Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_015457.1 Length=165919 Score E Sequences producing significant alignments: (Bits) Value seq33108 174 2e-38 seq31280 109 6e-19 seq34305 96.9 4e-15 >seq33108 Length=3479 Score = 174 bits (192), Expect = 2e-38 Identities = 144/176 (82%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 59808 CTCTCAGTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGAGTTAAAG 59867 || || ||||||||||| || || ||||| ||||| ||||| || ||||| || |||||| Sbjct 2961 CTTTCCGTAAAGGTACGGGCAATGACGTCACGCTGTTGTTCAGGCGTCAGCGAATTAAAG 2902 Query 59868 CGAACTGCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATGCTTAACT 59927 || || ||||| ||||| ||||| ||||||||||||||||| || || ||||| || || Sbjct 2901 CGCACGGCATACCCGGAAACACGAATGGTCAGCTGCGGATACTTCTCAGGATGTTTCACG 2842 Query 59928 GCATCTTCCAGAGTTTCACGACGCAGAACGTTTACGTTCAGGTGTTGACCACCTTC 59983 || |||||||| |||||||| ||||| ||||| ||||| | ||| || || ||||| Sbjct 2841 GCGTCTTCCAGCGTTTCACGGCGCAGGACGTTAACGTTTAAGTGCTGCCCGCCTTC 2786 >seq31280 Length=10079 Score = 109 bits (120), Expect = 6e-19 Identities = 253/376 (67%), Gaps = 4/376 (1%) Strand=Plus/Plus Query 138006 TTCAGTTGAACGCCATAATCCATATGACGAATACGGTTTTCTTCTACGCCTTTGTTATTT 138065 || || || || || || ||||| ||||| | ||||| |||| || || ||| ||| Sbjct 1342 TTGAGCTGCACACCGTAGTCCATGTGACGTACGCGGTTACCTTCCACACCACGGTTGTTT 1401 Query 138066 TTCAAAACGAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATA-AGCAGTAGCAGC 138124 |||| || | || |||| ||||||| |||||| || ||||| | ||| || || || Sbjct 1402 TTCAGGACTAACAGGCTTTCTACTTCCAGATGCCACATCGGATAGAACAGC-GTCGCTGC 1460 Query 138125 GCCGCCACGAATTCCACCCTGTGAGCATGATTTAACAGCAGTCTGAAAATGTTTCCAAAA 138184 ||||||||| | || ||||| || || ||||| || || ||||| || || || | || Sbjct 1461 GCCGCCACGGACGCCGCCCTGCGAACAGGATTTCACCGCTGTCTGGAAGTGCTTGTAGAA 1520 Query 138185 AGGAATAACACCAGTATGACGTACTTCACCTGTACCAATCTTAGAACCTTCGGCACGAAT 138244 || ||| ||| ||||| ||||||| | |||| || || || || Sbjct 1521 CGGGATACAACCGGTATGGAAAGCTTCACCGCCGCGAATCGGGCTGCCCAGCGCGCGGAT 1580 Query 138245 CATACCAACGTTAATACCAATTCCAGCGCGTTTGGAGATATATTCAACAATTGAAGCAGA 138304 ||| ||||||||||||| || ||||||| || | |||| ||||| | || | Sbjct 1581 ACGACCCGCGTTAATACCAATACCTGCGCGTTGTGAAACGTATTTCACAATAG-CGCTGG 1639 Query 138305 AGCT-TTGTTAATAGACTTCAGCGAATCACCTGCTTCAATAACAACGCATGAACTAAACT 138363 || | ||| || || | ||| || || |||||| | || || || || |||| Sbjct 1640 AGGTCGCGTTGATGGAATCCAGGCTGTCGCCACATTCAATCAGGACACAGGAGCTGAACT 1699 Query 138364 GCCGAGTTGGAGTACG 138379 | || ||||| ||||| Sbjct 1700 GACGGGTTGGCGTACG 1715 >seq34305 Length=2218 Score = 96.9 bits (106), Expect = 4e-15 Identities = 125/173 (72%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 59814 GTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGAGTTAAAGCGAACT 59873 ||||||||||| | || ||||| ||||||| || || || |||||||||||||| Sbjct 599 GTAAAGGTACGGGTAATCACGTCCTGCTGCTGCTCTTTGGTGAGCGAGTTAAAGCGAACG 658 Query 59874 GCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATGCTTAACTGCATCT 59933 ||||| || || || |||||||| | ||| |||||||| || || | | | ||| || Sbjct 659 GCATAGCCCGAAACGCGGATGGTTAACTGAGGATATTTCTCAGGGTTATCCATTGCGTCC 718 Query 59934 TCCAGAGTTTCACGACGCAGAACGTTTACGTTCAGGTGTTGACCACCTTCAAT 59986 || |||| || || ||||| || ||||| || || || |||||||| Sbjct 719 ATCAACATTTCCCGGTTCATCACGTTAACATTCAGATGCTGGCCGCCTTCAAT 771 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 529948238652000