Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_015269.1 Length=118351 Score E Sequences producing significant alignments: (Bits) Value seq33499 522 2e-143 seq34305 98.7 8e-16 seq107223 95.1 9e-15 seq33108 95.1 9e-15 >seq33499 Length=26748 Score = 522 bits (578), Expect = 2e-143 Identities = 621/842 (74%), Gaps = 0/842 (0%) Strand=Plus/Minus Query 37954 TTACTTGTTACGCATATCCATAATCATTTGGCCATCGTAGCCAGTGCCAACCACAGTCTG 38013 ||| |||||||| ||||||||||| | || |||||| || |||| || || || Sbjct 24100 TTATTTGTTACGAGCATCCATAATCAACTTACCTTCGTAGTCACCACCAATAACTGTTTG 24041 Query 38014 CGGAACACCACCTTGATACTTCTGAGCACGAATCATTTCAACTTCCAGTTGCTTCCAGCG 38073 || ||||||||||| || |||| |||||| ||||||||||||| ||||| ||||| || Sbjct 24040 TGGTACACCACCTTGGTATTTCTCAGCACGTTTCATTTCAACTTCGAGTTGTTTCCAACG 23981 Query 38074 AATCATCTCAGGAGTAATGGTACGTTGTAATGCGGCGTTAGCTTCAGCTTCTTTCTTAGC 38133 ||||||||| ||||| || || || || | |||||||||||||||||| | ||| Sbjct 23980 AATCATCTCTGGAGTGATTGTTTTCTGCAACACACTGTTAGCTTCAGCTTCTTTTTGAGC 23921 Query 38134 TGCATACAGTTTAGCATCAGCGTCACGTTCATTGGCAATAGCTTGGTTGTTGCGAGCTTC 38193 ||||| | ||||||||| || || ||||| || || |||| || || || ||||| Sbjct 23920 AGCATATAATTTAGCATCTGCATCTCGTTCGTTTGCCTGGGCTTCATTATTACGGGCTTC 23861 Query 38194 ACGATCTGCTTCTGCTTGTTTAACTTTCTGCTGAGCTTCTTGTTCAACACGAGCCAGTTC 38253 ||||| || ||||| | |||||| ||||| | ||||| | || || |||| || Sbjct 23860 TCGATCAGCCTCTGCCTTCTTAACTGCTTGCTGTGTTTCTTTAGCTACTCGGTCCAGATC 23801 Query 38254 AGCTTTAGCAGCATTAACCTGTTCTTCACGAACTTTTGTATTCTGTACCTGTTCCATGAT 38313 ||| | || || ||||||||||||||||||| |||||||| |||||| | |||||| Sbjct 23800 AGCCTGTGCTGCGTTAACCTGTTCTTCACGAATCTTTGTATTTGTTACCTGCTTCATGAT 23741 Query 38314 TACCGGTGGCAAAGTAATATCCTGAAGGAACACCTGCTTAACTGTGTAACCATATGGGCG 38373 ||| ||||| || ||||| || | ||| | | || || || |||||||| || || Sbjct 23740 TACATCAGGCAAGGTGATATCTTGCAAGAAGATTTCTTTTACAGTATAACCATAAGGACG 23681 Query 38374 TGCATACTCTTCAACTTCCTGTTGAATTGCAGTTTGCAATTGAGCCTGAATTTTAGCATC 38433 ||| || |||||| ||| || | || | ||||| || |||||||| | ||| | Sbjct 23680 TGCGTAGGCTTCAATTTCAGCTTTTACTGAATCCTGCAACTGCGCCTGAATCTCAGCGTT 23621 Query 38434 AAACAAATCTTGTGCTTTAGGTACAGACTTACCAAACTCACGAATAGTAGACAGTAATTT 38493 |||||||| |||||||| || || || ||||||||||| || | ||| || | | || Sbjct 23620 GAACAAATCCTGTGCTTTCGGGACTGATTTACCAAACTCTCGGACAGTGGATAAAAGCTT 23561 Query 38494 TTCAGTTACATATTTGTCTAACGCTTGATCCTGAGTACCTGCGTTAATACGGTTAATCGG 38553 || |||||||| || | ||||| || ||||| ||||| ||||| ||||| || || Sbjct 23560 TTGCTCAACATATTTATCCAGAGCTTGCTCTTGAGTGCCTGCATTAATTCGGTTCATAGG 23501 Query 38554 TGCCTTAGAACCATCAAACTGCAACATAACAGTCAGGTCAACAGTGGATTTAAACTTATC 38613 |||||||||||||||||||||||||||||| |||| || || || |||||||||||||| Sbjct 23500 TGCCTTAGAACCATCAAACTGCAACATAACGGTCATATCCACTGTTGATTTAAACTTATC 23441 Query 38614 CTGACTAGGAACCTGAAGTTTATCTAATTTTAGAGCAATATCTTTAGTACTAAAAGTATC 38673 |||||| || || || | |||||| || ||| |||||||| ||||| ||||| || Sbjct 23440 CTGACTCGGTACTTGCAATTTATCATATGTTATTTTGATATCTTTTGTACTGAAAGTCTC 23381 Query 38674 GAAAGAAGCGAAAGGATTTACAATATGAAAGCCGGGTAATACTGGGCTAGGGTCAACTTT 38733 || || || || || || | ||| || || || ||| || |||| | |||||| Sbjct 23380 AAAGCTTGCAAATGGGTTAACCACATGGAACCCTGGCTTTACAGGATTAGGATTAACTTT 23321 Query 38734 ACCCAGGAAAGTCTGGGTTTTAACAGTACCGTCTTGAACAACAGTATAAGAGTTAAGGGC 38793 ||||| || || || ||||| || ||||| ||||| || | |||| || || || || Sbjct 23320 ACCCATAAAGGTTTGTGTTTTTACTGTACCATCTTGCACGATGATATAGGAATTTAGAGC 23261 Query 38794 CA 38795 || Sbjct 23260 CA 23259 >seq34305 Length=2218 Score = 98.7 bits (108), Expect = 8e-16 Identities = 128/177 (72%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 27385 CTGAGTAAATGTACGACTAATAACGTCGTTCTGTTGTTCACGAGTCAGTGCGTTAAATCG 27444 ||| ||||| ||||| |||| ||||| | ||| || || || || | |||||| || Sbjct 595 CTGGGTAAAGGTACGGGTAATCACGTCCTGCTGCTGCTCTTTGGTGAGCGAGTTAAAGCG 654 Query 27445 AACAGCATAGCCAGAGACACGGATAGTCAATTGAGGATATTTTTCAGGATGTTTCTGTGC 27504 ||| |||||||| || || ||||| || || ||||||||||| ||||| | | | ||| Sbjct 655 AACGGCATAGCCCGAAACGCGGATGGTTAACTGAGGATATTTCTCAGGGTTATCCATTGC 714 Query 27505 ATCCAAAAGCTGATCACGGCTTAACACATTGACATTTAGGTGCTGACCACCTTCGAT 27561 |||| | | || ||| | | ||| || ||||| || ||||| || ||||| || Sbjct 715 GTCCATCAACATTTCCCGGTTCATCACGTTAACATTCAGATGCTGGCCGCCTTCAAT 771 >seq107223 Length=315 Score = 95.1 bits (104), Expect = 9e-15 Identities = 128/176 (73%), Gaps = 2/176 (1%) Strand=Plus/Minus Query 27375 ATTACATCGC-CTGAGTAAATGTACGACTAATAACGTCGTTCTGTTGTTCACGAGTCAGT 27433 |||||||||| ||| | || ||||| | || || || ||||| |||||||||||| Sbjct 254 ATTACATCGCGCTGTGGAAC-GTACGGTTGATCACATCAAGTTGTTGCTCACGAGTCAGT 196 Query 27434 GCGTTAAATCGAACAGCATAGCCAGAGACACGGATAGTCAATTGAGGATATTTTTCAGGA 27493 |||| ||||||||| || || ||||| || |||||||| ||||| ||||| || Sbjct 195 TTAATAAAGTTAACAGCATAACCGGATACACGAATGGTCAATTGTGGATAGTTTTCTGGG 136 Query 27494 TGTTTCTGTGCATCCAAAAGCTGATCACGGCTTAACACATTGACATTTAGGTGCTG 27549 || | | ||||||| ||| || ||||| ||||| || ||||| || || || Sbjct 135 TGCTCCATCGCATCCATAAGTTGTTCACGATCAAACACGTTCACATTCAGATGATG 80 >seq33108 Length=3479 Score = 95.1 bits (104), Expect = 9e-15 Identities = 123/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 27389 GTAAATGTACGACTAATAACGTCGTTCTGTTGTTCACGAGTCAGTGCGTTAAATCGAACA 27448 ||||| ||||| ||| ||||| |||||||||| | ||||| | ||||| || || Sbjct 2955 GTAAAGGTACGGGCAATGACGTCACGCTGTTGTTCAGGCGTCAGCGAATTAAAGCGCACG 2896 Query 27449 GCATAGCCAGAGACACGGATAGTCAATTGAGGATATTTTTCAGGATGTTTCTGTGCATCC 27508 ||||| || || ||||| || |||| || ||||| || |||||||||||| || || Sbjct 2895 GCATACCCGGAAACACGAATGGTCAGCTGCGGATACTTCTCAGGATGTTTCACGGCGTCT 2836 Query 27509 AAAAGCTGATCACGGCTTAACACATTGACATTTAGGTGCTGACCACCTTC 27558 ||| ||||||| | || || || |||| |||||| || ||||| Sbjct 2835 TCCAGCGTTTCACGGCGCAGGACGTTAACGTTTAAGTGCTGCCCGCCTTC 2786 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 377997173909600