Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_015158.1 Length=49675 Score E Sequences producing significant alignments: (Bits) Value seq28764 259 2e-64 seq35356 199 1e-46 seq72771 185 3e-42 >seq28764 Length=21750 Score = 259 bits (286), Expect = 2e-64 Identities = 727/1093 (67%), Gaps = 51/1093 (5%) Strand=Plus/Plus Query 18815 GGTTTTACCGCAATCTCTACAGCAGAAGCTAGAGCGTCTTTCAAGTCATCATGAGGTGGA 18874 ||||| | ||| || ||||||||| || || || || | ||||| || | ||| Sbjct 525 GGTTTAATCGCTATAGATACAGCAGATGCCAGGCTATCCTTAACATCATCGTGGGCCGGA 584 Query 18875 CGAGCCAACACAAGTTCTTCCTCAAGCATTGGAGTGTAACCACCTTTTCTATGCCACATA 18934 ||||| || || ||||| || || | || ||||| || |||| ||||||||| Sbjct 585 CGAGCTTGCATCAGCTCTTCTTCCAGGACAGGGGTGTACCCCCCTTCGAAATGCCACATC 644 Query 18935 ATACCT-TGCTCATACCGTGGTTCCAATACAGCAGCCATACGTTCTTCCTTAGAACCAAG 18993 | | | | |||||| || ||||||| | || || ||||| || || |||||||| Sbjct 645 -TGCATATTCTCATATCGACTTTCCAATGCTGCTGCAATACGCTCCTCTTTAGAACCTT- 702 Query 18994 CGCCTTAGTTGGT-CGAAACTCGTCGATACTAATAGTC--ATGCCTTC---CTTGCGTAA 19047 || | | ||| || | || || | || ||| | || ||||| |||| || Sbjct 703 CGTGTCGGCTGGGACGGTATTCATCAA--CTGATATCCCCATACCTTCTTTCTTGATAAA 760 Query 19048 CTTCTCTTTAATATCGTTTACAATGATTTGCTGTGCCACAGTAACCTCGGCACGGAGTTT 19107 | |||| ||||||||||| |||||||| ||||| ||||||||||| || || | || Sbjct 761 AT---CTTTGATATCGTTTACTATGATTTGTTGTGCAACAGTAACCTCAGCTCGCAACTT 817 Query 19108 CTTAAATTCCCACTTACTATGCAAAGCAGAG--ATATGGTCATAGTAATCATTAATCTTA 19165 |||||| | ||| | ||| |||| | | || || | |||| ||| | || || Sbjct 818 CTTAAAGTGCCATCTTGAATG--AAGCTGGGCAATGTGTTTGAAGTATTCAATTGTCCTA 875 Query 19166 TCTGTCTTGAATCGGTCAATATCCAAAACGTAGATGTAACCTTCTGAATCAATCCCAATA 19225 ||||| ||||| ||||| || ||||| || ||||| | | || ||||||||||| ||| Sbjct 876 TCTGTTTTGAAACGGTCGATGTCCAATACATAGATATTAGAATCAGAATCAATCCCTATA 935 Query 19226 ACAACGATTGCTGTAAAGTCGGCCTTCTTAGATAAACTAAATGCAAAGTCCACAGCAGCA 19285 |||||||||| || |||| || || ||||||||||||||||||||||| |||||| Sbjct 936 ACAACGATTGAGGTGTAGTCAGCAGATTTTGATAAACTAAATGCAAAGTCCACCGCAGCA 995 Query 19286 AAGATATTCAAAGGTCTGTCCTTAAA---CCAGTATCTACCTTCCCGATAGGTAACG--A 19340 ||| ||| | | | || ||| | ||||| | || || |||||| | Sbjct 996 TAGACATTAAGCCTTTTATCTTTATAATGCCAGT---TGCCATC-------GTAACGCAA 1045 Query 19341 AT--TTCTCATCGTAGTATTGGAAACTGCTATAGTTCAA-ACGTGCTGATTCTGGGTCGT 19397 || | | || | |||| |||| | | | | || || ||||| | ||||| | Sbjct 1046 ATGCCTTTGGTCAAAATATT-GAAAGCGGTCAACTGAAATTCGAGCTGAGCCAGGGTCAT 1104 Query 19398 TTGGGTCATTGTAGTACTGAGCAAAGAACTGAACACGGTCAACGTATTTAGCTTTCTTCT 19457 | |||||||| ||||||||||| || || || || | || | |||| | | Sbjct 1105 TAGGGTCATTATAGTACTGAGCGTGAAATTGCACTTTATCGATATACTCAGCTCTAATGC 1164 Query 19458 TAGCCAGAACACGGTTATCAAAACCAAACTTCTTACCATCAGAACCACGAGAAGTACGAG 19517 || | |||| |||||||||| || ||||||||| |||||| ||| | || Sbjct 1165 GTGCTAAGACACCCATATCAAAACCGAATGCCTTACCATC---ACCACGTATAGTTCTAG 1221 Query 19518 GCCACAAGAATACACCATCTTCTTCTACAACACGCTCAAAAATATCCCAAACAGGTCTTT 19577 |||| | ||| |||||| |||||| || | || |||||||| ||||| | Sbjct 1222 GCCATATGAAGCGCCCATCTCGTTCTACGGCATGTTCTCGTATATCCCAGACAGG--CAT 1279 Query 19578 CCTCTCCAGTCTCTTCTCCATGTTCGTCGAATACGGGTTGATG-CTGATTCTTCCATGTG 19636 ||| || | | |||| | || || | || | ||| ||| | ||||| || Sbjct 1280 CCTATCTA-ACAACACTCCGTCATCATCATACACTTCAT-ATGTCTGGGTTTTCCAAGTA 1337 Query 19637 TCGTAAATATCAGCAGGATGATACCGAGTACCACAAGCTTTAACAATACCATCAGCGTTT 19696 ||||||||||| ||||| || ||||| ||||| ||| | || ||| |||| ||| Sbjct 1338 TCGTAAATATCTCTTGGATGGTAACGAGTGCCACATGCTAAAGTAAATCCACCAGCATTT 1397 Query 19697 AGGATAGATTCCATCTGAGA---CATAGCAGCAGCTACCTTGCGTCTACCATCCTCAGTA 19753 | ||||| | |||||| | | | | | ||| || ||| || ||| Sbjct 1398 CGAATAGAAGTAAACTGAGAGGCCTTTTTACTAACATCCTCACG---ACCCCGTTCTGTA 1454 Query 19754 TATGCGTTATCTGGAACTACAACGTCATCAGAAATAATAACATCAGCGTGCCAACCAGTG 19813 |||||||| || ||||| || | |||||| || | || ||||| || ||||| |||||| Sbjct 1455 TATGCGTTCTCAGGAACCACTAAGTCATCGGATACGATTACATCTGCATGCCATCCAGTG 1514 Query 19814 GTGTTAGTGGTGAGGCCAGCAGTCTTAATAGTAAAGTCTCGGACGCCTTCCATCTTACGT 19873 |||||||| || | || || || ||| ||| ||||| || || || || ||||| Sbjct 1515 GTGTTAGTTGTTAATCCTGCTGTAGCAATTGTAGCATCTCGAACTCCCTCTTTCCTACGT 1574 Query 19874 TTTGGGTGGTCAA 19886 | || ||||||| Sbjct 1575 TGGGGATGGTCAA 1587 Score = 109 bits (120), Expect = 2e-19 Identities = 126/168 (75%), Gaps = 4/168 (2%) Strand=Plus/Plus Query 18448 CTTCCCACTTCAACCACCGTTCATTTGGAAACAATGCACTAATGTAGTTGGAGTGTAAGT 18507 ||||||| ||| ||| ||||| || ||||||||| |||||||| || ||||||| Sbjct 132 CTTCCCATCTCATCCAAGAGTCATTAGGGAACAATGCAGAGATGTAGTTAGAATGTAAGT 191 Query 18508 TATCTCGAATCTGACACAACTTAGGTAAAGTAGTTTTGTTCTTCCACGGTAACGTGCT-- 18565 |||| ||||||||||| | |||||| | || || ||||||||| || | ||| | Sbjct 192 TATCCCGAATCTGACAAAGCTTAGGGATTGTTGTGGAGTTCTTCCAAGG--AAGTGATTG 249 Query 18566 GTTAGTCGTAGTAGTGGTATCAGTAGCAAAGATGTAGTTACGTAGTTC 18613 |||| | ||||| | || || |||||||| || || ||||| ||||| Sbjct 250 GTTACTTGTAGTGGAAGTGTCCGTAGCAAAAATATAATTACGAAGTTC 297 >seq35356 Length=5999 Score = 199 bits (220), Expect = 1e-46 Identities = 470/696 (68%), Gaps = 48/696 (7%) Strand=Plus/Plus Query 17180 AACTGGAGTATTAGCAATA---CCCATTAGGCTTTGTACTACTTGCGCTTGTTCTGCAAA 17236 |||| | | |||||||| ||||||| | | || | |||| ||||||| ||||| Sbjct 5258 AACTTGCGGATTAGCAAACACTCCCATTAAGTTCTGCAAGTCTTGAGCTTGTTTAGCAAA 5317 Query 17237 GTGTCGAGCACCTACAGGACGTAGACGACCTTTTGCTGTAATATCGTCTTTGTTAA---C 17293 || |||||||| || ||||| | || ||| ||||||||||| | ||| | | | Sbjct 5318 ATGACGAGCACCAACTGGACGAATGCGTCCTGCCGCTGTAATATCTTGTTTAGTGATTTC 5377 Query 17294 GTTCATGAAGGTTGCCACTTTATCATCAGAGTCAAACACACGAATGGTATCAGCTACGTC 17353 | | ||| ||| | |||||| ||||| || ||||| ||| | | || Sbjct 5378 TTGGAAGAACTGCGCCCCCAGCTCATCA---TCAAATACTCGAATTACATCCATTCCATC 5434 Query 17354 TAAATTACGACGAGAAATCTCTAACATCGCATTCAGAACC--TTCT-CCATCAACATTAC 17410 | ||| |||||||| | || | ||| ||||| ||||| |||| |||| ||| Sbjct 5435 CATATTGCGACGAGAGGTTTCAAGCATTGCATTAAGAACAGGTTCTACCATTTCAATT-- 5492 Query 17411 TTCAAAGTTCATAATCTTCTCTTGGAAGATACGGCCAGCGGCGTTTTGAAGTTGTTGAAC 17470 |||||||| |||||||||||||||| ||||| ||| | || || ||||| |||||||| Sbjct 5493 -TCAAAGTTGGTAATCTTCTCTTGGAAAATACGACCACCAGCATTCTGAAGCTGTTGAAC 5551 Query 17471 CTCGAATGCTGTTTTCTCACCGGGAGTACGAATACCCATAGCTTCACGAGGAGCACCTGC 17530 || || || |||||||| || |||| |||||| |||||||||||||||||||||||||| Sbjct 5552 TTCAAAAGCAGTTTTCTCTCCAGGAGAACGAATCCCCATAGCTTCACGAGGAGCACCTGC 5611 Query 17531 AAACTCTTCCATCTTAGCTTCAAGAATCTGAATCTGC-ATATC--TGCTTGTAGA----- 17582 || |||||| ||| || |||| || || || || | | ||| Sbjct 5612 GTACATTTCCATACGCTGTTCTAG---CTGA----GCGATTTCGTTGTTAGCAGACACTA 5664 Query 17583 -GC--TTGAGTGTTAGGAGCCATCATCT-CTACATCA------CCATCACCATTGATGTA 17632 || ||||| ||| | ||| ||| |||| || || || ||| ||||| Sbjct 5665 CGCCATTGAG-GTTCTTA-CCAAGCTCTGTTACAGCAGATTGCCCCACATCATCAATGTA 5722 Query 17633 AATCTGTTCCATTGGTCCCCAAACAAACTCCTCAACATCACCTT---TAACCTTCATTGG 17689 || | | ||| | || |||| ||||| ||||| || | | || |||||| Sbjct 5723 GATGCGGCCTCCTGGCTCGTAATCAAAATCCTCGACATCTCCCTGAATTACAAGCATTGG 5782 Query 17690 AGGAAACGCGATTAGGTCAAACACGTCAGCTTTCAAGTTCTCAAGGTGGTCGATACGATA 17749 | | | || || ||| | | || ||||| | ||| || |||||||| |||||||| Sbjct 5783 ATGCACAGC---TAAGTCCATAGCATCCGCTTTGAGGTTTTCTAGGTGGTCAATACGATA 5839 Query 17750 TTGCATACCTACTAGGTTATCTAGTGGTCCCATAGCGTACAGGTTATCTTGACGAATACG 17809 |||||| || || | |||||| || || |||||||| | ||||| || ||| | ||| Sbjct 5840 TTGCATTCCCACCAAGTTATCCAGAGGCCCCATAGCCCAGAGGTTGTCAGTACGGAAACG 5899 Query 17810 CCAACCACAATGGAAGATTGGAGCTTGTGCAAACCA 17845 ||| || |||||||| |||| | ||||||| Sbjct 5900 CCAGCCTACATGGAAGAACGGAGATGTACCAAACCA 5935 Score = 149 bits (164), Expect = 2e-31 Identities = 368/550 (67%), Gaps = 14/550 (3%) Strand=Plus/Plus Query 15334 ATTCAGAGTTGCCTCAACGATTGGGTCAACAATCAGAATACGACCACCTAGTGGAACGTT 15393 |||||| || || || |||||||||||| |||| | | ||| || || ||||||||| Sbjct 3330 ATTCAGGGTAGCTTCTACGATTGGGTCAGCAATGAACACACGGCCTTCTGCTGGAACGTT 3389 Query 15394 CGCCTTGTCAGCAGCAAGTTTCAGGTAAATCAAGTCTTCTAGTTCGATAGTCTTGTTAGT 15453 ||||| || ||||| || ||| | | | || || | ||||| || Sbjct 3390 AGCCTTATCGAATGCAAGACGCATAGCAATGAGCTGTGACAGGCTGAAAACGTTGTTGGT 3449 Query 15454 ACCTGTAG---CGATACGCTTGTGAGCAAAGCCGTTAATCTCGTTAGCATCAGCAGCAGT 15510 | || | ||||||| ||| ||||||||||| || ||||| | || || Sbjct 3450 TTCAGTGGAGGCGATACG---GTGCGCAAAGCCGTTGATGGTGTTAGGGTTGGCGTTTGT 3506 Query 15511 TAGACCTTCGTAAGCTACTTGT--AGATAGCGAGTTTCAAAGTCTTCTTGCATCGCACGA 15568 ||||| ||| ||| | | | ||| || ||||||||| |||| || || |||||| Sbjct 3507 CTGACCTGCGTTAGC-AGTAGCCAAGA-AGGTAGTTTCAAACACTTCCTGAATAGCACGA 3564 Query 15569 GTAGACTCTTGAGCACGCATTGCCATCAGAGTTTCGATTTGAGCACCGTCTTGACGTAAT 15628 ||| || || ||| |||||||||| || || |||||||| |||| | Sbjct 3565 GTACCTTCGATAGAGCGCTGAGCCATCAGAGCATCAATCTGAGCACCATCTTCTTTCAGG 3624 Query 15629 TTGTCAGTAACAGACCAAGCATCGCCTTTGTAGTCAGTAATACGCATCTGTACGTTACCA 15688 | ||||| ||| |||| ||||| ||||| || | ||| || | |||||| | ||| Sbjct 3625 TCATCAGTTACATACCATGCATCACCTTTATACTGAGTGATGGTGAGCTGTACTTCACCT 3684 Query 15689 GTCTCGATTGGGTTGTAGATTAGTGGAGTTTCTTCTTCCACATCCTGAATAGTTACCGTA 15748 | || ||||||||||| || || ||| |||||| || |||||||||||||||| | | Sbjct 3685 GATTCAATTGGGTTGTAAATCAGAGGAACGTCTTCTGCCGCATCCTGAATAGTTACAGAA 3744 Query 15749 CCAACAGTTTTAATGTTTAGCACTTCACCAGCAGGAAAATCTGAGACGTTACGATACATC 15808 |||| ||||| |||| || ||| | | || || | || || ||||| | Sbjct 3745 CCAATTGTTTTGATGTGGAGGGTAGTACCTGAACCGAAGTCAGTTACATTGCGATAGA-- 3802 Query 15809 ATTGCT-GGCAAG-AAACCATCGTGTAGGTTTTCCAGAATGAATTTTGAATATTGTTGAG 15866 | |||| |||| | ||||||||| ||||| |||||| || |||||| |||| | Sbjct 3803 ACTGCTCACCAAGCAGACCATCGTGCAGGTTCATCAGAATAAAAGATGAATACTGTTCTG 3862 Query 15867 CCTCAATAAA 15876 | || || || Sbjct 3863 CTTCGATGAA 3872 >seq72771 Length=649 Score = 185 bits (204), Expect = 3e-42 Identities = 251/347 (72%), Gaps = 6/347 (2%) Strand=Plus/Minus Query 17199 CCCATTAGGCTTTGTACTACTTGCGCTTGTTCTGCAAAGTGTCGAGCACCTACAGGACGT 17258 ||||||| | | || | |||| || || | |||||||| |||||||| |||||||| Sbjct 442 CCCATTAAGTTCTGCAAGTCTTGAGCCTGCTTAGCAAAGTGACGAGCACCAACAGGACGA 383 Query 17259 AGACGACCTTTTGCTGTAATATCGT-CTTTGTTAA--CGTTCATGAAGGTTGCCACTTTA 17315 | ||| || ||||||||||| | ||| || | | | | ||| ||| | Sbjct 382 ATACGTCCAGAAGCTGTAATATCTTGCTTAGTGATTTCCTGGAAGAACTGTGCTCCCAGC 323 Query 17316 TCATCAGAGTCAAACACACGAATGGTATCAGCTACGTCTAAATTACGACGAGAAATCTCT 17375 |||||| ||||| || ||||| ||| | | || | |||||| |||| | | || Sbjct 322 TCATCA---TCAAATACTCGAATTACATCCATTCCATCCATATTACGTCGAGCAGTTTCC 266 Query 17376 AACATCGCATTCAGAACCTTCTCCATCAACATTACTTCAAAGTTCATAATCTTCTCTTGG 17435 | ||| ||||| ||||| || | || | ||||||||| | || ||||||||| Sbjct 265 AGCATTGCATTAAGAACAGGTTCAACCATTTCAATTTCAAAGTTTGTTATTTTCTCTTGG 206 Query 17436 AAGATACGGCCAGCGGCGTTTTGAAGTTGTTGAACCTCGAATGCTGTTTTCTCACCGGGA 17495 || ||||| ||| | ||||| || || |||||||| ||||||||||| |||||||| ||| Sbjct 205 AAAATACGACCACCTGCGTTCTGTAGCTGTTGAACTTCGAATGCTGTCTTCTCACCAGGA 146 Query 17496 GTACGAATACCCATAGCTTCACGAGGAGCACCTGCAAACTCTTCCAT 17542 | |||||||||||| ||||||||||||||||||||| || ||||| Sbjct 145 GAACGAATACCCATCGCTTCACGAGGAGCACCTGCATACATCTCCAT 99 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 158592627358200