Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_014636.1 Length=225268 Score E Sequences producing significant alignments: (Bits) Value seq38626 150 3e-31 seq103771 113 6e-20 seq40411 109 8e-19 seq36028 102 1e-16 seq52264 96.9 5e-15 seq57967 93.3 6e-14 seq68431 86.0 9e-12 seq79976 84.2 3e-11 >seq38626 Length=1471 Score = 150 bits (166), Expect = 3e-31 Identities = 377/566 (67%), Gaps = 14/566 (2%) Strand=Plus/Minus Query 124432 CCCAGCTAGTGCCTAGTCCAAACCCGAAAGTGCAGAATGGAGTTTGACCATTTGCCGAGT 124491 ||||||| || || | || ||||| || ||| || || || || || ||||||| | Sbjct 1197 CCCAGCTTGTCCCCAACCCGAACCCAAACGTGACAAACGGTGTCTGGCCGTTTGCCGTAT 1138 Query 124492 GCAGAGTGTTTACCTCATACTCTAGGCTTTGCATTGCATCATA-CACGGCTTTGCGAGTC 124550 |||| |||||||||||||| || || || | || ||||| ||| ||| || Sbjct 1137 GCAGCGTGTTTACCTCATATTCCAGCGACTGAAAGGCGTCATAGCACTCTTTTTCGG--- 1081 Query 124551 TTTTCAATAGCGT--ATTGCCTTTGATCTGGA-ATTTTCCAATAACGCGCTTCATCCAAA 124607 | | | ||| || | ||| |||| || | ||| | ||||| | || | Sbjct 1080 --TACGCTGGCGGGCATAGGCTTCCGCCTGGGGATATCCCAGTGCTGCGCTACCTCTTTA 1023 Query 124608 TGCTTTTCATGTGTCATCTTAACATAAGGTGCCAATGCTTCGTCAATGCGATTAATTGTG 124667 ||| || | ||| |||||| ||||||| | |||||||| ||||| | ||| Sbjct 1022 TGCCGGGCAAAACTTTTCTCAACATAGGGTGCCAGCACCTCGTCAATACGATTCAGCGTG 963 Query 124668 TTGCCACCATAAATGTGACTTGCAACCTGTGCAATGATTTGAGCAGTAACAGCCGCAGCG 124727 | || ||||| || || || |||||||| ||||||||||| ||||| || || | ||| Sbjct 962 GTTCCGCCATAGATATGGCTGGCAACCTGGGCAATGATTTGCGCAGTCACCGCAGTGGCG 903 Query 124728 GTAGCGATGCTCTTAGGAGTTTCGATCTGTGCATTACCCA-TGCGGAACCCACGCTCTAA 124786 ||||| || | | || | ||||||| || || |||| | |||| | || | Sbjct 902 GTAGCAATCGACCTGGGCGGCTCGATCTCCGCGTTGCCCATTTTAAAACCGTTGGTC-AG 844 Query 124787 CATGCCGTTGAGATCAATCAACATGCAGTTAAACATTGGGAAGAACGGAGAGTAATCAAG 124846 |||||| || ||||| |||| ||||||||||||||| |||||||| || | |||||| || Sbjct 843 CATGCCTTTCAGATCGATCAGCATGCAGTTAAACATGGGGAAGAAAGGCGCGTAATCGAG 784 Query 124847 ATCATGGAAGTGAATAAAACCAGCTTCGTGTGCTTGCAGAACTTCGGTCGGCAG---ATA 124903 ||| || | || || || || || || || | || || ||||| | Sbjct 783 ATCGTGATAATGGATCTCGCCGCGCTCATGCGCCTGAACCACATCACGAGGCAGGATTTG 724 Query 124904 GTGCTTTGCAAAGTGCTTGCTTACTATGCCCGCGACTAAATCGCGTTGTGTCGGAATAAC 124963 |||| || | || || || || || || | ||||||||||| ||||| || || Sbjct 723 CTGCTGGGCGTAATGTTTCGCCACAATCCCGGCCAGCAAATCGCGTTGGGTCGGGATCAC 664 Query 124964 TTTTGCATCTTTGTTTGCATTCTCAT 124989 ||| ||||| || ||||| |||| Sbjct 663 TTTGCTGTCTTTATTGGCATTTTCAT 638 >seq103771 Length=482 Score = 113 bits (124), Expect = 6e-20 Identities = 249/369 (67%), Gaps = 6/369 (2%) Strand=Plus/Plus Query 124740 TTAGGAGTTTCGATCTGTGCATTACCCATGCGGAACCCACGCTCTAACATGCCGTTGAGA 124799 || || | ||| |||| || |||||||| ||| || || | |||||||| ||| Sbjct 6 TTTGGCGGTTCAATCTCGGCGTTACCCATTTTGAAGCCGTGCGTCAGCATGCCGTGCAGA 65 Query 124800 TCAATCAACATGCAGTTAAACATTGGGAAGAACGGAGAGT-AATCAAGATCATGGAAGTG 124858 || |||| ||||||||||||||| |||||||| ||||||| | || || || || |||| Sbjct 66 TCGATCAGCATGCAGTTAAACATCGGGAAGAAGGGAGAGTGAGTCGAGGTCGTGATAGTG 125 Query 124859 AATAAAACCAGCTTCGTGTGCTTGCAGAACTTCGGTCGGCAG---ATAGTGCTTTGCAAA 124915 || ||| ||| || || ||| || ||| |||||| | |||| ||| | Sbjct 126 GATCTCCCCACGTTCATGCGCCAGCACCACATCGCGCGGCAGCAACTGCTGCTGGGCATA 185 Query 124916 GTGCTTGCTTACTATGCCCGCGACTAAATCGCGTTGTGTCGGAATAACTTTTGCATCTTT 124975 || ||| || ||||| || | | ||||| || ||||| || ||||| ||||| Sbjct 186 ATGTTTGGCCACGATGCCGGCCAGCAGGTCGCGCTGCGTCGGGATCACTTTGCTGTCTTT 245 Query 124976 GTTTGCATTCTCATTCATGATCCCTTCGTCTTCTTGCTTCATCAGTCCGACGATTCGCTT 125035 ||| || || || || | | | | ||| || | || ||| ||| ||| | || | Sbjct 246 GTTAGCGTTTTCGTTGAGCAGCGCCGCGTTGGTCTGTTCCACCAGGCCG-CGAATGGCAT 304 Query 125036 GGT-CATATCGCTGTTCATATCGCGAGCAACGTCACGATCATAGCGGTATTCGATGTAGG 125094 ||| || | || | | ||||| || | || || || | ||||||||||| |||| Sbjct 305 GGTGCAGCTTGCCGCGCTGCTCGCGCGCCAGATCCCGGTCGTGACGGTATTCGATATAGG 364 Query 125095 CGCGAGCCA 125103 |||| |||| Sbjct 365 CGCGCGCCA 373 >seq40411 Length=1793 Score = 109 bits (120), Expect = 8e-19 Identities = 280/418 (67%), Gaps = 14/418 (3%) Strand=Plus/Minus Query 123221 ATGTTTGACACGACGCTGGACTTCGTCCTGTTTGCCGACGTTAAATGCGCGAGATCCAGG 123280 |||||| || |||||||| ||||| | ||||| || | ||||| | ||| | | || Sbjct 933 ATGTTTAACCCGACGCTGCACTTCCTGTTGTTTTCCCGCATTAAACGGGCGCGCGTCCGG 874 Query 123281 GTTACCCAAATACCCACAGACGCGACGAATAACGTTCATCT-TACGGTCATCGTGATTGC 123339 | |||| ||| ||||| || || || | || | | | | | ||||||||||| Sbjct 873 ACTGCCCAGATAGCCACAAACCCGCCGTGTGACCGAAACCCGTGCAGG-ATCGTGATTGC 815 Query 123340 CACACTTCGGACATTCGTATCCTTTAGAAGTAGCGGTAAACTCACCGTTAAATCCACATT 123399 | || ||||| || |||| ||| ||| || || ||||| || ||||| | Sbjct 814 CGCAGTTCGGGCAGGTAAATCCGCGGCTGGTACAGGTGAATTCCCCGTTGAAGCCACAGT 755 Query 123400 CAAAACAAACATCAACTGGAGTGTTTGTTCCATAGTACGG--AGTGTTCCGATAAGCATA 123457 | |||| | |||| ||| ||||| || || ||||| || | | || || || Sbjct 754 CGTAACATTCGTCAATTGGCGTGTTGGTGCCGTAGTAAGGCACGCGGTC--GTAGCTGTA 697 Query 123458 ATCCCAAACTGCTTCGAGTGCTTCCAGATTGTGTTTCATATTCGGATATTCACCGTATGA 123517 |||||| || |||| || || | || ||||| | || ||| |||||||| ||||| | Sbjct 696 ATCCCAGACGTCTTCCAGCGCCTTAAGGTTGTGCTGCACATTGGGATATTCGCCGTAACA 637 Query 123518 AATGAAACCACC---GGTACTAAGCGGA-ATGAATTGCTTTTCAAAATCGATCTTGTCAT 123573 || ||||| || || ||||| | | | || |||||||||||| || || | Sbjct 636 GATAAAACCGCCATTGGAGAGTGGCGGATAGGGA--GC--TTCAAAATCGATTTTTTCGT 581 Query 123574 ACGGATTTGTGTTCATATCCACAGACAGATGGAAGCTGTTTGTGTAATAGTCTTTATC 123631 | ||||| ||| | || || ||||||||||||||| |||||||| |||| || Sbjct 580 AAGGATTCACCTTCTTCTCAACGTCCAGATGGAAGCTGTTGGTGTAATAACCTTTGTC 523 >seq36028 Length=2231 Score = 102 bits (112), Expect = 1e-16 Identities = 101/131 (77%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 127055 CTGGGTGCCTTTGAGGTGCAATTGTTCATCACGCGCAATCAGTTTCATGATCTTAGCGTT 127114 ||||||||| | ||||||| ||| || || |||||||| || ||||| || ||||| Sbjct 614 CTGGGTGCCGGTCAGGTGCAGAGCTTCGTCGCGTGCAATCAGCTTGATGATTTTGGCGTT 555 Query 127115 GCCTTCCATCAAACCGCGTTCGGCAAACGAGAAGGTGCAGGCGAAGCTTACATAAAAACG 127174 ||||||||||| | || || ||||||| || | |||||| ||||| || || || || Sbjct 554 GCCTTCCATCAGTTCTCGCTCAGCAAACGCAAAAGAGCAGGCAAAGCTGACGTAGAAGCG 495 Query 127175 AATCGCTTCCA 127185 |||||||||| Sbjct 494 GATCGCTTCCA 484 >seq52264 Length=2351 Score = 96.9 bits (106), Expect = 5e-15 Identities = 69/78 (88%), Gaps = 1/78 (1%) Strand=Plus/Minus Query 191942 TTTGGCAGGGGCGGTAGGAGTCGAA-CCCACCTCAACGGATTTGGAATCCGCCGCATAAC 192000 |||| |||||| |||||| ||||| ||||||||||||||||||||||||| |||||||| Sbjct 1610 TTTGTCAGGGGTTGTAGGAATCGAAACCCACCTCAACGGATTTGGAATCCGTCGCATAAC 1551 Query 192001 CGATTTGCTACGCCCCTA 192018 || ||||||| |||||| Sbjct 1550 CGCTTTGCTAAACCCCTA 1533 >seq57967 Length=406 Score = 93.3 bits (102), Expect = 6e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 124628 AACATAAGGTGCCAATGCTTCGTCAATGCGATTAATTGTGTTGCCACCATAAATGTGACT 124687 |||||| ||||||| | |||||||| ||||| | ||| | || ||||| || || || Sbjct 141 AACATAGGGTGCCAGCACCTCGTCAATTCGATTCAGCGTGGTTCCGCCATAGATATGGCT 82 Query 124688 TGCAACCTGTGCAATGATTTGAGCAGTAACAGCCGCAGCGGTAGCGATGCTCTTAGGAGT 124747 |||||||| ||||||||||| || || || || | |||||||| || | | || | Sbjct 81 GGCAACCTGGGCAATGATTTGCGCGGTCACCGCAGTGGCGGTAGCAATCGACCTGGGCGG 22 Query 124748 TTCGATCTGTGCATTACCCAT 124768 ||||||| || |||||||| Sbjct 21 CTCGATCTCCGCGTTACCCAT 1 >seq68431 Length=305 Score = 86.0 bits (94), Expect = 9e-12 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 189402 ATTTGGTGGCCCCGAGCGGACTCGAACCGCTTTTCTTCGCTTATGAGGCGAGCACATTTA 189461 |||||||||||||| | | | ||||| | | |||||| ||||||||||| || ||||||| Sbjct 30 ATTTGGTGGCCCCGTGGGTAATCGAAACCCATTTCTTGGCTTATGAGGCCAGTACATTTA 89 Query 189462 CCCTTATGTTACGGGGCCTT 189481 || |||||||| ||||||| Sbjct 90 CCTATATGTTACAGGGCCTT 109 >seq79976 Length=802 Score = 84.2 bits (92), Expect = 3e-11 Identities = 70/82 (85%), Gaps = 3/82 (4%) Strand=Plus/Plus Query 189965 GTGCGGATGGTCGGACTCGAACCGACACG-CCTATGGCGCTAGAACCTAAATCTAGTGCG 190023 ||| ||||||||||||||||||||||||| || | |||| || ||||||| || |||| Sbjct 75 GTGGGGATGGTCGGACTCGAACCGACACGCCCGAAGGCGTGAGTACCTAAA-CTCATGCG 133 Query 190024 T-CTGCCAATTTCGCCACATCC 190044 | || ||||||||||||||||| Sbjct 134 TGCTACCAATTTCGCCACATCC 155 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 719555711664000