Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_016160.1 Length=36661 Score E Sequences producing significant alignments: (Bits) Value seq84058 416 7e-112 seq93587 370 2e-98 seq57448 132 1e-26 seq56734 127 5e-25 seq39396 104 5e-18 seq83242 98.7 2e-16 seq93648 84.2 5e-12 >seq84058 Length=491 Score = 416 bits (460), Expect = 7e-112 Identities = 391/493 (79%), Gaps = 4/493 (1%) Strand=Plus/Minus Query 4695 TGCTGAACGGCGACGGTACCGGGGAT-AACCTGGAAGGGCTGAACAAAGTGGCAACCGCC 4753 |||||||||| ||||| | || || ||||| ||||| || ||| ||||| || | Sbjct 490 TGCTGAACGGAGACGGCAAAGGCGACGAACCTTGAAGGTCT-AACGCGGTGGCCACACCG 432 Query 4754 TATGACACCTCGCTGAATGCCACCGGCGACACCCGCGCTGACATTATCGCTCACGCTATT 4813 |||||| | || ||||||||| |||| || || || |||||||| || ||||| || || Sbjct 431 TATGACGCTTCTCTGAATGCCTCCGGGGATACGCGTGCTGACATCATTGCTCATGCGATC 372 Query 4814 TATCAGGTGACCGAGTCTGAGTTCAGCGCTTCCGGTATCGTCCTGAACCCGCGCGACTGG 4873 || ||||| || |||||||| |||||||| |||||||| |||| || || ||||||||| Sbjct 371 TACCAGGTCACTGAGTCTGAATTCAGCGCGTCCGGTATTATCCTTAATCCTCGCGACTGG 312 Query 4874 CACAACATCGCGTTGCTGAAAGACAATGAAGGCCGCTATATCTTCGGTGGTCCTCAGGCA 4933 |||| |||||| |||| |||||| ||| || || |||||||| || ||||| ||||| Sbjct 311 CACAGCATCGCACTGCTTAAAGACCGTGATGGTCGTTATATCTTTGGCGGTCCGCAGGCG 252 Query 4934 TTCACCAGTAACATCATGTGGGGCTTGCCAGTGGTTCCGACTAAGGCGCAGGCCGCCGGC 4993 |||||||| |||| |||||||||| |||| || || || || | |||||| |||| Sbjct 251 TTCACCAGCAACAACATGTGGGGCCTGCCTGTTGTGCCTACGCGTTCACAGGCCAGCGGC 192 Query 4994 ACCTTTACCGTAGGCGGTTTCGATATGGCCTCACAGGTCTGGGATCGCATGGATGCCACC 5053 || ||||| || || ||||| || |||||||| ||||||||||| ||||||||||| || Sbjct 191 ACATTTACTGTTGGTGGTTTTGACATGGCCTCTCAGGTCTGGGACCGCATGGATGCAACG 132 Query 5054 GTGGAAGTTAGCCGTGAAGACCGCGATAACTTCGTGAAAAACATGCTGACCATCCTGTGC 5113 || || || ||||| |||||||| || ||||| || ||||| |||||||| |||||||| Sbjct 131 GTTGAGGTCAGCCGCGAAGACCGGGACAACTTTGTCAAAAA-ATGCTGACAATCCTGTGT 73 Query 5114 GAAGAGCGTCTGGCGCTGGCGCATTATCGCCCGACAGCAATCATCAAGGGCACCTTCTCT 5173 || |||||||| || ||||| || |||||||| |||||||||||||| ||| | || || Sbjct 72 GAGGAGCGTCTTGCTCTGGCTCACTATCGCCCTACAGCAATCATCAA-GGCTCTTTTGCT 14 Query 5174 TCTGGCTCATGAT 5186 || ||||| |||| Sbjct 13 TCAGGCTCCTGAT 1 >seq93587 Length=445 Score = 370 bits (410), Expect = 2e-98 Identities = 341/430 (79%), Gaps = 1/430 (0%) Strand=Plus/Minus Query 1880 GTGAATGCGGTGGTGGTGAAAGATGCTGCTGGCAACCGCAAGCTCGATAAATCCAAAGCA 1939 || ||||| ||| | || ||||| || || |||||| | ||||| || |||||||||||| Sbjct 445 GTTAATGCCGTGATCGTCAAAGACGCAGCGGGCAACAGAAAGCTGGACAAATCCAAAGCA 386 Query 1940 ACGGGCCGTATTGATGGCATGGTCGCAATGACAATGTCCGTTGGTGCTGCTAATGGGGAA 1999 || ||||| ||||| || |||||||||||||| ||||| |||| || ||||| ||||| Sbjct 385 ACAGGCCGCATTGACGGTATGGTCGCAATGACCATGTCTATTGGCGCGGCTAACGGGGAG 326 Query 2000 GTTACCGAACAGGGTGGTGACTTCGACGACTTCATTTTCCGACCGCTGAGCATGTGATGG 2059 || || |||||||||||||| || |||||||||||| |||||||||||||||||||| Sbjct 325 GTCACTTTGCAGGGTGGTGACTTTGAAGACTTCATTTTCAGACCGCTGAGCATGTGATGG 266 Query 2060 AAGAACCTAAATACACGATTGACCTGCGAACCAATAACGGCTGGTGGGCAAGGCTGCAGT 2119 ||||||| |||| || ||||| || || ||||||||||| |||||||| ||| |||| Sbjct 265 AAGAACC-GAATATACAATTGATCTACGGACCAATAACGGTCTGTGGGCAAAGCTTCAGT 207 Query 2120 CCTGGTTTGTCGGCGGGCGTTTAGTCACCCCAAATCAGGGCTCACAGACGGGGCCTGTTT 2179 | ||||| ||||||||||| ||||| || || ||||||||||| ||| | || || || | Sbjct 206 CATGGTTCGTCGGCGGGCGCTTAGTTACGCCTAATCAGGGCTCGCAGTCCGGTCCGGTGT 147 Query 2180 CGGCCCACGGACACCTGGGCGATTCATCCATTAACGATGAACGGATACTGCAAATTTCGA 2239 | || ||| ||||| ||||| || | | ||||| ||||| || | || || |||| Sbjct 146 CTGCATCCGGGCACCTTGGCGACTCCGCAGTCAACGACGAACGAATTTTACAGATATCGA 87 Query 2240 CTGTGTGGCGCTGCGTGAGCCTGATTTCAACGCTCACGGCATGCTTACCGCTTGATGTCT 2299 | || ||||| || ||||| |||||||||||||| || |||| | || |||||||| | Sbjct 86 CGGTCTGGCGTTGTGTGAGTCTGATTTCAACGCTGACATCATGTCTGCCACTTGATGTGT 27 Query 2300 TCGAAACAGA 2309 |||| || || Sbjct 26 TCGAGACGGA 17 >seq57448 Length=845 Score = 132 bits (146), Expect = 1e-26 Identities = 310/461 (67%), Gaps = 15/461 (3%) Strand=Plus/Plus Query 15130 CTGAGGTTATTGACGCCAAGTTACGATATCCAAACACAGCGTTACTCTACATCGAATTCG 15189 ||||||| || ||| |||| | || ||||| || || ||| | ||||| || || | | Sbjct 241 CTGAGGTGATAGACAGCAAGCTGCGCTATCCGAATACCGCGCTGCTCTATATTGAGGTAG 300 Query 15190 ATTCAAGCCAGTTTAACGGCTCTATC-CCGCAGATCTCCTGCGAGCCCCGCGGCCGTGTT 15248 | | || |||||||| || || | || | || ||||| | || || | Sbjct 301 ACGCCAGTCAGTTTAATGG-TCAGGCACCTAAAATTACCTGCAAACCAAAAGGTAAGCTG 359 Query 15249 ATCCGCGTTCCTGATACCTACGACCCTGAAACCCGCACTTATAGCGGTACATGGACCGGT 15308 | ||||| ||| ||||| ||||| | || |||| |||| |||| ||||| ||| Sbjct 360 GTGCGCGTGCCTACGACCTATGACCCGGTAAGTCGCAGCTATAACGGTTCATGGCAGGGT 419 Query 15309 GCGTTTAAGTGGGCATGGACGGATAACCCTGCGTGGATTTTTTACGATCTGGTTGTTTCT 15368 | || || | || | || | ||||| || ||||||||||||||||||||| | Sbjct 420 GATTTCAAATACGCCTATACCAACAACCC-GCATGGATTTTTTACGATCTGGTTCTG--- 475 Query 15369 GACCGG--TTCGGCCTTGGGCACC-GTTTGACCGCTGCGAATATTGATAAATGGACGCTT 15425 ||| | || | |||| ||| || | || | | |||||||| ||| || Sbjct 476 GACAAGATTTATGGTATGGGAACCCGTGTCGATGCATCCATGATTGATAAGTGGGAACTA 535 Query 15426 TATCAGGTTGCTCAGTATTGTGATCAGATGGTACCAGACGGCAAAGGGGGCAACGGTACA 15485 || |||| ||||||||||||||| || || | ||| ||| |||||| Sbjct 536 TACGCCATTGCCCAGTATTGTGATCAGCCCGTGCCGAATGGCGCAGG------CGGTACC 589 Query 15486 GAACCACGCTATACCTGCAACGTGTACATTCAGGACCGGAACGACGCCTACACAGTCCTA 15545 || ||||| | |||||||||||| | ||||||| ||| | | ||||||||||| || || Sbjct 590 GAGCCACGATTTACCTGCAACGTTTTCATTCAGAACCAGCAGGACGCCTACACCGTTCTC 649 Query 15546 CGTGATTTTGCCGCTATCTTCCGTGGCATGACCTACTGGGG 15586 || ||||||| ||||||||||| || || | |||||| Sbjct 650 AAGGACATTGCCGCCATCTTCCGTGGAATTACTTTCTGGGG 690 >seq56734 Length=385 Score = 127 bits (140), Expect = 5e-25 Identities = 207/297 (70%), Gaps = 1/297 (0%) Strand=Plus/Minus Query 21108 TCCTC-TTGTGCCGTATTTGTGCCATTGCGACTTATAATCGCATCGATTTTGCTCGCGTG 21166 ||||| ||||| |||||||||| | ||| || | || | || || |||| ||| || Sbjct 320 TCCTCCTTGTGTCGTATTTGTGTCGTTGTCACCCAAAAGAGAGTCAATCTTGCGCGCATG 261 Query 21167 CTCGGTGAGATGCCCGGCTGAAAGGTGGGCGTATCTTTGAACCATTTCGAGAGTTTCCCA 21226 ||||| || || | || ||||| || || || | |||||||||| ||||||| Sbjct 260 TTCGGTCAGGTGGTTAGGTGCCAGGTGTGCATACCTGCGTACCATTTCGATGCTTTCCCA 201 Query 21227 TCCTCCCATCTCTTTAAGTGCAAGAAGAGAGACACCGGACTGAACCAGCCAGCTTGCCCA 21286 ||||||||| || | | ||| ||| | || || | ||||| ||||||||||||||| Sbjct 200 TCCTCCCATTTCCTGCAATGCCGAAAGTGGAACGCCTGCCTGAATCAGCCAGCTTGCCCA 141 Query 21287 AGTATGCCTCAGGTCATGGAAGCGGAAGTTGCTAATGCCTGCCCGCTTTAACGCTCCCTT 21346 ||||| | | |||||| || ||||| | ||||||||||||||| | || | Sbjct 140 GGTATGACGTAAGTCATGAAAACGGAAATCCTCAATGCCTGCCCGCTTGAGTCCTATCCG 81 Query 21347 CCATGCCTTGTTGCTGTCGGTTCTCATCTTCCTTACCGATGCTGTTTTTGTTCCGTC 21403 ||| ||| |||| || | ||| ||||| || |||| || || || ||||| Sbjct 80 CCACGCCGTGTTATCATCACAGCGCATTTTCCTGACAGATGGCGTCTTGGTGCCGTC 24 >seq39396 Length=387 Score = 104 bits (114), Expect = 5e-18 Identities = 163/228 (71%), Gaps = 4/228 (2%) Strand=Plus/Plus Query 21108 TCCTC-TTGTGCCGTATTTGTGCCATTGCGACTTATAATCGCATCGATTTTGCTCGCGTG 21166 ||||| ||||| |||||||||| | || | || || || || ||||||| | | Sbjct 121 TCCTCCTTGTGTCGTATTTGTGTCGTTATCGCCTAAAAGTGCGTCAATTTTGCGTACAAG 180 Query 21167 CTCGGTGAGATGCCCGGCTGAAAGGTGGGCGTATCTTTGAACCATTTCGAGAGTTTCCCA 21226 ||| || || || | || ||||| || || || | |||||| | | | |||||| Sbjct 181 CTCAGTCAGGTGGTTAGGTGCCAGGTGTGCATACCTGCGTACCATT-CTAT-GCTTCCCA 238 Query 21227 TCCTCCCATCTCTTTAAGTGCAAGAAGAGAGACACCGGACTGAACCAGCCAGCTTGCCCA 21286 ||| ||||| || ||| |||| ||| | ||||| | ||||| |||||||||||||| Sbjct 239 TCCGCCCATTCCTGTAA-TGCAGAAAGTGGAACACCTGCCTGAATAAGCCAGCTTGCCCA 297 Query 21287 AGTATGCCTCAGGTCATGGAAGCGGAAGTTGCTAATGCCTGCCCGCTT 21334 ||||||| | |||||| || ||||| | ||||||||||||||| Sbjct 298 GGTATGCCGTAAGTCATGAAAACGGAAATCCTCAATGCCTGCCCGCTT 345 >seq83242 Length=311 Score = 98.7 bits (108), Expect = 2e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 3762 CTGCGCGAAATCAGCGTCTGCACTTTCCCCGCCAACGAACAGGCTGGCATCGCAGCCATG 3821 ||| ||||||||||| ||||||| | || |||||||| || || | | || | | Sbjct 222 CTGAGCGAAATCAGCATCTGCACCATGCCGGCCAACGAGCACGCCACCGTGGCCTCGCTC 163 Query 3822 AAAAGTGTCGATGGTATTGAAACGATTCGTGATGTGGAGAACTGGCTGAGGGATTCAGTC 3881 || || | || || || |||| ||||| |||| |||| |||||||| | ||| ||| Sbjct 162 AAGAGCATGGACGGCATCGAAAGCATTCGCGATGCGGAGCACTGGCTGCGAGATGCAGCT 103 Query 3882 GGCCTCACCAAATCACAGGCAGTTGGGCTAATTGCCCGGTTTAAGTCAGCGATTCGGAGC 3941 |||||| |||| || |||| | | | || ||||| | ||||| || ||||||| Sbjct 102 GGCCTCTCCAAGTCCGAGGCGCAGGCGTTCATCGCCCGCATCAAGTCCGCAGTTCGGAGT 43 Query 3942 GAGTCCGAGGGC 3953 |||||||| ||| Sbjct 42 GAGTCCGAAGGC 31 >seq93648 Length=577 Score = 84.2 bits (92), Expect = 5e-12 Identities = 163/238 (68%), Gaps = 2/238 (1%) Strand=Plus/Minus Query 15126 TTCACTGAGGTTATTGACGCCAAGTTACGATATCCAAACACAGCGTTACTCTACATCGAA 15185 ||| | ||||| || ||| ||| | || ||||| ||||| || |||||||| |||||| Sbjct 257 TTCGCAGAGGTCATCGACAGCAAACTTCGCTATCCCAACACCGCCTTACTCTATATCGAA 198 Query 15186 TTCGATTCAAGCCAGTTTAACGGCTCTATC-CCGCAGATCTCCTGCGAGCCCCGCGGCCG 15244 | | | ||||| ||||| || | ||| | ||| |||| |||| ||| Sbjct 197 GCCAACGCGCAGCAGTTCAACGG-TCAGGCTCCGAAAATCACCTGTAAGCCTAAAGGCAA 139 Query 15245 TGTTATCCGCGTTCCTGATACCTACGACCCTGAAACCCGCACTTATAGCGGTACATGGAC 15304 | | ||||||||| || || ||||| | || ||||||||| ||||||| ||| | Sbjct 138 GCTGGTGCGCGTTCCTACCACGTATGACCCGGTAAGCCGCACTTACAGCGGTAGCTGGTC 79 Query 15305 CGGTGCGTTTAAGTGGGCATGGACGGATAACCCTGCGTGGATTTTTTACGATCTGGTT 15362 ||| | || || | || | || | || || || ||| | ||||||||||||||| Sbjct 78 CGGCGATTTCAAATACGCCTACACCAACAATCCGGCATGGGTCTTTTACGATCTGGTT 21 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 117012264877800