Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_015295.1 Length=47279 Score E Sequences producing significant alignments: (Bits) Value seq69099 163 9e-36 seq63651 152 2e-32 seq29160 118 3e-22 seq56092 102 2e-17 seq526 93.3 1e-14 seq63650 82.4 2e-11 seq76763 80.6 8e-11 seq64133 80.6 8e-11 >seq69099 Length=964 Score = 163 bits (180), Expect = 9e-36 Identities = 224/318 (70%), Gaps = 2/318 (1%) Strand=Plus/Plus Query 1505 TTCTGTCAGGCATACATAGAAACGGGCAACGCTTCGGAGGCGTACCGCTTATCGTATGCC 1564 |||||||||| |||||| |||||||| || ||||| ||||| || || ||||||| Sbjct 461 TTCTGTCAGGTATACATCGAAACGGGTAATGCTTCAGAGGCTTATCGGACGGCGTATGCT 520 Query 1565 GCAGACAAGATGAAGCCAGAAGCAATACACGTTAACGCCAGCAAGCTACTTGATAACGCT 1624 || ||||||||||| || ||||||||||||||||| || | || | ||| |||| | Sbjct 521 GCTGACAAGATGAAACCCGAAGCAATACACGTTAAGGCATCCGAGTTGCTTTCAAACGGT 580 Query 1625 AAGGTCGCGCTAAGGGTTTCTGAATTGCAGGGCGAAATTA-AGCAACGTCACAATGTCAC 1683 ||||| || ||||||| ||||||| ||| ||| | | ||| || || ||||||| Sbjct 581 AAGGTAACGGTAAGGGTCGCTGAATTAAAGGCTGAAGTAAGAGC-GCGGCATGATGTCAC 639 Query 1684 CGTTGATTCGCTCCTCATGGAGCTGGAAGAAGCCAGGCAAAAGGCATTAACAGCAGAGAC 1743 |||||||| ||| | ||||||||||| || ||||| || ||||| ||||| || Sbjct 640 AGTTGATTCCCTCATTCGTGAGCTGGAAGAGGCAAGGCAGGCAGCTTTAACTGCAGAAAC 699 Query 1744 CCCACAATCNNNNNNNNNNNNNNNNNNNNNNNTGGGGAAAGCTAAACTGACGGGCCTTGA 1803 || || || |||| ||||| || ||||| || ||||| Sbjct 700 TCCTCAGTCATCCGCAGCTGTAGCCGCAACGATGGGCAAAGCAAAGCTGACAGGGCTTGA 759 Query 1804 TAAGCAGGTCGTAGAGCT 1821 |||||| || || ||||| Sbjct 760 TAAGCAAGTTGTTGAGCT 777 >seq63651 Length=592 Score = 152 bits (168), Expect = 2e-32 Identities = 186/254 (73%), Gaps = 0/254 (0%) Strand=Plus/Minus Query 46867 TCAGCAATAAAGGCATTGAGCTTGTAAAGGGCTTTGAGGGTTGCAGGCTGGAGGCGTACC 46926 |||||||||||||||| | ||| | ||| |||| || ||| | || ||||| || | Sbjct 254 TCAGCAATAAAGGCATCAACCTTATCAAGCGCTTCGAAGGTCTGAAACTTGAGGCATATC 195 Query 46927 GCGACAGTGTAGGCATTCCGACATGCGGCTACGGACACACGCATGGCGTCAAAATGGGCG 46986 | ||||| ||| ||| ||||| ||||||||| || || || || || || ||||||| Sbjct 194 GTGACAGCGTAAACATACCGACTATCGGCTACGGGCATACTCACGGTGTAAAGATGGGCG 135 Query 46987 ATGTTATTACCGGGCAGCAGGCAGATAAATATTTGCGAGAAGATTTGCAGGTTGCGGAGC 47046 || | |||||| | | ||||| ||| || | | || || |||||||||||||| |||| Sbjct 134 ATATCATTACCTGCGAACAGGCCGATGCATTTCTTCGTGAGGATTTGCAGGTTGCAGAGC 75 Query 47047 TTACTGTTAGCTCAAGCGTGAAAGTTAATCTAAGCCAGGGGCAGTTTGATGCTCTGGTGT 47106 | || ||| | | | ||| || || || || | ||| ||||| || || |||| || Sbjct 74 TGACCATTAACACCAACGTAAAGGTGAAGCTGACTCAGAATCAGTTCGACGCGCTGGCGT 15 Query 47107 CATTCGTGTTCAAC 47120 |||| ||||||||| Sbjct 14 CATTTGTGTTCAAC 1 >seq29160 Length=3305 Score = 118 bits (130), Expect = 3e-22 Identities = 377/572 (66%), Gaps = 16/572 (3%) Strand=Plus/Plus Query 29844 GTGATTACTGCGTTAACGAGCTGTGCTTCATAGCCCAAAGT--GCCGTTTACAAGGTGTG 29901 ||||| || ||||| || || ||||| |||||||| |||| ||| ||||| ||| | Sbjct 2518 GTGATAACCGCGTTCACCAGTTGTGCCTCATAGCC--AAGTACGCCATTTACCAGGAAGG 2575 Query 29902 TTTTTTGAGCCACGGCGAAGGGATTCATTCCCCACTGCGCGGCCTGTAGCGCAACCGCCA 29961 |||| ||||| ||||||||||| ||||| | |||||| |||||||| | || || || | Sbjct 2576 TTTTCTGAGCAACGGCGAAGGGGTTCATGCGCCACTGTGCGGCCTGCATTGCGACAGCAA 2635 Query 29962 GGCAATCAGCAGGCTTCCCGGCGAGGTGGGCGGGTACTGTTGTTCTGC-CCTGCGCCATG 30020 | || ||||| | || || || ||||| || ||||| | ||||| ||| |||||| Sbjct 2636 GACAGTCAGCTGTTTTTCCTGCCAGGTGTGCCGGTACGGAAACTCTGCTGCTG-GCCATG 2694 Query 30021 ACCTCGGCAAA-CGCCTGTAGTTTTTGCAGTCCTGACGGGCTAAATATTGCCGCTTTTGT 30079 | || ||||| || | || || | |||| | ||| || || || | | || Sbjct 2695 ATGTCAGCAAAGCGAAT-CAGCTTGTCCAGTGCATCCGGACTGAAAATCATGGATGCAGT 2753 Query 30080 GTCGGCCTCATTAGCCGGACTGTGAACAATTTCAGTGCTCAT--ACGTAATCCTTTTTCT 30137 | | || | | ||| | ||| | | | || |||| || ||||||| Sbjct 2754 GCCTGCATTTTCAGCATCAGTGTTCATCAGTGGGGTATTCATCGTGGTTTTCCTTTTAAC 2813 Query 30138 TCGCCCAGGCTGGGCGTGTGATTTCTTCAATGCCGCCCCAGCTATCACTAACCCGGCATT 30197 ||||| || ||||| ||| ||||| |||||||||| | |||| | ||||| | Sbjct 2814 GTGCCCATGCAGGGCGGCGGATAGTTTCAACGCCGCCCCAGTGACCACTGAGACGGCAAT 2873 Query 30198 CGTGGTATGTGTTCAGACTGTTGCG-GAATAAATCATGGCCTGTTGCCACATCATCCGCA 30256 | ||| ||||||| || || ||| || | | | || | || ||||||| || Sbjct 2874 CATGGAATGTGTTGAG---GTCGCGACAAAAGGTTGTATCCGGCGCTCAGATCATCCTCA 2930 Query 30257 GCGAGCTGGAACGTCCGCACGGGATATCGACCGCAGTTGATCGTCTCGCTCACGGCAATA 30316 || || || ||| || || || || ||||||| || | ||||| || |||||| Sbjct 2931 TGGA-CTTCAAAACCCGGACTGGGTAGCGTCCGCAGTCAATGGCTTCGCTTACCGCAATA 2989 Query 30317 AAAATAAACATGGGATATTCGCCGAAGTGCTTCAGATACCCTTCGCGGTACATGGCGTCT 30376 || | |||| |||| | ||| | | | | | |||||| ||||| || | Sbjct 2990 AAGACAAACTGCGGATGCGTGTTAAAG-GTGTTATAAAACCTTCGGAATACATAGCTGCC 3048 Query 30377 TGCATGTGATAGCGGAATTCTTCGACATGTCG 30408 || | ||| || | |||||| |||| ||| || Sbjct 3049 TGAACGTGGTACCTGAATTCCTCGATATGGCG 3080 >seq56092 Length=894 Score = 102 bits (112), Expect = 2e-17 Identities = 210/301 (70%), Gaps = 11/301 (4%) Strand=Plus/Minus Query 35310 ACAGGAGTAATTATACATGAGAAAGCACGTTTCAGGCCAGAAAACATTACATAAAAACCT 35369 |||||||||||||| | ||||| |||||| |||| ||||| |||||| | Sbjct 303 ACAGGAGTAATTATGCCAAAGAAA-CACGTTGTGTACCAGGCGGATTTACACAAAAACAT 245 Query 35370 CGCCAGA-CTCGACTATTTTCGCGGCGTATCGCAGGTGACTGG-TGACAAGTTGCGCCAG 35427 || || ||||| ||||| ||| | | | | | |||| ||| ||| || | || Sbjct 244 TACCCGATCTCGA-TATTTGCGCT-CATGTAACCCGATTCTGGCTGAGAAGCTGAGAGAG 187 Query 35428 ATTCTCGAAGAACACAAAGCGAAGGAGAAGGGCGATGTCAGTCGTTGAA---AAATTGTC 35484 || || ||||| ||||||| ||||||||||||| | | ||| |||| | || | || Sbjct 186 ATACTGGAAGAGCACAAAGTGAAGGAGAAGGGCAAA-TGAGT-GTTGTACGTAACCTATC 129 Query 35485 AGATTACCGCCCTAAGCCGAAGGGCATGGAGCGAAGAGTGGCAGACACCGATGATGGCTT 35544 |||||| |||||| || |||| |||||||| | ||||| | || ||||| || Sbjct 128 AGATTATCGCCCTTCTACGGAGGGTATGGAGCGC-GCGTGGCTCAACTGGAAGATGGATT 70 Query 35545 TATCATGCTGGCTATGGAGCTGTATGAGGAGCTTATTGGAGCTAACTTAACGAAGAACCA 35604 | | || || | | ||||||||| |||||||| || ||| | ||||||||||| || Sbjct 69 CACCCGTCTTGCCAATGCGCTGTATGACGAGCTTATCGGTGCTGATTTAACGAAGAATCA 10 Query 35605 G 35605 | Sbjct 9 G 9 >seq526 Length=6931 Score = 93.3 bits (102), Expect = 1e-14 Identities = 141/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 37597 CTGGCGAAAGAGTTACGCTGCCCGGTTATAGCATTGTCTCAGTTGAACCGTAATTTGGAG 37656 ||||| || || || ||||||||| | || | || ||| | ||||| |||| Sbjct 6524 CTGGCCAAGGAATTCAACTGCCCGGTGGTGGCGCTCTCCCAGCTCAACCGCTCGCTGGAA 6583 Query 37657 CAGCGTGCAAACAAGCGACCGTGCAATGCCGACTTACGTGAGTCGGGCGTAATCGAGCAG 37716 ||||| | |||||||| ||| || ||||| | || || ||||||| ||||||||| Sbjct 6584 CAGCGGCCGAACAAGCGTCCGGTGAACTCCGACCTGCGCGAATCGGGCGCCATCGAGCAG 6643 Query 37717 GAAGCTGATGTGATTTTCATGGTTTATCGCGACGAGAAGTACAACCCGCAGACAGAGATG 37776 || || || || || | | || || || |||||| |||| ||||| |||| ||| Sbjct 6644 GACGCCGACGTCATCATGTTCGTCTACCGGGACGAGGTGTACCACCCGGAGACCGAGTAC 6703 Query 37777 AAAGGCGTCACTGAAATCATC 37797 || ||||| | ||||||||| Sbjct 6704 AAGGGCGTGGCGGAAATCATC 6724 >seq63650 Length=304 Score = 82.4 bits (90), Expect = 2e-11 Identities = 89/118 (75%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 47105 GTCATTCGTGTTCAACCTCGGATCTGGCAACTTCGTTAAATCGACGCTGCTGAAGAAGTT 47164 |||||| ||||||||||| || || || |||||||||||||| || ||||| || || | Sbjct 303 GTCATTTGTGTTCAACCTTGGCTCCGGTAACTTCGTTAAATCAACACTGCTCAAAAAACT 244 Query 47165 GAACGCCGGAGATTATGCCGGTGCTGCTAACGAATTCGGTCGGTGGGTTCGTGCTGGT 47222 ||| || ||||| || ||||| || | || || || ||||||| ||||||| Sbjct 243 CAACCTTGGCGATTACGCTGGTGCAGCCGATGAGTTTGGAAAGTGGGTTAATGCTGGT 186 >seq76763 Length=785 Score = 80.6 bits (88), Expect = 8e-11 Identities = 125/179 (70%), Gaps = 6/179 (3%) Strand=Plus/Minus Query 258 GGTGCTAAGCGGCTGCGGGTCAACGCAAAGTGT------CCAGTGCCCAGCCCCGCCACC 311 || |||||||| ||||| ||| || || ||| |||||| || | || || Sbjct 733 GGGGCTAAGCGCCTGCGCGTCTCAGCCAAATGTGCTCGGCCAGTGTCCGGTAAATCCTCC 674 Query 312 ACCCCCGGCCTGGCTAATGACGCCAGCGCCCGACCTGCTGACACCGTTGAACGGGATTAT 371 || || || ||| | |||| | |||| |||||| | | ||| ||| | | ||||||||| Sbjct 673 TCCACCCGCGTGGATGATGATGGCAGCCCCCGACTTACAGACGCCGCTCAGCGGGATTAT 614 Query 372 TTCACTCTCCGACAGCGAATCGCTACAGCAGAAAAGCAAATAGCCGGGTTACAGGAATA 430 ||||| ||| || ||||||||| || | ||||||| | |||| ||||||| || Sbjct 613 TTCACCCTCAGAGAGCGAATCGAAACCGTCACAAAGCAACTGACCGGCCTACAGGACTA 555 >seq64133 Length=746 Score = 80.6 bits (88), Expect = 8e-11 Identities = 177/263 (67%), Gaps = 8/263 (3%) Strand=Plus/Minus Query 174 GTTGCAGCAATCGACGCTAAATACACGCGAGAACTGAATGATGCGAAACAGACTATTACT 233 ||||| | || || || ||||||||| || | || |||||| || | || |||| Sbjct 417 GTTGCTTCCATTGATGCCAAATACACGA-AGGATTGGCCGATGCGCAAAA-ACCATTAGC 360 Query 234 GATTTGCAGCGTGACGTTGCCAGCGGTGCTAAGCGGCTGCGGGTCAACGCAAAGTGT--- 290 ||| ||| | || || | || |||||||| ||||| ||| || || ||| Sbjct 359 GATCTGCGTAGGGATGTCGATTCTGGGGCTAAGCGCCTGCGCGTCTCAGCCAAATGTGTT 300 Query 291 ---CCAGTGCCCAGCCCCGCCACCACCCCCGGCCTGGCTAATGACGCCAGCGCCCGACCT 347 |||||| || | || || || || || ||| | |||| | |||| |||||| | Sbjct 299 CGGCCAGTGTCCGGTAAATCCTCCGCCACCCGCGTGGATGATGATGGCAGCCCCCGACTT 240 Query 348 GCTGACACCGTTGAACGGGATTATTTCACTCTCCGACAGCGAATCGCTACAGCAGAAAAG 407 | ||| ||| | | |||||||||||||| ||| || ||||||||| || | |||| Sbjct 239 ACAGACGCCGCTCAGCGGGATTATTTCACCCTCAGAGAGCGAATCGAAACCGTCACAAAG 180 Query 408 CAAATAGCCGGGTTACAGGAATA 430 ||| | | || ||||||| || Sbjct 179 CAACTGACTGGCCTACAGGACTA 157 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 150937290912600