || || ||||||||||||| Sbjct 1414 AGGCTTTCTACTTCCAGATGCCACATCGGATAGAACAGC-GTCGCTGCGCCGCCACGGAC 1472 Query 145049 TCCACCTTGTGAACATGATTTAACAGCAGTCTGGAAATGTTTCCAGAATGGAATAACACC 145108 || || || ||||| ||||| || || |||||||| || || |||| || ||| ||| Sbjct 1473 GCCGCCCTGCGAACAGGATTTCACCGCTGTCTGGAAGTGCTTGTAGAACGGGATACAACC 1532 Query 145109 GGTATGTTTGACTTCACCCATGCCAATACGAGAACCTTCAGCACGAATCATACCAACGTT 145168 |||||| ||||||| || ||| | || || || || ||| |||| Sbjct 1533 GGTATGGAAAGCTTCACCGCCGCGAATCGGGCTGCCCAGCGCGCGGATACGACCCGCGTT 1592 Query 145169 GATACCAATACCTGCACGTTTAGAAATGTATTCAATTATCGAGTTAGCAGTTTTGTTAAT 145228 |||||||||||||| |||| |||| ||||| | || | | | | || ||| || Sbjct 1593 AATACCAATACCTGCGCGTTGTGAAACGTATTTCACAATAGCGCTGGAGGTCGCGTTGAT 1652 Query 145229 AGATTTCAGCGAGTCGCCTGCTTCAATAACCACACAAGAACTAAATTGGCGAGTCGGTGT 145288 || | ||| |||||| |||||| | ||||| || || || || || || || || Sbjct 1653 GGAATCCAGGCTGTCGCCACATTCAATCAGGACACAGGAGCTGAACTGACGGGTTGGCGT 1712 Query 145289 ACGCGCTCCAGCCATAATAGGGGTAGGCA 145317 |||| |||| | ||| || || || |||| Sbjct 1713 ACGCACTCCCGACATGATTGGCGTCGGCA 1741 >seq49234 Length=879 Score = 125 bits (138), Expect = 8e-24 Identities = 145/191 (76%), Gaps = 6/191 (3%) Strand=Plus/Plus Query 59709 TTATCATAAAAGAAAGTAACATGGCCTGTACCAAGGATAAAAGTAGAGCTAATTTTAAAA 59768 |||| ||| || || |||||||| |||||||| | || | |||| || ||||||||| Sbjct 364 TTATTATAGAA-AATGTAACATGACCTGTACCTAA-ATGTAGGTAGTACTGATTTTAAAA 421 Query 59769 TCACGAACACGTTTACCATTAGCAACATGCTTACGAACTGCACCGAAAACACGTGGTAAT 59828 ||| | ||||||||| || ||||||||||| |||||||| |||||||| ||| Sbjct 422 TCATTGATTCGTTTACCAGCTTGTACGTGCTTACGAACAGCACCGAATACACGTGGCAAT 481 Query 59829 TCGCGATATTCAGCCATTAAGTGTTGGTCGGCCAATTCAGATACTAAGGTA--AGGTTAA 59886 || || ||||||||||| | |||||||| || ||||| |||| |||| || || | Sbjct 482 TCACGGTATTCAGCCATAAGATGTTGGTCAGCTAATTCTTGTACT--GGTACGAGATTGA 539 Query 59887 TACGAGTCATT 59897 |||| |||||| Sbjct 540 TACGGGTCATT 550 >seq50823 Length=3276 Score = 120 bits (132), Expect = 3e-22 Identities = 141/187 (75%), Gaps = 3/187 (2%) Strand=Plus/Plus Query 59715 TAAAAGAAAGTAACATGGCCTGTACCAAGGATAAAAGTAGAGCTAATTTTAAAATCACGA 59774 ||||| || |||||||| ||||| ||||| ||| | | || |||||||||||| | Sbjct 128 TAAAAAAAGGTAACATGTCCTGTTCCAAGAATATAGCTTTTACTTATTTTAAAATCATTA 187 Query 59775 ACACGTTTACCATTAGCAACATGCTTACGAACTGCACCGAAAACACGTGGTAATTCGCGA 59834 | | ||| ||| | |||| || || | |||||||| || |||||||||||||| ||| Sbjct 188 ATAT-TTTCCCAGCATCAACGTGTTTCCTTACTGCACCAAATACACGTGGTAATTCACGA 246 Query 59835 TATTCAGCCATTAAGTGTTGGTCGGCCAATT-CAGATACTAAGGTAAGGTTAATACGAGT 59893 ||||||||||| | ||||| |||||||||| | || | | ||| || || ||||| Sbjct 247 TATTCAGCCATCAGATGTTGATCGGCCAATTCCTGAACCGGAACTAA-ATTTATCCGAGT 305 Query 59894 CATTTTA 59900 ||||||| Sbjct 306 CATTTTA 312 >seq49372 Length=1062 Score = 84.2 bits (92), Expect = 2e-11 Identities = 154/223 (69%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 63055 GTTATCTTGGAATCGTTTGATGTAGTCGTTTTCACCTAAAGTCTTGTACATATTAACCAC 63114 ||| |||| ||| ||||| || || || | ||| || || | ||||||||||| || Sbjct 279 GTTTTCTTTGAAACGTTTAATATAATCATCTTCGCCAAATTTACGATACATATTAACTAC 338 Query 63115 AGCTTGGTAGTTTTCCCAGGCGTACTCACGGAACCAACCTGAAGTGATTGAGGTACACAC 63174 | | | || ||||| | | || | ||||| ||||| || || ||||||| Sbjct 339 TGTATTAAAATTCTCCCAAGAAAATTCTCTAAACCATCCTGACGTAATACTACTACACAC 398 Query 63175 TTTCTCAAGAGCCATATAGAAACT-TAATGATGGTGAAATATTGAAGTCATTAGGAACCT 63233 ||| | | ||| || ||||| | | || | | || | | || | |||||| | | Sbjct 399 TTTAACTAAAGCAGTAATAAAACTCTGACGAGGATCAATT-TCAAAATTATTAGGGATTT 457 Query 63234 GTGAACGTTCTAGTGCCAGGACACAAGTTTCTTCATATACACC 63276 |||||||||||| ||| || ||||| ||||||||||||||||| Sbjct 458 GTGAACGTTCTAATGCAAGAACACATGTTTCTTCATATACACC 500 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 550184025844000