Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq41695 131 2e-25 seq97857 118 1e-21 seq57763 89.7 6e-13 seq79110 84.2 3e-11 seq40057 82.4 9e-11 >seq41695 Length=397 Score = 131 bits (144), Expect = 2e-25 Identities = 126/162 (78%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 117273 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCC 117332 ||| || || |||| || || ||||| || || ||||| ||||| |||||| | ||||| Sbjct 118 GGCGAAATCGCGGTGCAGCCCTTCATCGCGCGAGATAAGCTCATTCGAGAAGGAAAGGCC 177 Query 117333 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGAT 117392 ||||| | |||||| ||||||| ||| || || | |||||| || || |||||||| || Sbjct 178 CGGCATCATACCCCGTTTCTTCAGCCAGTAGATCGAGCAGAACGATCCCGAGAAGAAAAT 237 Query 117393 ACCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGA 117434 ||||| || ||||||||||| || ||||||||||| || Sbjct 238 CCCCTCAACGACCGCAAACGCAATCAGCCGCTCGGCGAATGA 279 >seq97857 Length=911 Score = 118 bits (130), Expect = 1e-21 Identities = 311/468 (66%), Gaps = 5/468 (1%) Strand=Plus/Plus Query 106456 TGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAA 106515 ||| || || | || ||||| || || ||||| |||||| | |||||||| | Sbjct 303 TGGCAGTGCTAGAGAGGCCAAGTTACAGACAGCAACCTCATCTGGGGCGGTGTACTCAAC 362 Query 106516 AATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTT 106575 ||| || || || ||||| ||||| || || || | |||||| ||||| || || Sbjct 363 AATCTCAGTGCATAAGTTCGAACTGCGGATAGTGCCGAGATTCTTCTGGTTGCT-TTGCG 421 Query 106576 GTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAAT 106635 |||||| || |||||||| |||||| |||| | || ||||| || || | || ||| || Sbjct 422 GTTGCAAGCGTCCTTGTAAAGCATGAAGGGATTACCAGTCTCAGTTTGAGCCTCGAGGAT 481 Query 106636 TGCCTTCCACACATCGGCGGCTGGTACAATGGCGTTGGCCCGTCC-CTCCGCCTCGTACT 106694 || | | | | || | ||| | || | | | || | || ||| || Sbjct 482 GGCATACGAG-CTTCTG-GGCGCGAACGGTCTCAC-GACCTTTGTTCTTTTTCTCATAAC 538 Query 106695 TTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTG 106754 || ||||||||| |||||||| ||||| |||| | |||||| || || || | Sbjct 539 TTTCGTAGAGGGCCTCAAACTCATCACCGTAGACGTCCGCGAGACCAGGACACTCGTTGG 598 Query 106755 GACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCC 106814 |||| | |||| ||| | ||| ||| | || ||||||||||| || || || |||| Sbjct 599 GACACATCAGAGTCCACTCCCCATTCTCTTGGACACGCTTCATGAAGAGATCCGGGATCC 658 Query 106815 ACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACT 106874 |||||| | || | || | | ||| | || || | || ||||| || | | Sbjct 659 ACAGGGCGTAGAATAAGTCGCGAGCGCGAACTTCCTCTTTGCCATGGTTCTTACGAAGGT 718 Query 106875 CAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGA 106922 | | ||| | | ||||| |||||||||||||| || |||| ||||| Sbjct 719 CCAAGAAGCCAAATATATCGGCGTGCCATGGCTCGAGGTAGATTGCGA 766 >seq57763 Length=521 Score = 89.7 bits (98), Expect = 6e-13 Identities = 133/186 (72%), Gaps = 2/186 (1%) Strand=Plus/Minus Query 6906 TATCAAGCCTCTTCCTCAGAGATGTTTGGTAAGGTTAAGGAGTCACCACAAAACGAGGAG 6965 || || |||||| |||| |||||||||||||||||| |||| ||||| || ||| Sbjct 438 TACCAGGCCTCTACCTCGGAGATGTTTGGTAAGGTTCAGGAAATCCCACAGAAAGAGTCA 379 Query 6966 ACACCCTTCTACCCACGCTCGGTC-TACGGAGTCTCAAAGGTTGCGGCACATTGGCTCGT 7024 || |||||||| || || | | | || || || |||| | || || ||| | Sbjct 378 ACGCCCTTCTATCCGCG-TAGTCCTTATGGTGTGGCAAAACTCTATGCGCACTGGATGAC 320 Query 7025 CAAAAATTACCGCGAGTCTTACGGACTGTTTGCGTGCTCCGGAATCCTCTTCAACCATGA 7084 | ||| || || ||||| || || | ||||| |||||||| || |||||||| ||||| Sbjct 319 GATAAACTATCGTGAGTCCTATGGTATTTTTGCCTGCTCCGGGATTCTCTTCAATCATGA 260 Query 7085 ATCACC 7090 ||| || Sbjct 259 ATCGCC 254 >seq79110 Length=913 Score = 84.2 bits (92), Expect = 3e-11 Identities = 140/200 (70%), Gaps = 2/200 (1%) Strand=Plus/Minus Query 107112 CATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCG 107171 |||||||||| | || ||||||||| || | || || |||||| |||||||||| Sbjct 908 CATAGATACCATCAATGCTGTCCTCCTTCATGTCAATCAGAAAGCAAGATGACATCTGCG 849 Query 107172 GTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATAC-CTTGGGAC 107230 | || || || || ||||| || ||||| | || ||| | || ||| ||| ||| Sbjct 848 GCGAAGGGGTGCCGGCGTTGAAAAGCGTTGGGGAGGCATGAGT-AAAGTACTTTTGTGAC 790 Query 107231 ATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACA 107290 || | |||||| || || | | | || || || || ||||| || |||| || ||| Sbjct 789 ATGTAGTCGTACGTTTCGATGGCCTTTTCGATATCCTCGCCGTGAATACCGACAGCGACA 730 Query 107291 CGCATAAACATGTATTGGGG 107310 ||||| | ||||| ||| || Sbjct 729 CGCATGATCATGTGTTGTGG 710 >seq40057 Length=838 Score = 82.4 bits (90), Expect = 9e-11 Identities = 227/348 (65%), Gaps = 0/348 (0%) Strand=Plus/Plus Query 6899 CCGCATCTATCAAGCCTCTTCCTCAGAGATGTTTGGTAAGGTTAAGGAGTCACCACAAAA 6958 |||| ||||||| || || | || |||||||| |||||||| ||| | || || | Sbjct 116 CCGCTTCTATCAGGCATCCACTTCGGAGATGTTCGGTAAGGTCCAGGCGATTCCGCAGAT 175 Query 6959 CGAGGAGACACCCTTCTACCCACGCTCGGTCTACGGAGTCTCAAAGGTTGCGGCACATTG 7018 |||| || || ||||| || ||| |||||| || | ||| | || || || Sbjct 176 CGAGAGCACGCCTTTCTATCCGCGCAGCCCCTACGGCGTGGCCAAGCTCTATGCCCACTG 235 Query 7019 GCTCGTCAAAAATTACCGCGAGTCTTACGGACTGTTTGCGTGCTCCGGAATCCTCTTCAA 7078 | | || || ||||||||||| ||||| | || | | ||| || |||||||| Sbjct 236 GATGACCATCAACTACCGCGAGTCCTACGGCATCTTCGGCACCAGCGGCATTCTCTTCAA 295 Query 7079 CCATGAATCACCGAGACGAGGTGCAGACTTTGTCACAAAGAAGATTACCGAGGGTATCAA 7138 ||| ||||| ||| || || || || || || ||||| ||||| | ||| Sbjct 296 CCACGAATCCCCGCTGCGCGGCCGCGAGTTCGTGACCCGCAAGATCACCGACAGCATCGC 355 Query 7139 ACAAATCATGAAGGGTGAAAAGGAGTTCATTGAATTGGGTAACATAAACGCGGAGAGAGA 7198 | |||| | ||| | ||| | | || |||| ||| | |||| || | || Sbjct 356 CAAGATCAAGCTGGGCAAGCTGGACGTACTGGAGCTGGGCAACCTCGACGCCAAGCGCGA 415 Query 7199 TTGGGGTCACGCGAAGGACTATGTTGAAGCCATGTGGCTCATGCTTCA 7246 ||||| ||| ||||| || || || | |||||||| |||||| || Sbjct 416 CTGGGGCTTCGCCAAGGAATACGTCGAGGGCATGTGGCGCATGCTGCA 463 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589019868772000