Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq19335 141 1e-28 seq54042 86.0 7e-12 >seq19335 Length=805 Score = 141 bits (156), Expect = 1e-28 Identities = 310/461 (67%), Gaps = 14/461 (3%) Strand=Plus/Plus Query 109399 GCCTTCGAGCGAAGATAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATATGC 109458 ||| | | ||| || || ||||| ||||| ||||||||| |||||| | | ||| Sbjct 230 GCCATGGTGCGGAGGTAGTACATGCCCGTCTTGAGACCAAGCTTCCAGCCAGCGAAGTGC 289 Query 109459 ATTGAAGAGAGTTTGGAAAGTGTCGGACTCTCCATAAACAAGTTCATCGACTGAGACTGA 109518 || || | || ||| | || || | ||| | ||| | ||||||||||| Sbjct 290 ATGGAGGTGATTTTTCCCATGGTGGGTTCTTTCATGTGGATGTTGAGGGACTGAGACTGG 349 Query 109519 TCGATGAATCGACCACGATCAGCCGCCATGTCGATGATACACTTTTGGCT----AATTTC 109574 || ||||| ||| || ||||| ||||| | || || || ||| |||||| Sbjct 350 TCAATGAACGCACCGCGGTCAGCGGCCATCTGAATAATG-----TTCGCTGTGAAATTTC 404 Query 109575 CCAGACAGTCTTGTACAAATTCTTGATATCATCGGGAATGTCCACGATGTTTTGAATAGA 109634 ||| || ||||| ||||| |||| | || |||||||| | ||| | ||| || Sbjct 405 CCACACTGTCTTATACAATGTCTTTGTTTCTTCGGGAATATTAGGGATCCTGGCAATCGA 464 Query 109635 GCCACCAGCCTTCACCATGAGATCCTTCATCTCTTTCGACCAGAGACCGACCTTTTTGAG 109694 ||| ||| | | ||| | | ||||| | | ||||| ||||| | | ||| Sbjct 465 GCCGCCATCAGCGATGATGCGGTTTTTCATGTTCTCAGACCATAGACCCATGTCGACGAG 524 Query 109695 ATCGTCAACAAG--ATGCTTGTTGACCACGACAAATTCACCAGCAAGTGTGCGTCGGAGG 109752 ||| | | || ||| ||||||||| ||||||||||||||| || ||| | Sbjct 525 ATCCTTGAGCAGCCATGG--GTTGACCACTTGGAATTCACCAGCAAGTACACGACGGGAG 582 Query 109753 TAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGAA 109812 || ||||| | ||||| || || ||||||||||||||||| ||||| || | || || Sbjct 583 TATATGTTTGAGGTGTATGGCTCAAAACACTCATTGTTGCCCAGGATCTGAGACGTAGAC 642 Query 109813 GCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGAGACC 109853 ||||| |||||||| || ||||||||| ||| |||| ||| Sbjct 643 GCTGT-GGCATGGGTGCAATGAGAAGAGAGTTGCGGACACC 682 >seq54042 Length=500 Score = 86.0 bits (94), Expect = 7e-12 Identities = 197/294 (67%), Gaps = 16/294 (5%) Strand=Plus/Plus Query 11503 CGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCG 11562 || || || || || ||||| || || ||| ||||| | || |||||| || ||| Sbjct 215 CGGTCAAAGCGGCCAGGGCGCAGCAGCGCAGGGTCAAGTACGTCTGGACGGTTGGTCGCG 274 Query 11563 GCAATGACTACAATGCCAGTCTCATTGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTTG 11622 ||||| || | ||||| | | || || || |||||||| || | |||||| Sbjct 275 GCAATCACGATGATGCCTTCGTTACCTTCAAAGCCATCCATTTCAACCAGCATCTGGTTC 334 Query 11623 ATCGTCTGTTCACGCTCATCGTTGGAGGGCATACC-----ACCTGCCGAACGCTTCTTAC 11677 | || |||||||||||||||| | | | || ||| || ||||| || Sbjct 335 AGAGTTTGTTCACGCTCATCGT-----GCCCTCCCCCTAAACCGGCACCACGCTGGCGAC 389 Query 11678 CGACAGCGTCAATCTCATCGATGAATACGATACACGGT--TGGTTGGCACGT-GCCTGTT 11734 | || || || |||||||||||||| | || |||||| | || | | ||||||| Sbjct 390 CAACGGCATCGATCTCATCGATGAAGATAATGCACGGTGCCGCTT---TCTTAGCCTGTT 446 Query 11735 CGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGT 11788 | || | ||||| || || ||| || ||||| |||||||| ||||| |||| Sbjct 447 CAAACATGTCACGGACGCGAGACGCACCCACACCGACGAACATTTCAACAAAGT 500 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588016705340000