Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq97857 156 5e-33 seq41695 109 7e-19 seq104936 98.7 1e-15 seq46431 96.9 4e-15 seq51865 91.5 2e-13 seq44974 89.7 6e-13 seq40057 82.4 9e-11 >seq97857 Length=911 Score = 156 bits (172), Expect = 5e-33 Identities = 314/458 (69%), Gaps = 11/458 (2%) Strand=Plus/Minus Query 112000 TCGCAGTCTATCTTGAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCA 112059 ||||| |||| || |||||||||||||| ||||| | | ||| | || | ||| | Sbjct 766 TCGCAATCTACCTCGAGCCATGGCACGCCGATATATTTGGCTTCTTGGACCTTCGTAAGA 707 Query 112060 ACCAAGGTGATGAGGAGG--CGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGA 112117 |||| || | ||||| | |||| | ||||| | |||| ||| || ||||| || || Sbjct 706 ACCATGGCAAAGAGGAAGTTCGCGCT--CGCGACTTATTCTACGCCCTGTGGATCCCGGA 649 Query 112118 TCTCTTCATGAAGAGAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGC 112177 ||||||||||||| | || | |||| ||| | ||| |||| | ||||| || || Sbjct 648 TCTCTTCATGAAGCGTGTCCAAGAGAATGGGGAGTGGACTCTGATGTGTCCCAACGAGTG 589 Query 112178 ACCCGGTCTCTCCGATGCCGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAG-- 112235 || |||||| | || | | ||||| |||||||| ||||||||| || || ||| Sbjct 588 TCCTGGTCTCGCGGACGTCTACGGTGATGAGTTTGAGGCCCTCTACGAAAGTTATGAGAA 529 Query 112236 GAAGAAAGTCGGGCGACTGCGACGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAG 112295 ||||| || || || ||| || | || | || | | | | || || ||| || Sbjct 528 AAAGAACAAAGGTCG--TGAGACCGTTCGCGC-CCAGAAG-CTCGTATGCCATCCTCGAG 473 Query 112296 TCTCAAACCGAGACTGGTACACCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGT 112355 ||||||| |||||||||| || | ||||||||||| ||||| || |||| || || Sbjct 472 GCTCAAACTGAGACTGGTAATCCCTTCATGCTTTACAAGGACGCTTGCAACCGCAA-AGC 414 Query 112356 AATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTT 112415 || || |||||| | || ||| ||||| ||| | || || || || | || | Sbjct 413 AACCAGAAGAATCTCGGCACTATCCGCAGTTCGAACTTATGCACTGAGATTGTTGAGTAC 354 Query 112416 ACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATC 112453 || | | ||||||| ||||| |||||| | || || Sbjct 353 ACCGCCCCAGATGAGGTTGCTGTCTGTAACTTGGCCTC 316 >seq41695 Length=397 Score = 109 bits (120), Expect = 7e-19 Identities = 116/153 (76%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 102169 GTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTT 102228 |||| || || ||||| || | || |||||| |||||||| || |||||||| || | Sbjct 281 GTTCATTCGCCGAGCGGCTGATTGCGTTTGCGGTCGTTGAGGGGATTTTCTTCTCGGGAT 222 Query 102229 CCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCA 102288 | |||||| | || || ||||| ||||| || ||| | ||||| || || | |||||| | Sbjct 221 CGTTCTGCTCGATCTACTGGCTGAAGAAACGGGGTATGATGCCGGGCCTTTCCTTCTCGA 162 Query 102289 ACGAGCTTATCTCTCGTGACGAGGGACTCCACC 102321 | ||||||||||| || || || || || |||| Sbjct 161 ATGAGCTTATCTCGCGCGATGAAGGGCTGCACC 129 >seq104936 Length=468 Score = 98.7 bits (108), Expect = 1e-15 Identities = 205/295 (69%), Gaps = 13/295 (4%) Strand=Plus/Plus Query 112539 AACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGTTG-AGACTGCTCGTAAATCTAA 112597 ||||| || | | ||||||| | |||| |||||| || ||| | ||||| || Sbjct 4 AACCTGAATAAAATTATTGACATCAATTATTACCCGGTGCCAGAGGCCAAAAAAATCGAA 63 Query 112598 TATGAGACACCGTCCAATTGGTCTCGGTGTCCAA-GGTCTCGCGGATGTATTC-ATTCTT 112655 ||||| || ||||||||||| |||| || ||| || || || |||| |||| | || Sbjct 64 CATGAG-CATCGTCCAATTGGAATCGGGGTGCAAAGGGCTGGCCGATGCATTCCAAATTT 122 Query 112656 TGTCGCCACGCATTTGATTCCGAC-GAAGCGAAGGAAATCAATGCGCGTATATTTGAGAC 112714 || || | | ||||||| || | || || ||| || | ||| | || || ||||| Sbjct 123 TGAGGCTTC-CGTTTGATTTCGCCTGAGGCCAAGAAACTGAATATTCAGATTTTCGAGAC 181 Query 112715 AATGTATCACGCCGCTCTTGAGGCGAGTTCG---GAGTTGGCAGAGGTTGATGGTCCATA 112771 |||||||||| || | ||||| |||| |||||||| | || ||||| || Sbjct 182 TCTGTATCACGCAGCCTTAGAGGC---TTCGAATGAGTTGGCCGTTACGGACGGTCCTTA 238 Query 112772 TGAAACCTTTGAGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGG 112826 ||| ||||| ||| | |||| ||| ||||| | ||||||||||| |||||| Sbjct 239 TGAGACCTTCCAGGCT-CTCCTGCTAGTCAAGGCATTCTTCAATTTGACATGTGG 292 >seq46431 Length=357 Score = 96.9 bits (106), Expect = 4e-15 Identities = 198/293 (68%), Gaps = 6/293 (2%) Strand=Plus/Minus Query 15881 CTTACGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGT 15940 || ||| |||||||| || || || || ||||| ||||| | || || || || Sbjct 290 CTGACGGTCAAAGCGGCCCGGACGCAGCAGCGCAGGGTCAAGTACGTCTGGACGGTTGGT 231 Query 15941 TGCGGCGATGACAACAATACCTGTTTCGTTA---TCAAAACCATCCATCTCTGTCAAAAG 15997 ||||| || || | || ||| |||||| ||||| |||||||| || || | Sbjct 230 CGCGGCAATCACGATGATGCCT---TCGTTACCTTCAAAGCCATCCATTTCAACCAGCAT 174 Query 15998 CTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTGCTT 16057 |||||| | ||||||||| || ||||| | | | |||||||| ||||| Sbjct 173 CTGGTTCAGAGTTTGTTCACGCTCATCGTGACCACCCCCTAAACCAGCACCACGTTGACG 114 Query 16058 TCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTC 16117 || |||||||| |||||||| ||||||| ||||| ||| || ||| ||| Sbjct 113 ACCAACGGCATCGATCTCATCGATGAAGATAATGCACGGTGCCGCTTTCTTAGCCTGTTC 54 Query 16118 AAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGT 16170 ||| | || || || || || ||||||||||| ||||| || ||||||| Sbjct 53 AAACATGTCACGGACGCGGGATGCACCCACACCAACGAACATTTCAACAAAGT 1 >seq51865 Length=821 Score = 91.5 bits (100), Expect = 2e-13 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 102204 GTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGT 102263 || || || ||||||||| ||| || ||| | | || | |||||||||||||| || Sbjct 445 GTGGAAGGAATCTTCTTCAGTGGCTCTTTCGCCTCCATCTTCTGGCTCAAGAAGCGTGGC 504 Query 102264 CTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAA 102323 |||||||| || ||| ||| ||||||||||| ||||| |||||||| || | ||| Sbjct 505 CTCATGCCCGGCCTCACCTTTTCCAACGAGCTCATCTCGCGTGACGAAGGCATGCACACC 564 Query 102324 GAGTTTGC 102331 || ||||| Sbjct 565 GACTTTGC 572 >seq44974 Length=881 Score = 89.7 bits (98), Expect = 6e-13 Identities = 89/112 (79%), Gaps = 4/112 (4%) Strand=Plus/Minus Query 102204 GTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCG--CTATTTATTGGCTCAAGAAGCGAG 102261 || || |||||||||||| |||| |||| ||| |||| | |||||||||||||| | Sbjct 697 GTCGAAGGTATCTTCTTCAGTGGTGCCTT-TGCCTACTATCTTCTGGCTCAAGAAGCGTG 639 Query 102262 GTCTCATG-CCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGG 102312 |||| ||| || || ||| ||||||||||||||| ||||| || || |||| Sbjct 638 GTCTGATGTCCCGGACTCACCTTCTCCAACGAGCTAATCTCCCGCGATGAGG 587 >seq40057 Length=838 Score = 82.4 bits (90), Expect = 9e-11 Identities = 227/348 (65%), Gaps = 0/348 (0%) Strand=Plus/Plus Query 13592 CCGCATCTATCAAGCCTCTTCATCAGAGATGTTTGGTAAGGTTAAGGAGTCACCACAAAA 13651 |||| ||||||| || || | || |||||||| |||||||| ||| | || || | Sbjct 116 CCGCTTCTATCAGGCATCCACTTCGGAGATGTTCGGTAAGGTCCAGGCGATTCCGCAGAT 175 Query 13652 CGAGGAGACACCCTTCTACCCACGCTCGGTCTACGGAGTCTCAAAGGTTGCGGCACATTG 13711 |||| || || ||||| || ||| |||||| || | ||| | || || || Sbjct 176 CGAGAGCACGCCTTTCTATCCGCGCAGCCCCTACGGCGTGGCCAAGCTCTATGCCCACTG 235 Query 13712 GCTCGTAAAGAATTACCGCGAGTCTTACGGACTGTTTGCATGCTCCGGAATCCTCTTCAA 13771 | | | || ||||||||||| ||||| | || | | ||| || |||||||| Sbjct 236 GATGACCATCAACTACCGCGAGTCCTACGGCATCTTCGGCACCAGCGGCATTCTCTTCAA 295 Query 13772 CCATGAATCACCGAGACGAGGTGCAGACTTTGTGACCATGAAGATTACCGAGGGTATCAA 13831 ||| ||||| ||| || || || || |||||| ||||| ||||| | ||| Sbjct 296 CCACGAATCCCCGCTGCGCGGCCGCGAGTTCGTGACCCGCAAGATCACCGACAGCATCGC 355 Query 13832 ACAAATCATGAAGGGTGAAAAGGAGTTCATTGAATTGGGTAACATAAACGCGGAGAGAGA 13891 | |||| | ||| | ||| | | || |||| ||| | |||| || | || Sbjct 356 CAAGATCAAGCTGGGCAAGCTGGACGTACTGGAGCTGGGCAACCTCGACGCCAAGCGCGA 415 Query 13892 TTGGGGTCACGCGAAGGACTATGTTGAAGCTATGTGGCTCATGCTTCA 13939 ||||| ||| ||||| || || || | ||||||| |||||| || Sbjct 416 CTGGGGCTTCGCCAAGGAATACGTCGAGGGCATGTGGCGCATGCTGCA 463 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 619731365816000