Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_015283.1 Length=176428 Score E Sequences producing significant alignments: (Bits) Value seq41062 104 3e-17 seq62284 93.3 5e-14 >seq41062 Length=2478 Score = 104 bits (114), Expect = 3e-17 Identities = 160/223 (72%), Gaps = 4/223 (2%) Strand=Plus/Plus Query 162127 AGAAGCACATCTTTACTTCTAACTTGAAGTATCAGATCATGCTTGACTCAGTTCAAGGTA 162186 ||||||| || || |||||||| ||||| ||| || | ||||| |||||||||||| Sbjct 453 AGAAGCATATTTTCACTTCTAATTTGAAACGTCAAATTCTTCTTGATTCAGTTCAAGGTC 512 Query 162187 GAGGACCAGGTATGGCATTCATTCCCTACTGCTCTCTT-CCTGAGTTGGAAGCATGCAT- 162244 | |||||| | ||| | ||| || | |||| || ||||| | ||| | | ||| Sbjct 513 GTGGACCAAACCTAGCACT-ATTACCAATTGCTTCATTACCTGAAATTGAATCTTTCATT 571 Query 162245 GACGGTATGGGAGTTTATGGAAATGATCCATAGTCGTTCCTATACATACATCATCAAGAA 162304 || | |||| ||| | |||| | ||||| |||||||||||| | || || || Sbjct 572 GAAACT-TGGGCATTTTTTGAAAGCGTTCATAGCCGTTCCTATACACATATTATTCGTAA 630 Query 162305 TGTATATCCAGATCCTTCAGAGGTATTTGATACTATCTTAGAT 162347 || ||||| |||| || || |||||||||||||| |||||| Sbjct 631 CGTGTATCCGAATCCATCGGAAGTATTTGATACTATGTTAGAT 673 >seq62284 Length=976 Score = 93.3 bits (102), Expect = 5e-14 Identities = 170/244 (70%), Gaps = 4/244 (2%) Strand=Plus/Minus Query 160484 ACTGTCAGATGCTGCACTCAGAATGGCATTAGAGGTGGATCAGCGACTGTCCACTTCCCA 160543 ||||| | || ||| ||||| ||| || |||||||| |||| ||||| ||||| ||| Sbjct 243 ACTGTTA-ATCCTGTTCTCAGGGTGGTGTTCGAGGTGGAGCAGCAACTGTACACTTTCCA 185 Query 160544 ATCTGGCACCAAGAAATAGAAGATATTATTGTTCTAAAGAATAATAAAGGAACAGAAGAC 160603 | ||||| | || | |||||| || | || || || ||||||||||| |||||| || Sbjct 184 CTATGGCATTACGAGTTTGAAGATCTTGTAGTACTGAA-AATAATAAAGGTACAGAA-AC 127 Query 160604 AACA-GAGTAAGGAAACTAGACTATAGTATTCAGATTAGTCAGTTGTTTTATCAAAGATT 160662 || | ||||| | |||| ||| || ||||||||| | || |||||| | || Sbjct 126 CTCACGTGTAAGACAGTTAGATTATTGTTTTCAGATTAACAAAACTTTGTATCAACGTTT 67 Query 160663 CATTGATGATCGCAGCATCTCTTTGTTTAGTCCACATGATGTGCCAGGTTTATACGAAGC 160722 ||||| | | || | || ||| ||| |||||| || || |||| ||||| Sbjct 66 AATTGAACGTAAGAATATTACATTCTTTTCACCAAGTGATGTTCCTGGACTATATGAAGC 7 Query 160723 ATTT 160726 |||| Sbjct 6 ATTT 3 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563522265744000