Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_016163.1 Length=262391 Score E Sequences producing significant alignments: (Bits) Value seq66202 163 5e-35 >seq66202 Length=972 Score = 163 bits (180), Expect = 5e-35 Identities = 228/318 (72%), Gaps = 4/318 (1%) Strand=Plus/Plus Query 29520 CATGAAGTAAAAGGTTCTATTCAGGTATTATGGGATATCTTTGGTGGTTCAATCAACACT 29579 ||||||| ||| || ||| ||||||| | ||||| |||||||||||| | | ||| || Sbjct 620 CATGAAGCAAAGGGATCTGTTCAGGTTCTGTGGGAAATCTTTGGTGGTGAAGTTAACTCT 679 Query 29580 AAAGGTTTCAAAGTACTGAATGACCATATTGGTCTGATTTATGGTGATTCAATCACTATT 29639 ||||||| ||| || || || || ||||| | || |||||||||||||||||| | Sbjct 680 AAAGGTTACAAGGTTCTTGATACACACGTTGGTGTAATCTATGGTGATTCAATCACTCTG 739 Query 29640 CCTCGTGCTGTACAAATCTTTACTCGTCTTAAAGAGAAAGGTTTTGCATCTTCTAACGTA 29699 || || |||||||| || | ||| |||||||||||||| ||| | Sbjct 740 AAACGCGCCACTGAAATCTTTGAACGCTTGGAAGCTAAAGGTTTTGCATCAAGTAATATT 799 Query 29700 GTATTGGGTATTGGTTCCTTTACCTATCAGATGAATACCCGTGATACCTTCGGATTTGCT 29759 ||||| ||||||||| || ||| || | ||||| ||||| ||||| || ||||| Sbjct 800 GTATTCGGTATTGGTAGCTATACTTACAACTACAATACACGTGACACCTTTGGTTTTGCA 859 Query 29760 TGTAAGGCTACAGGTTCAATTATCGGTGATCGTACTATTCTCGTTAGTAAAGAACCTAAA 29819 ||||| || || |||||||| || | || | || || || |||||||| || ||| Sbjct 860 TGTAAAGCAACTGGTTCAATCATTGATGGTGAAGAGATCCTGGTGAGTAAAGAGCC-AAA 918 Query 29820 ACTGATCCAGGTAAGAAA 29837 |||||| | ||||||| Sbjct 919 ACTGAT---GTTAAGAAA 933 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 838155826588000