Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_016571.1 Length=284757 Score E Sequences producing significant alignments: (Bits) Value seq36028 502 5e-137 seq34483 100 5e-16 seq34332 100 5e-16 seq31229 100 5e-16 >seq36028 Length=2231 Score = 502 bits (556), Expect = 5e-137 Identities = 700/972 (72%), Gaps = 8/972 (1%) Strand=Plus/Minus Query 207855 ACTTCTGAGTCGATCTGACCTACCAGGTAAGAAGAAACTTCTACTTCCTGAGGAGCAACC 207914 |||||||| || |||||||| |||||||||||| ||||| |||||||| || |||||| Sbjct 970 ACTTCTGAATCAATCTGACCCACCAGGTAAGAACTGACTTCCACTTCCTGCGGGGCAACC 911 Query 207915 TGAACGTTGTCAGTTACCAGCCATGAGTTAATCCATGGAATTGGGTTAGAGTTGGTTTTG 207974 |||||||| || | |||||||| | ||| ||||| ||||| ||||| ||| |||| | Sbjct 910 TGAACGTTATCGGACACCAGCCAGGCGTTGATCCAGGGAATCGGGTTCGAGCGCGTTTCG 851 Query 207975 AATGGAAGATCCAAACCGATCGCCTGCATACGGATGTTGGTAATGTACTCAACATACTGG 208034 || || ||||| | || | |||||||||||| |||||||| ||||| || | ||||||| Sbjct 850 AACGGCAGATCGAGGCCAACCGCCTGCATACGAATGTTGGTGATGTATTCGATATACTGG 791 Query 208035 CAGAGGATCTCTTTGTTCAGACCGATCATTGAACCATCTTTGAACAGATAGTCAGCCCAC 208094 || ||||| |||||||||||||||||||| || || | ||||||| || || |||||| Sbjct 790 CACAGGATATCTTTGTTCAGACCGATCATGGAGCCGCCGCTGAACAGGTAATCTGCCCAC 731 Query 208095 TCTTTTTCTTGCTGAG--CGGTAGCAACGAACATGTCGTATGACTCTTGACGACACTCTG 208152 ||||| || || | || || | | |||| ||| | |||||| ||| || || | Sbjct 730 TCTTTCTCCTG-TAAGGCCGCTTTC-TTAAACAGCTCGAAGCACTCTTCACGGCATTCGG 673 Query 208153 CTGCAATCTCAGCCATCTCTGGATCATCTTTACCAGAGTTCATCAGGTTGATGATGTGCT 208212 | ||||| || ||| || ||||| |||| ||| | | || ||| || | ||||||| Sbjct 672 CGGCAATTTCTTTCATTTCAGGATCGTCTTCACCGGTGCGCAGCAGATTCAGCATGTGCT 613 Query 208213 GAGTACCAACCATGTGAAGTGCTTCGTCACGTGCGATCATTTTGATGATCTTAGCGTTAC 208272 | || || || ||| || |||||||| ||||| |||| |||||||| || ||||| | Sbjct 612 GGGTGCCGGTCAGGTGCAGAGCTTCGTCGCGTGCAATCAGCTTGATGATTTTGGCGTTGC 553 Query 208273 CTTCCATCAGCTTACGTTCGGCAAATGCGAATGAGCAAGCGAAGGATACGTAGAAACGAA 208332 |||||||||| | || || ||||| || || ||||| || ||| |||||||| || | Sbjct 552 CTTCCATCAGTTCTCGCTCAGCAAACGCAAAAGAGCAGGCAAAGCTGACGTAGAAGCGGA 493 Query 208333 TAGCTTCAAGTGAGTTGATAGATTGCAGAGCCAGGTAC-AGTGCTTTCTTAATAGCACGA 208391 | ||||| || | |||| ||| | ||| | |||||| || | || || Sbjct 492 TCGCTTCCAGCGCATTGACGCTCATCAGGCAAATATACAACTGCTTT-TTCAGCGCGCGC 434 Query 208392 AGATTAACATTAACCTTCTCGCCATTGACTACGTGGTCACCCAGACCCAGGTAATAGTAC 208451 | |||||| ||| || |||||||| || ||| |||||| ||| | Sbjct 433 ACATTAACCGTAATGGACTTACCATTGACCTGATGCGTACCTTCACCCAGCAAATGCCAG 374 Query 208452 TGGTTGATCAAGGCAATCAGTTTGTCGTAGTAATGGGA-AACAGATGCAGCACGTTTCTT 208510 | ||| ||| ||||||| | |||||||| | || | ||| ||||| | Sbjct 373 TAGTTAGTCATCTCAATCAGGTCATCGTAGTACTTAGAGATGTCCTGC-GCACGCGCCAG 315 Query 208511 GATATGTTCGTTATCTACAACGTCATCAAAGACAATGGAAGGATCGTTAACGATGTTCCT 208570 || || | ||| || | || ||||| || | || |||||||| |||||||| | Sbjct 314 AATCTGCTGGTTGGTGACGATATCGTCAAACACCACAGACGGATCGTTCACGATGTTGCG 255 Query 208571 GATGATGTGAGTATAGCTACGACTGTGGATGGTTTCAGAGAAGCCCCAGGTCTCAGCCCA 208630 |||||||| || || ||| |||||| ||||| ||||| ||||||| || ||| Sbjct 254 AATGATGTGGGTGTACGAGCGAGAGTGGATCGTTTCGGAGAACGCCCAGGTTTCTATCCA 195 Query 208631 TGTTTCCAGCTCTGGGATAGAGCAGATCGGGAGTAATGCAACGTTTGGACCACGGCCCTG 208690 |||||||| || || || ||| | ||| || | ||| ||||| || | || ||||| Sbjct 194 GGTTTCCAGTTCCGGAATCGAGATCAGCGGCAGCAGTGCCACGTTCGGGCTGCGTCCCTG 135 Query 208691 GATAGAGTCCAGTAGTGTCTGATATTTCAGGTTACTGATGAACAGGTGTTTCTCGTGATC 208750 || |||||||||| ||||| ||||||||||| |||||||| | || || || ||||| Sbjct 134 AATCGAGTCCAGTAACGTCTGGTATTTCAGGTTGCTGATGAAGATATGCTTTTCATGATC 75 Query 208751 TGGTAAAGCCATGTAGTCAATACGGTCACGGGAGACATCTACTTCTTCAGGACGCCAGAA 208810 || | ||| |||||| || || || || |||||||| |||||||||||||||||||| Sbjct 74 GGGCAGGGCCTGGTAGTCGATGCGATCGCGTGAGACATCGACTTCTTCAGGACGCCAGAA 15 Query 208811 GAAAGAAAGTTG 208822 ||| ||||| || Sbjct 14 GAACGAAAGCTG 3 >seq34483 Length=1392 Score = 100 bits (110), Expect = 5e-16 Identities = 71/80 (89%), Gaps = 1/80 (1%) Strand=Plus/Minus Query 16121 TGGCGCGCCCTACAGGATTCGAACCTGTGACCAATAGCTTAGAAGGCTACTGCTCTATCC 16180 |||||||||||||||||||||||||||||||| | ||||||||||| |||||||||| Sbjct 1311 TGGCGCGCCCTACAGGATTCGAACCTGTGACCTACGGCTTAGAAGGCCGGTGCTCTATCC 1252 Query 16181 A-CTGAGCTAAGAGCGCCGA 16199 | |||||||||| |||| || Sbjct 1251 AGCTGAGCTAAGGGCGCGGA 1232 >seq34332 Length=487 Score = 100 bits (110), Expect = 5e-16 Identities = 71/80 (89%), Gaps = 1/80 (1%) Strand=Plus/Plus Query 16817 TCTCTAATGTGGCGCTCGTGACAGGGCTCGAACCTGTGACATACGGATTAACAGTCCGCC 16876 |||| ||| |||| | |||| || |||||||| ||||||||||||||||||||||||| Sbjct 276 TCTC-AATCTGGCTCCTCTGACTGGACTCGAACCAGTGACATACGGATTAACAGTCCGCC 334 Query 16877 GTTCTACCGACTGAACTACA 16896 |||||||||||||||||||| Sbjct 335 GTTCTACCGACTGAACTACA 354 >seq31229 Length=3871 Score = 100 bits (110), Expect = 5e-16 Identities = 71/80 (89%), Gaps = 1/80 (1%) Strand=Plus/Plus Query 16121 TGGCGCGCCCTACAGGATTCGAACCTGTGACCAATAGCTTAGAAGGCTACTGCTCTATCC 16180 |||||||||||||||||||||||||||||||| | ||||||||||| |||||||||| Sbjct 52 TGGCGCGCCCTACAGGATTCGAACCTGTGACCTACGGCTTAGAAGGCCGGTGCTCTATCC 111 Query 16181 A-CTGAGCTAAGAGCGCCGA 16199 | |||||||||| |||| || Sbjct 112 AGCTGAGCTAAGGGCGCGGA 131 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 909610454996000