Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq2641 168 1e-36 seq28556 163 6e-35 seq30797 95.1 3e-14 >seq2641 Length=263 Score = 168 bits (186), Expect = 1e-36 Identities = 157/198 (79%), Gaps = 1/198 (1%) Strand=Plus/Minus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||| | ||| || || ||||| || ||||| ||||| |||||||||||||| |||| Sbjct 237 AGTCGAAGAACCAGATGCAGAGTAGATTCTTTCTGAATGTTGTAATCGGCAAGGGTTCGA 178 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 |||||||| | ||||||||| || ||||| ||||||||||| || || ||||| || || Sbjct 177 CCATCTTCCAACTGCTTACCAGCAAAGATGAGTCGTTGTTGATCGGGGGGAATACCCTCC 118 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 ||||||||||||| | ||||| || || || || |||||| ||| ||||||||||| Sbjct 117 TTGTCTTGAATTTGGT-TTTGACATTGTCGATAGTATCCGAAGATTCAACTTCAAGGGTG 59 Query 195103 ACCGTCTTTCCTGTCAAA 195120 | ||||| || |||||| Sbjct 58 ATAGTCTTGCCGGTCAAA 41 >seq28556 Length=388 Score = 163 bits (180), Expect = 6e-35 Identities = 159/205 (78%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 |||||| || ||||| |||||||| |||||||| | || || | |||||||| ||||| Sbjct 79 GTGAAGGGTAGACTCCTTTTGAATGTTGTAATCAGAGAGGGTACGGCCATCTTCCAGCTG 138 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || |||||||| || || || ||||| |||||||||||||||||||| || || || Sbjct 139 CTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAGGAATGCCTTCTTTGTCCTGGATCTT 198 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 |||||| || |||||||| |||||| || ||||| || || | ||||| || || Sbjct 199 CGACTTGACATTGTCAATGGTATCCGAAGACTCTACTTCTAGCGTGATGGTCTTGCCGGT 258 Query 195117 CAAAGTTTTTACGAACACTTGCATT 195141 | || || ||||| | ||||||| Sbjct 259 GAGGGTCTTGACGAAGATTTGCATT 283 >seq30797 Length=220 Score = 95.1 bits (104), Expect = 3e-14 Identities = 99/130 (76%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 195001 CCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGC 195060 || || ||||| || || || ||||| || ||||||||||| ||||| ||||| || | Sbjct 219 CCAGCAAAGATCAGACGCTGCTGGTCAGGGGGAATGCCTTCCTTGTCCTGAATCTTCGAC 160 Query 195061 TTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAA 195120 || || || || |||||||| || ||||| ||||| || | |||||||| |||||| Sbjct 159 TTTACATTGTCGATGGTGTCGGAGGACTCCACCTCAAGAGTGATGGTCTTTCCAGTCAAA 100 Query 195121 GTTTTTACGA 195130 || || |||| Sbjct 99 GTCTTGACGA 90 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1107629355140100