Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_015938.1 Length=89916 Score E Sequences producing significant alignments: (Bits) Value seq33499 515 2e-141 seq36301 118 6e-22 >seq33499 Length=26748 Score = 515 bits (570), Expect = 2e-141 Identities = 604/812 (74%), Gaps = 11/812 (1%) Strand=Plus/Minus Query 77152 CGTAGCCAGCACCCATAACAGTGTTCGGAACGCCACCCTGGTATTTATCAGCAATGGTCT 77211 ||||| || |||| ||||| || | || || ||||| |||||||| |||||| || Sbjct 24065 CGTAGTCACCACCAATAACTGTTTGTGGTACACCACCTTGGTATTTCTCAGCACGTTTCA 24006 Query 77212 GCTGAACATCCAGTTCTTTCCAGCGAATCATCTCAGGTGTGATGGTCTGCTGAAGGGCGC 77271 | ||| || |||| |||||| ||||||||||| || ||||| || | ||| | | | Sbjct 24005 TTTCAACTTCGAGTTGTTTCCAACGAATCATCTCTGGAGTGATTGTTTTCTGCAACACAC 23946 Query 77272 GGTTAGCTTCTGCTTCTTTCTTAGCTGCGTACAGCTTAGCATCAGCATCACGTTCGTTAG 77331 ||||||||| |||||||| | ||| || || | |||||||| ||||| |||||||| | Sbjct 23945 TGTTAGCTTCAGCTTCTTTTTGAGCAGCATATAATTTAGCATCTGCATCTCGTTCGTTTG 23886 Query 77332 CCTGAGCGGCGTTAGCACGAGACTCTTTTGCTGCCACAGAAGT---AACAACTTGCTGTT 77388 |||| || | ||| ||| | ||| | ||| | | | ||| |||||||| Sbjct 23885 CCTGGGCTTCATTATTACGGGCTTCTCGATCAGCCTCTGCCTTCTTAACTGCTTGCTGTG 23826 Query 77389 GAGCAATCTGTTCTTTCTTAG-CCAGTTCAGCTTTCTCTGCGTTCACCTCTTCTTCACGA 77447 ||| | | || | |||| ||||| | ||||||| |||| |||||||||| Sbjct 23825 TT----TCTTTAGCTACTCGGTCCAGATCAGCCTGTGCTGCGTTAACCTGTTCTTCACGA 23770 Query 77448 ATCTTGGTGTTGGTCACCTGAGTCATGATAACTTCCGGCAGGGTGATATCCTGCAAGAAG 77507 ||||| || || || ||||| ||||||| || || |||| ||||||||| ||||||||| Sbjct 23769 ATCTTTGTATTTGTTACCTGCTTCATGATTACATCAGGCAAGGTGATATCTTGCAAGAAG 23710 Query 77508 ATCTCCTTAACGGTATAACCGTAAGGACGGGCGTACGCTTCGATTTCTGCTTTCACAGAA 77567 || || || || |||||||| |||||||| ||||| ||||| ||||| ||||| || ||| Sbjct 23709 ATTTCTTTTACAGTATAACCATAAGGACGTGCGTAGGCTTCAATTTCAGCTTTTACTGAA 23650 Query 77568 TCCTGCAACTGAGCCTGGATTTCAGCGTTGAAAAGGTCTTGCGCCTTGGGCACAGACTTA 77627 ||||||||||| ||||| || ||||||||||| | || || || || || || || ||| Sbjct 23649 TCCTGCAACTGCGCCTGAATCTCAGCGTTGAACAAATCCTGTGCTTTCGGGACTGATTTA 23590 Query 77628 CCGAACTCACGGACAGTAGAGAGCAATTTCTGCTCTACGTACTTATCCAGAGCCTGCTCC 77687 || ||||| |||||||| || | | || ||||| || || ||||||||||| ||||| Sbjct 23589 CCAAACTCTCGGACAGTGGATAAAAGCTTTTGCTCAACATATTTATCCAGAGCTTGCTCT 23530 Query 77688 TGAGTACCAGCGTTGATGCGGTTCATTGGCGCTTTAGAGCCATCAAACTGCAACATGACA 77747 ||||| || || || || |||||||| || || ||||| ||||||||||||||||| || Sbjct 23529 TGAGTGCCTGCATTAATTCGGTTCATAGGTGCCTTAGAACCATCAAACTGCAACATAACG 23470 Query 77748 GTCATATCCACAGTGGATTTGAACTTGTCCTGGCTAGGAACCTGGAGCTTGTCGTATGAG 77807 ||||||||||| || ||||| ||||| ||||| || || || || | || || |||| Sbjct 23469 GTCATATCCACTGTTGATTTAAACTTATCCTGACTCGGTACTTGCAATTTATCATATGTT 23410 Query 77808 ATTTTAATATCCTTCGTGGAGAAGGTATCAAAACTTGCAAACGGGTTCACGATGTGGAAG 77867 ||||| ||||| || || ||| || ||||| |||||||| ||||| || | ||||| Sbjct 23409 ATTTTGATATCTTTTGTACTGAAAGTCTCAAAGCTTGCAAATGGGTTAACCACATGGAAC 23350 Query 77868 CCCGGCTTGACAGGTGCAGTGGCGACTTTACC--AGAAGGTCTGAGTCTTAACCGTACCG 77925 || ||||| ||||| || |||||||| ||||| || || || || ||||| Sbjct 23349 CCTGGCTTTACAGGATTAGGATTAACTTTACCCATAAAGGTTTGTGTTTTTACTGTACCA 23290 Query 77926 TCTTGCACAACGGTGTAGGAGTTGAG-GCCAA 77956 |||||||| | | | ||||| || || ||||| Sbjct 23289 TCTTGCACGATGATATAGGAATTTAGAGCCAA 23258 Score = 109 bits (120), Expect = 3e-19 Identities = 125/168 (74%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 42230 ATTACCTGACCAGATGCAAGTCTTTTTAGGATAAGCATCACGAGGTGCGATGTATTCAGG 42289 ||| || | ||| | ||| |||||||| ||||||||||| | || | || || || || Sbjct 524 ATTTCCAGTCCAAAGGCAGGTCTTTTTTGGATAAGCATCCCTAGCTTTTATATACTCTGG 465 Query 42290 ATACAGAGGATGAACATCGTCAGATGGTAAATATCCACCATACTCATATGGATGGAAGTT 42349 | |||||||||| | ||| | ||||||||| || |||||||| || ||||| || | Sbjct 464 AAACAGAGGATGGATATCATTCATTGGTAAATACCCCCCATACTCGTAGGGATGAAACAT 405 Query 42350 AAAGTCAGGCTTACGCCACAAAGTTGCCAACACACTTACTGGATTCTC 42397 ||||||||||| | ||||| |||| ||| ||| ||| || || || Sbjct 404 GAAGTCAGGCTTCCTCCACATCGTTGACAAGACAGATACAGGGTTTTC 357 >seq36301 Length=2078 Score = 118 bits (130), Expect = 6e-22 Identities = 132/175 (75%), Gaps = 1/175 (1%) Strand=Plus/Minus Query 41728 GCCATGAACATGAATAACTTCCTCTTCAGGAATTCCAGCACGTTCAAGCAAATCATCAAC 41787 |||||| ||||||||||||| || |||||||| |||||||| |||| |||||| Sbjct 1903 GCCATGTGCATGAATAACTTCTTCACGGGGAATTCCTGCACGTTCTAGCAGGTCATCACG 1844 Query 41788 GTTTGTTGTG-ACGTTTTTAACACGACCTTTATAACGTTCAAACCATTCAGCAATACGGA 41846 ||||||||| | |||||||| ||||| ||| | ||||||||| |||||||| | Sbjct 1843 TTTTGTTGTGAAATTTTTTAACCTGACCTGGATACTTATTAAACCATTCTGCAATACGCA 1784 Query 41847 GGTGAGCCACATTGGGCTCAACTGTTCCTAGCTCTTCACGGCGCTTGTTGTAGAA 41901 | ||||| | ||| ||||| || | || | ||||| ||||| ||||| || || Sbjct 1783 GATGAGCTATATTTGGCTCTACAGAACCCAACTCTTTTCGGCGTTTGTTATAAAA 1729 Score = 82.4 bits (90), Expect = 4e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 41933 AAAGCTTGGATGTTACAAACCTCTTCAAGGTCATACTCATCCCACATAGCTTTACCGCTA 41992 |||| |||| ||||| || ||||||| |||||| ||||||||||||||||| || Sbjct 1636 AAAGAATGGAGATTACAGACTTCTTCAATGTCATATTCATCCCACATAGCTTTTCCAGAT 1577 Query 41993 TCAGTATCAGTGCGGAAAGCACGGACTCCACTTGCAACAGAGAGTCCTGCCCC 42045 | || || || ||||||||||| | |||||| | ||| |||||||| || Sbjct 1576 TGTGTGTCGGTACGGAAAGCACGAATACCACTTTCTACACTAAGTCCTGCACC 1524 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 287149672049100