Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_015157.1 Length=125956 Score E Sequences producing significant alignments: (Bits) Value seq27013 143 2e-29 seq56781 136 3e-27 seq57034 125 6e-24 seq33499 84.2 2e-11 >seq27013 Length=32742 Score = 143 bits (158), Expect = 2e-29 Identities = 506/770 (66%), Gaps = 63/770 (8%) Strand=Plus/Plus Query 103896 CAACCTTTGAATTAGAATATCCCCGCTTCATTCACAGTGAGTTGATGACACATCGCCTAT 103955 |||| |||||| | |||| ||| | |||||| | || || ||||| || || ||| Sbjct 8605 CAACATTTGAACTGACTTATCACCGATATATTCACGGGGAATTTATGACTCACCGTTTAT 8664 Query 103956 TCTCACGTAATGCTATGAGTAGTCGTGCAGTTCCGGTTAGTAAAATGATTGAACAAGTTC 104015 | |||||||| |||||| |||||| || || || ||||||| |||| | | Sbjct 8665 TTAGCCGTAATGCAATGAGTTCTCGTGCGGTCCCTGTGGCTAAAATGCTTGACATTATCC 8724 Query 104016 G-CAATAATCCAGCTACACCGATTCATTGGGGTAAAAATCAATCAGGTATGCAAGCTAAA 104074 | |||| | ||||| | || |||||||||||||| || ||| |||||||||| || ||| Sbjct 8725 GTCAATCA-CCAGCAATGCCTATTCATTGGGGTAAGAACCAACCAGGTATGCAGGCAAAA 8783 Query 104075 ACTGAACACA---CAGAGGATGT-GTTA--GATAATACAGGAGAAGCTT----TTTCTGT 104124 || || |||||| | | ||| || || || || || | | | | Sbjct 8784 GAAGATCATGATGCAGAGGTTATCGTTTCTGACTATGATGGTGACAATTGGCCTATGTCT 8843 Query 104125 ACAAGATTGG---TGGTATTTATCTGCGGAAGAAGCAGCTA-GTTCGGCAGAG-GCTATG 104179 | |||| || |||||||| | | || || | || | ||| || ||| Sbjct 8844 A-AAGAAGGGGCTTGGTATTTGGCAA-GTAATCAGTCGGTAAGAATGGCCGAATGCTTCT 8901 Query 104180 GAAGAAGCGGGGTATCATAAGCAAATTGTGAATCGATTACTAGAACCATTCCAAATGATG 104239 | | || || ||||| || || |||||||| || || | ||||| ||||| |||||| Sbjct 8902 CTA-ATGCAGGTTATCACAAACAGATTGTGAACCGCTTGGTTGAACCTTTCCAGATGATG 8960 Query 104240 AAGACAGTTTTAACAGCAACAGAATTTTCTAATTTCTTTTGGTTGCGTCTAGATGAAGAC 104299 || || || | ||||||||||| | ||| ||||| ||||||||| | || ||||| Sbjct 8961 AAAACTGTGATGACAGCAACAGAGCTGGATAACTTCTTCTGGTTGCGTTTGGACGAAGAT 9020 Query 104300 GCACAACCTGAGATTCACGAACTTGCATTGTGTATGAAA-TCTGCTTACGATGAGTCTTA 104358 ||||| ||||||||| ||| | ||| || |||||| || || ||| || | | Sbjct 9021 GCACAGCCTGAGATTTTTGAATTAGCACGTTGCATGAAAGAATGTCTA-GATAAGACGGA 9079 Query 104359 CCCAGAAGAGTTAGT---ATCTGGTGAGTGGCACACCCCTTATATAGA--GCATTACCGA 104413 || ||||||| | | |||| || |||||||| || ||| |||| ||||| || Sbjct 9080 GCC---AGAGTTACTTCAACCTGGAGAATGGCACACACCGTATGTAGATCACATTA-AGA 9135 Query 104414 T--ATGAAGATGGTCTGAAATATGGCGTAGAAGATTCTGAAGGGTACACA---------- 104461 | || || | | ||| | || | ||| | | | | || || ||| Sbjct 9136 TTCATAAACA---GCCAAAAAAGGGTGAAGAGGCTACAGGAGACTATACATTCAAGTATC 9192 Query 104462 -------CGA--TTCA-----TAACTGCAGAAGAAGCTATTGCAATTTCATCATCTTGTT 104507 ||| | | |||||| ||| |||||| | || |||||||| || |||| Sbjct 9193 TTAGCTCCGAAGGTAAAGAATTAACTGAAGAGGAAGCTTTAGCCATTTCATCTTCATGTT 9252 Query 104508 GTGCGCAAGTCTCATACCGAAATATTGATAATAGTTTTGAGAAAGCTATGAAAGTGTATG 104567 |||| ||||| || ||||| ||| |||||| ||| | ||||||||||||| || | || | Sbjct 9253 GTGCTCAAGTATCTTACCGTAATCTTGATAGTAGATATGAGAAAGCTATGGAAATTTACG 9312 Query 104568 AACGTCTTGGTGTCGGTGGTAGTAAGATACACGCTTCCCCCTTCGAGCAT 104617 | ||| || ||||| |||| | ||||| || || || || ||| Sbjct 9313 GTAG-ATTGTTG--AGTGGTGGTAAAGTCCACGCATCTCCATTTGAACAT 9359 >seq56781 Length=1399 Score = 136 bits (150), Expect = 3e-27 Identities = 321/477 (67%), Gaps = 42/477 (9%) Strand=Plus/Plus Query 104183 GAAGCGGGGTATCATAAGCAAATTGTGAATCGATTACTAGAACCATTCCAAATGATGAAG 104242 || || || |||||||| || |||||||| || || | ||||| ||||| ||||||||| Sbjct 53 GACGCTGGCTATCATAAACAGATTGTGAACCGTTTGGTCGAACCGTTCCAGATGATGAAG 112 Query 104243 ACAGTTTTAACAGCAACAGAATTTTCTAATTTCTTTTGGTTGCGTCTAGATGAAGACGCA 104302 || || | |||||||||||| | ||| ||||| ||||| ||| |||||||||| ||| Sbjct 113 ACTGTCATGACAGCAACAGAACTGGATAACTTCTTCTGGTTACGTTTAGATGAAGATGCA 172 Query 104303 CAACCTGAGAT-TCACGAACTTGCATTGTGTATG-AAATCTGCTTACGATGAGTCTTACC 104360 |||||||| || ||| | || ||||||| | || ||| ||| | | | Sbjct 173 CAACCTGAAATAATTTGAATTAGCCAAGTGTATGCAGGAATGTTTATTGAAAGT-TAAAC 231 Query 104361 CAGAAGAGTTAGTATCTGGTGAGTGGCACACCCCTTATATAGA--GCATTACCG---ATA 104415 ||||| | | | || ||||||||||||| || ||| |||| ||||| | ||| Sbjct 232 CAGAAAAACTTAAACCTAGTGAGTGGCACACACCATATGTAGACCACATTAAGGTTTATA 291 Query 104416 ---------------TGAAGATGGTC----TGAAATATGGCGTAGAAGA-----TTCTGA 104451 |||||| || | | |||||| | || | ||| || Sbjct 292 AGCAACCAAAAAAGGTGAAGA-GGACACAGGGGAATATGTACTTAAATACCTAGTTCCGA 350 Query 104452 AGGGTACACACGATTCATAACTGCAGAAGAAGCTATTGCAATTTCATCATCTTGTTGTGC 104511 ||| || | || ||||| |||||||||| | ||||| || || ||||||||||| Sbjct 351 AGG---CAAAGAAT---TAACTAAAGAAGAAGCTTTGGCAATCTCTTCTTCTTGTTGTGC 404 Query 104512 GCAAGTCTCATACCGAAATATTGATAATAGTTTTGAGAAAGCTATGAAAGTGTATGAACG 104571 |||||||| || || || ||||||| | | ||| ||||| ||| | | |||| ||| Sbjct 405 TCAAGTCTCTTATCGTAACCTTGATAACACATATGAAAAAGCAATGGCAATTTATGGACG 464 Query 104572 TCTTGGTGTCGGTGGTAGTAAGATACACGCTTCCCCCTTCGAGCATGTGGCAAAACC 104628 | || || ||||| || | |||||||| || || || ||| ||||| ||| Sbjct 465 T-TTACTG--AGTGGTGCCAAAGTCCACGCTTCACCTTTTGAACATCAGGCAACACC 518 >seq57034 Length=296 Score = 125 bits (138), Expect = 6e-24 Identities = 160/218 (73%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 104182 AGAAGCGGGGTATCATAAGCAAATTGTGAATCGATTACTAGAACCATTCCAAATGATGAA 104241 ||| || || ||||| ||||| ||||||||||| | | ||||||||||| |||||||| Sbjct 277 AGATGCTGGATATCACAAGCAGATTGTGAATCGTCTTGTTGAACCATTCCAGATGATGAA 218 Query 104242 GACAGTTTTAACAGCAACAGAATTTTCTAATTTCTTTTGGTTGCGTCTAGATGAAGACGC 104301 ||| || | || ||||| || || ||||||||| ||| | || | ||| ||| || Sbjct 217 GACCGTCATGACTGCAACCGAGCTTGATAATTTCTTCTGGCTACGCTTGGATACAGATGC 158 Query 104302 ACAACCTGAGATTCACGAACTTGCATTGTGTATG-AAATCTGCTTACGATGAGTCTTACC 104360 |||||||||||| |||||||||| |||||| || ||| || | ||| | | Sbjct 157 ACAACCTGAGATCTACGAACTTGCTCGTTGTATGCGGGAGTGTTTA-GAGAAATCTGAAC 99 Query 104361 CAGAAGAGTTAGTATCTGGTGAGTGGCACACCCCTTAT 104398 | ||| |||| |||| ||||||||||| |||||| Sbjct 98 CTGAACTGTTACAGCCTGGGGAGTGGCACACACCTTAT 61 >seq33499 Length=26748 Score = 84.2 bits (92), Expect = 2e-11 Identities = 93/118 (79%), Gaps = 7/118 (6%) Strand=Plus/Minus Query 40373 GCTGATTGTCCAATCCTTTTGATTTTCAAGCATTCACGCTCAGGCTTATTTCATCCTCAC 40432 ||||||| |||||||||| |||||||||||||||||||| || ||||| |||| Sbjct 14177 GCTGATTACCCAATCCTTTCACTTTTCAAGCATTCACGCTCA-CCT--TTTCA-AGTCAC 14122 Query 40433 GTTGTAGCTCAAAAGGCTATAAGGGTTTTCCAGCAATTAAGT--AAGTTTATACTGAG 40488 |||||||| ||||||| |||||| || ||||||||| | | | ||||| ||||| Sbjct 14121 GTTGTAGC-AGAAAGGCTCTAAGGGCTTCCCAGCAATTCAATTCATTTTTATTCTGAG 14065 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 402294527581100