Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_014661.1 Length=164093 Score E Sequences producing significant alignments: (Bits) Value seq31280 154 2e-32 seq49372 114 1e-20 seq62284 86.0 7e-12 >seq31280 Length=10079 Score = 154 bits (170), Expect = 2e-32 Identities = 292/426 (69%), Gaps = 8/426 (2%) Strand=Plus/Plus Query 141468 CCATAATCCATGTGACGAATACGGTTTTCTTCAACACCTTTGTTGTTCTTCAACACAATC 141527 || || ||||||||||| | ||||| |||| ||||| |||||| |||| || | | Sbjct 1354 CCGTAGTCCATGTGACGTACGCGGTTACCTTCCACACCACGGTTGTTTTTCAGGACTAAC 1413 Query 141528 AAGTTTTCCACTTCAAGGTGCCACATAGGGAAGAACATTGTTGCCGAACCTTTACGAATA 141587 | | |||| ||||| || |||||||| || |||||| || || | || ||| | Sbjct 1414 AGGCTTTCTACTTCCAGATGCCACATCGGATAGAACAGCGTCGCTGCGCCGCCACGGACG 1473 Query 141588 CCACCTTGAGAACAGCAATGAACCGCTGAGTTAAAGTGCTTCCAGAAAGGTACTAC-GCC 141646 || || || |||||| | | ||||||| | |||||||| |||| || | ||| || Sbjct 1474 CCGCCCTGCGAACAGGATTTCACCGCTGTCTGGAAGTGCTTGTAGAACGGGA-TACAACC 1532 Query 141647 AGTGTGTTTGACTTCGCCTGGGCCAATTTTCGAACCTTCAGCTCGAATCATGCCTGCGTT 141706 || || |||| || || ||| || || || || || ||||| Sbjct 1533 GGTATGGAAAGCTTCACCGCCGCGAATCGGGCTGCCCAGCGCGCGGATACGACCCGCGTT 1592 Query 141707 AATCCCGATACCTGCTCGCTTAGAAACATACTTAACAATAGC---AGAGTTTGCATCATT 141763 ||| || |||||||| || | ||||| || || |||||||| ||| | | | || Sbjct 1593 AATACCAATACCTGCGCGTTGTGAAACGTATTTCACAATAGCGCTGGAGGTCG---CGTT 1649 Query 141764 GATTGAGTCAAGGCTGTCACCAGATTCAATAACTACACATGAACTGAATTGACGAGTTGG 141823 ||| || || |||||||| ||| ||||||| | ||||| || ||||| ||||| ||||| Sbjct 1650 GATGGAATCCAGGCTGTCGCCACATTCAATCAGGACACAGGAGCTGAACTGACGGGTTGG 1709 Query 141824 GGTACGAACACCAGCCATAATTGGAGTAGGCAACGAGATTTTACGAGTTGAAACAGCTTC 141883 ||||| || || | ||| ||||| || |||| ||||||||| || |||| || || Sbjct 1710 CGTACGCACTCCCGACATGATTGGCGTCGGCAGGGAGATTTTAAACGTGGAAATCGCATC 1769 Query 141884 ATAAAA 141889 || || Sbjct 1770 GTAGAA 1775 >seq49372 Length=1062 Score = 114 bits (126), Expect = 1e-20 Identities = 218/315 (69%), Gaps = 7/315 (2%) Strand=Plus/Plus Query 34568 TAACTAC---ATCAAAGTTTTCCCAAGCGAATTCACGGAACCAGCCTGAAGTAAT-CGAC 34623 ||||||| || ||| || ||||||| ||||| | ||||| ||||| ||||| | || Sbjct 332 TAACTACTGTATTAAAATTCTCCCAAGAAAATTCTCTAAACCATCCTGACGTAATACTAC 391 Query 34624 GTACAGACTTTCTCGAGAGCAATCATGAAACTTTCGTATGGACGAACCATAAACTCATTA 34683 |||| ||||| | | |||| | || ||||| | ||| || ||| | |||| Sbjct 392 -TACACACTTTAACTAAAGCAGTAATAAAACTCTGACGAGGATCAATTTCAAAATTATTA 450 Query 34684 GGAATCTGTGAACGTTCTAATGCAAGGACGTATGATTCTTCGAGGACTCCGAGTAATTGG 34743 || || |||||||||||||||||||| || ||| |||||| || || | ||||| Sbjct 451 GGGATTTGTGAACGTTCTAATGCAAGAACACATGTTTCTTCATATACACCCAATAATTTA 510 Query 34744 ACTGCCTTGCTTTGAGCAAAGAAACGATCTTT-GTCGCAATGAACTTCTTGATTTTCAGT 34802 ||| | | ||| || |||||||| ||||| | | || ||| ||| | ||| Sbjct 511 ACTTCATCGCTCTGTGCAAAGAACTTTTCTTTACTTGTCAT-AACGTCTGCACCTTCCAC 569 Query 34803 CATGTAGTATTCGTATGCTGGCTTGTCAAGAAGCTTTACTGCTCGATGAATCGAGTCATG 34862 || |||| ||||| || |||||||| | |||| ||| ||||| | ||||| Sbjct 570 AATATAGTTCATATATGCAGGTTTGTCAAGTACTTTTATCGCTTCGTGAATAGTATCATG 629 Query 34863 GTCATAAATGTAATT 34877 |||||||||||| || Sbjct 630 GTCATAAATGTAGTT 644 >seq62284 Length=976 Score = 86.0 bits (94), Expect = 7e-12 Identities = 105/141 (74%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 141717 CCTGCTCGCTTAGAAACATACTTAACAATAGCAGAGTTTGCATCATTGATTGAGTCAAGG 141776 || ||| |||||||| ||| || | || ||||| || || || | || ||| ||| Sbjct 347 CCAGCTTTCTTAGAAATATATTTCATGATTGCAGAATTACCAGCACTAATACTGTCTAGG 406 Query 141777 CTGTCACC-AGATTCAATAACTACACATGAACTGAATTGACGAGTTGGGGTACGAACACC 141835 ||||| || | ||||| || | ||||| ||||||||||||||||| ||||| | ||| Sbjct 407 CTGTCTCCTACATTCATTA-CAACACAAGAACTGAATTGACGAGTATTTGTACGTAAACC 465 Query 141836 AGCCATAATTGGAGTAGGCAA 141856 ||||||||| || || || || Sbjct 466 AGCCATAATAGGTGTTGGTAA 486 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 524114555764000