Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_014662.1 Length=165540 Score E Sequences producing significant alignments: (Bits) Value seq49234 140 3e-28 seq33108 127 2e-24 seq50823 104 2e-17 seq49372 98.7 1e-15 seq34305 84.2 2e-11 >seq49234 Length=879 Score = 140 bits (154), Expect = 3e-28 Identities = 128/159 (81%), Gaps = 2/159 (1%) Strand=Plus/Plus Query 64204 TTTATCATAAAAGAAAGTAACATGACCTGTACCTAAAATGAAAACCGAAGAGATTTTAAA 64263 ||||| ||| || || ||||||||||||||||||||| || | | | ||||||||| Sbjct 363 TTTATTATAGAA-AATGTAACATGACCTGTACCTAAA-TGTAGGTAGTACTGATTTTAAA 420 Query 64264 ATCCTTAAGCTTTTTACCATTTTGAACATGCTTACGAACGGCACCAAAAACACGTGGCAA 64323 ||| || | ||||||| ||| || ||||||||||| ||||| || ||||||||||| Sbjct 421 ATCATTGATTCGTTTACCAGCTTGTACGTGCTTACGAACAGCACCGAATACACGTGGCAA 480 Query 64324 TTCACGATACTCAGCCATAAGATGTTGGTCGGCCAGTTC 64362 |||||| || |||||||||||||||||||| || | ||| Sbjct 481 TTCACGGTATTCAGCCATAAGATGTTGGTCAGCTAATTC 519 >seq33108 Length=3479 Score = 127 bits (140), Expect = 2e-24 Identities = 132/173 (76%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 62002 GTGAAAGTACGTGCAATAACGTCACGCTGCTGTTCTGACGTCAGAGAATTAAATCGGACA 62061 || || ||||| ||||| ||||||||||| ||||| | |||||| |||||||| || || Sbjct 2955 GTAAAGGTACGGGCAATGACGTCACGCTGTTGTTCAGGCGTCAGCGAATTAAAGCGCACG 2896 Query 62062 GCATAACCAGAAACACGAATAGTCAGCTGAGGATATTTTTCTGGATGTTGAACTGCATCT 62121 ||||| || ||||||||||| |||||||| ||||| || || ||||||| || || ||| Sbjct 2895 GCATACCCGGAAACACGAATGGTCAGCTGCGGATACTTCTCAGGATGTTTCACGGCGTCT 2836 Query 62122 TCTAAAGTTTCTTTAGTCAGAACATTCACGTTCAGATGTTGGCCACCTTCAAC 62174 || | ||||| ||| || || ||||| | || || || ||||| || Sbjct 2835 TCCAGCGTTTCACGGCGCAGGACGTTAACGTTTAAGTGCTGCCCGCCTTCCAC 2783 >seq50823 Length=3276 Score = 104 bits (114), Expect = 2e-17 Identities = 139/192 (72%), Gaps = 1/192 (1%) Strand=Plus/Plus Query 64211 TAAAAGAAAGTAACATGACCTGTACCTAAAATGAAAACCGAAGAGATTTTAAAATCCTTA 64270 ||||| || |||||||| ||||| || | ||| | | ||||||||||| ||| Sbjct 128 TAAAAAAAGGTAACATGTCCTGTTCCAAGAATATAGCTTTTACTTATTTTAAAATCATTA 187 Query 64271 AGCTTTTTACCATTTTGAACATGCTTACGAACGGCACCAAAAACACGTGGCAATTCACGA 64330 | |||| ||| | ||| || || | || |||||||| |||||||| ||||||||| Sbjct 188 ATATTTTC-CCAGCATCAACGTGTTTCCTTACTGCACCAAATACACGTGGTAATTCACGA 246 Query 64331 TACTCAGCCATAAGATGTTGGTCGGCCAGTTCAGATACTAAAGTTAAGTTAATGCGTGTC 64390 || |||||||| |||||||| ||||||| ||| || | ||| || || || ||| Sbjct 247 TATTCAGCCATCAGATGTTGATCGGCCAATTCCTGAACCGGAACTAAATTTATCCGAGTC 306 Query 64391 ATTTTTAATCTC 64402 ||||| ||| || Sbjct 307 ATTTTAAATATC 318 >seq49372 Length=1062 Score = 98.7 bits (108), Expect = 1e-15 Identities = 163/228 (71%), Gaps = 12/228 (5%) Strand=Plus/Plus Query 67740 GTTTTGTTTAAAGCGTTTGACATAATCTGTCTTT-CCAAGTTTCTTATGCATTGCAACTA 67798 ||||| ||| || ||||| | |||||| |||| |||| ||| || ||| ||||| Sbjct 279 GTTTTCTTTGAAACGTTTAATATAATCA-TCTTCGCCAAATTTACGATACATATTAACTA 337 Query 67799 TCTTATGGTAGTTTTCCCATGCATATTCACGAAACCAGCCAGATGTAATGCTAGTACAAA 67858 ||| | || ||||| | | |||| | |||||| || || ||||| ||| |||| | Sbjct 338 CTGTATTAAAATTCTCCCAAGAAAATTCTCTAAACCATCCTGACGTAATACTACTACACA 397 Query 67859 CTTTTTCCAAAGC-GTACATAAA----TGAACCCGTAGGGTCTGGGTTGAAATTATTTGG 67913 |||| | ||||| ||| ||||| ||| || ||| || | |||||||| || Sbjct 398 CTTTAACTAAAGCAGTA-ATAAAACTCTGA---CG-AGGATCAATTTCAAAATTATTAGG 452 Query 67914 AATTTGATGGCGTTCTAAAGCAAGTACACAAGTTTCTTCATATACACC 67961 ||||| |||||||| ||||| ||||| ||||||||||||||||| Sbjct 453 GATTTGTGAACGTTCTAATGCAAGAACACATGTTTCTTCATATACACC 500 >seq34305 Length=2218 Score = 84.2 bits (92), Expect = 2e-11 Identities = 124/176 (70%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 61998 CTTGGTGAAAGTACGTGCAATAACGTCACGCTGCTGTTCTGACGTCAGAGAATTAAATCG 62057 || ||| || ||||| | ||| ||||| ||||||| ||| || || || ||||| || Sbjct 595 CTGGGTAAAGGTACGGGTAATCACGTCCTGCTGCTGCTCTTTGGTGAGCGAGTTAAAGCG 654 Query 62058 GACAGCATAACCAGAAACACGAATAGTCAGCTGAGGATATTTTTCTGGATGTTGAACTGC 62117 || ||||| || ||||| || || || | |||||||||||| || || | | | ||| Sbjct 655 AACGGCATAGCCCGAAACGCGGATGGTTAACTGAGGATATTTCTCAGGGTTATCCATTGC 714 Query 62118 ATCTTCTAAAGTTTCTTTAGTCAGAACATTCACGTTCAGATGTTGGCCACCTTCAA 62173 || || |||| ||| || || || |||||||| ||||| ||||||| Sbjct 715 GTCCATCAACATTTCCCGGTTCATCACGTTAACATTCAGATGCTGGCCGCCTTCAA 770 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 528737414000000